Rroxscaffold_3G00240160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0020701
Physical Location & Seq
Reverse (-)
31827252 .. 31838165
10914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240160.1

Sequence Viewer

Length: 363 bp
ATGCTTCCTCACTATTCCAAGAAAAAAAAATTATATATATGCGTGCACTATGTTAAACAAAAAGCACATTATGTGCCTTCGTCAAAAGAAACGACGAAGAGGGAATCAAGCAATTACAAATCACAAATCAATCGGCATTTACTACGAGAGAAAGGCGTCGACCAAAGCTTCACTCTCGGAGGCCAGAGGTATGTCAACCATCATTCTCCATCCCGAACAGTCTGCATAAGAAGGAAAGAGGTACCAAAGGACATAGAAATGGCAGTCGTGGTGATGGACTCCATTGACCAACACAACGCCACCGGTCCGGTGACGTCCACACACATCGGTGGAGTACGGTTCAGCAGCTATTCCCAGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.77

Weight (kDa)

9.88

Isoelectric Point (pI)

68.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020701)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027656
rosa_multiflora Rmu_sc0007125.1_g000011 Rmu_ssc0000009.1_g000026
rosa_roxburghii Rroxscaffold_1G00039810 Rroxscaffold_3G00240160 Rroxscaffold_4G00331750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 317
Acc65I GGTACC 1 cut(s) 241
AccB1I GGYRCC 1 cut(s) 241
AccI GTMKAC 1 cut(s) 159
AcyI GRCGYC 2 cut(s) 156, 314
AfaI GTAC 2 cut(s) 243, 336
AgeI ACCGGT 1 cut(s) 302
AjnI CCWGG 1 cut(s) 354
AleI CACNNNNGTG 1 cut(s) 327
AluBI AGCT 2 cut(s) 168, 348
AluI AGCT 2 cut(s) 168, 348
Alw21I GWGCWC 1 cut(s) 48
Alw44I GTGCAC 1 cut(s) 44
AoxI GGCC 1 cut(s) 181
ApaLI GTGCAC 1 cut(s) 44
ApeKI GCWGC 1 cut(s) 345
AsiGI ACCGGT 1 cut(s) 302
Asp718I GGTACC 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 2 cut(s) 283, 322
AvaII GGWCC 1 cut(s) 305
BaeGI GKGCMC 1 cut(s) 48
BanI GGYRCC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 48
BbvI GCAGC 1 cut(s) 357
BccI CCATC 3 cut(s) 207, 217, 268
BcgI CGANNNNNNTGC 2 cut(s) 204, 238
BciT130I CCWGG 1 cut(s) 356
BisI GCNGC 1 cut(s) 346
BlsI GCNGC 1 cut(s) 347
Bme1390I CCNGG 1 cut(s) 356
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 356
BsaHI GRCGYC 2 cut(s) 156, 314
BsaJI CCNNGG 1 cut(s) 354
BsaWI WCCGGW 2 cut(s) 302, 307
Bse118I RCCGGY 1 cut(s) 302
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 209
BseSI GKGCMC 1 cut(s) 48
BseXI GCAGC 1 cut(s) 357
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 241
BshTI ACCGGT 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 48
BsiSI CCGG 2 cut(s) 303, 308
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 1 cut(s) 48
BspANI GGCC 1 cut(s) 183
BspLI GGNNCC 1 cut(s) 243
BspT107I GGYRCC 1 cut(s) 241
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 1 cut(s) 354
BssNI GRCGYC 2 cut(s) 156, 314
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 220, 339
Bst6I CTCTTC 1 cut(s) 92
BstACI GRCGYC 2 cut(s) 156, 314
BstC8I GCNNGC 1 cut(s) 44
BstF5I GGATG 1 cut(s) 209
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 354
BstSLI GKGCMC 1 cut(s) 48
BstV1I GCAGC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 1 cut(s) 209
Cac8I GCNNGC 1 cut(s) 44
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 1 cut(s) 305
CpoI CGGWCCG 1 cut(s) 305
CseI GACGC 1 cut(s) 145
Csp6I GTAC 2 cut(s) 242, 335
CspAI ACCGGT 1 cut(s) 302
CspI CGGWCCG 1 cut(s) 305
CviJI RGCY 3 cut(s) 168, 183, 348
CviKI_1 RGCY 3 cut(s) 168, 183, 348
CviQI GTAC 2 cut(s) 242, 335
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
Eco47I GGWCC 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 354
FaiI YATR 9 cut(s) 34, 36, 38, 40, 51, 72, 192, 227, 254
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 346
FokI GGATG 1 cut(s) 196
Fsp4HI GCNGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 346
HaeIII GGCC 1 cut(s) 183
HapII CCGG 2 cut(s) 303, 308
HgaI GACGC 1 cut(s) 145
Hin1I GRCGYC 2 cut(s) 156, 314
HincII GTYRAC 2 cut(s) 160, 196
HindII GTYRAC 2 cut(s) 160, 196
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 2 cut(s) 104, 278
HpaII CCGG 2 cut(s) 303, 308
HphI GGTGA 2 cut(s) 283, 322
Hpy166II GTNNAC 4 cut(s) 46, 160, 196, 318
Hpy188I TCNGA 1 cut(s) 179
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 4 cut(s) 46, 160, 196, 318
Hpy99I CGWCG 2 cut(s) 97, 161
HpyAV CCTTC 2 cut(s) 87, 225
HpyCH4III ACNGT 2 cut(s) 220, 339
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 2 cut(s) 46, 225
HpySE526I ACGT 1 cut(s) 314
Hsp92I GRCGYC 2 cut(s) 156, 314
KpnI GGTACC 1 cut(s) 245
LpnPI CCDG 4 cut(s) 197, 316, 321, 341
Lsp1109I GCAGC 1 cut(s) 357
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 310
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 48
MluCI AATT 2 cut(s) 29, 112
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 5 cut(s) 18, 93, 173, 180, 232
MseI TTAA 1 cut(s) 54
MslI CAYNNNNRTG 2 cut(s) 257, 327
MspI CCGG 2 cut(s) 303, 308
MspR9I CCNGG 1 cut(s) 356
MvaI CCWGG 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 310
OliI CACNNNNGTG 1 cut(s) 327
PfeI GAWTC 1 cut(s) 104
PinAI ACCGGT 1 cut(s) 302
PkrI GCNGC 1 cut(s) 347
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 305
RsaI GTAC 2 cut(s) 243, 336
RsaNI GTAC 2 cut(s) 242, 335
RseI CAYNNNNRTG 2 cut(s) 257, 327
Rsr2I CGGWCCG 1 cut(s) 305
RsrII CGGWCCG 1 cut(s) 305
SalI GTCGAC 1 cut(s) 158
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 1 cut(s) 346
Sau96I GGNCC 1 cut(s) 305
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 356
SduI GDGCHC 1 cut(s) 48
SetI ASST 6 cut(s) 170, 191, 243, 317, 350, 360
SinI GGWCC 1 cut(s) 305
SmiMI CAYNNNNRTG 2 cut(s) 257, 327
Sse9I AATT 2 cut(s) 29, 112
StyD4I CCNGG 1 cut(s) 354
TaaI ACNGT 2 cut(s) 220, 339
TaiI ACGT 1 cut(s) 317
TaqI TCGA 1 cut(s) 159
TasI AATT 2 cut(s) 29, 112
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 1 cut(s) 345
Tsp45I GTSAC 1 cut(s) 310
VneI GTGCAC 1 cut(s) 44
VpaK11BI GGWCC 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 159
ZraI GACGTC 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.