Rroxscaffold_4G00331750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0020701
Physical Location & Seq
Reverse (-)
65776932 .. 65782739
5808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331750.1

Sequence Viewer

Length: 705 bp
ATGGCCGACCACCAAGCTGCAGAGAGAGGCATTGACCAAAGCTTCACTTCCGGAGGCCGAGGTATGTTCACCATCATTCTCCATACCCGAGTAGTCCGCATAAGAAGGACAGAGGTACCAAAGGACATGGAAACGACAGTCGTGGTGGTGGAGACCACCGAGCAACACAACCCCACCGGTCCGGTGACGTCCACACACATTGGTGGAGTACGGTTCGGCAGCCTTTTCCCAAGTGTAGAGTTAGGTGTATATACCTTGGTGGAGAAAGAGTGTGAGGGGACTGTGGAAAAAAGAGAAAAAGATGGGATAGAACATGAAAGATGGAGTTGTATGAGGAGAGACTCGATCTCTCTCAAACCGGGGAGGAACACTCTTGACAGAGAGACTCGATCTCTCTCTCGAACGTCCTTTGCTTCTCTCTCTTTACTTTCCTTCCTCCGAAGCCGCCATCGGCGGCCACGGTCTGGCCACCAGAAAAGAGACATGACCGTTGTTGATCGTTTCTTCAGGGGTGGTGAAGCAATCGTTGGTCATGTTGCGACCATGACCGGTGAATCAAAGTACGCGGAACTGGAAGCCTCAAAAGGATGCAGTAATCTCTGGGAAACAGATATATTCAGAGGAAATAGAGACAATCCAGATTTCTGTAGACTAAAAACAAACTATGTAAGACGTATAGGTGATGCAATATACATGGCATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.51

Weight (kDa)

9.32

Isoelectric Point (pI)

48.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020701)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027656
rosa_multiflora Rmu_sc0007125.1_g000011 Rmu_ssc0000009.1_g000026
rosa_roxburghii Rroxscaffold_1G00039810 Rroxscaffold_3G00240160 Rroxscaffold_4G00331750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 191
Acc65I GGTACC 1 cut(s) 115
AccB1I GGYRCC 1 cut(s) 115
AccB7I CCANNNNNTGG 1 cut(s) 464
AccI GTMKAC 1 cut(s) 649
AccII CGCG 1 cut(s) 566
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 4 cut(s) 97, 445, 454, 566
AcoI YGGCCR 3 cut(s) 3, 455, 466
AcuI CTGAAG 1 cut(s) 490
AcyI GRCGYC 1 cut(s) 188
AfaI GTAC 3 cut(s) 117, 210, 563
AfiI CCNNNNNNNGG 1 cut(s) 464
AgeI ACCGGT 2 cut(s) 176, 548
AjuI GAANNNNNNNTTGG 2 cut(s) 510, 542
AleI CACNNNNGTG 1 cut(s) 201
AluBI AGCT 2 cut(s) 17, 42
AluI AGCT 2 cut(s) 17, 42
Alw26I GTCTC 5 cut(s) 146, 333, 377, 474, 624
Ama87I CYCGRG 1 cut(s) 87
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 4 cut(s) 3, 55, 455, 466
ApeKI GCWGC 2 cut(s) 17, 219
AsiGI ACCGGT 2 cut(s) 176, 548
Asp718I GGTACC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 360
AsuHPI GGTGA 5 cut(s) 61, 196, 527, 563, 692
AvaI CYCGRG 1 cut(s) 87
AvaII GGWCC 1 cut(s) 179
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BalI TGGCCA 1 cut(s) 468
BanI GGYRCC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 4, 231
BccI CCATC 4 cut(s) 80, 296, 315, 456
BcnI CCSGG 1 cut(s) 360
BcoDI GTCTC 5 cut(s) 146, 333, 377, 474, 624
BfmI CTRYAG 2 cut(s) 18, 646
BisI GCNGC 4 cut(s) 18, 220, 445, 455
BlsI GCNGC 4 cut(s) 19, 221, 446, 456
Bme1390I CCNGG 1 cut(s) 360
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 578, 673
BplI GAGNNNNNCTC 2 cut(s) 355, 387
BpuMI CCSGG 1 cut(s) 360
BsaHI GRCGYC 1 cut(s) 188
BsaI GGTCTC 1 cut(s) 146
BsaJI CCNNGG 4 cut(s) 58, 255, 359, 458
BsaWI WCCGGW 4 cut(s) 50, 176, 181, 548
BsaXI ACNNNNNCTCC 2 cut(s) 254, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 464
Bse118I RCCGGY 2 cut(s) 176, 548
Bse1I ACTGG 1 cut(s) 576
BseAI TCCGGA 1 cut(s) 50
BseDI CCNNGG 4 cut(s) 58, 255, 359, 458
BseGI GGATG 1 cut(s) 593
BseLI CCNNNNNNNGG 1 cut(s) 464
BseNI ACTGG 1 cut(s) 576
BseRI GAGGAG 1 cut(s) 349
BseXI GCAGC 2 cut(s) 4, 231
Bsh1236I CGCG 1 cut(s) 566
BshFI GGCC 4 cut(s) 5, 57, 457, 468
BshNI GGYRCC 1 cut(s) 115
BshTI ACCGGT 2 cut(s) 176, 548
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 5 cut(s) 51, 177, 182, 359, 549
BslFI GGGAC 1 cut(s) 292
BslI CCNNNNNNNGG 1 cut(s) 464
BsmAI GTCTC 5 cut(s) 146, 333, 377, 474, 624
BsmFI GGGAC 1 cut(s) 292
BsnI GGCC 4 cut(s) 5, 57, 457, 468
Bso31I GGTCTC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 87
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 3 cut(s) 345, 389, 496
BspACI CCGC 4 cut(s) 97, 445, 454, 566
BspANI GGCC 4 cut(s) 5, 57, 457, 468
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 1 cut(s) 566
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 115
BspTNI GGTCTC 1 cut(s) 146
BsrFI RCCGGY 2 cut(s) 176, 548
BsrI ACTGG 1 cut(s) 576
BssAI RCCGGY 2 cut(s) 176, 548
BssECI CCNNGG 4 cut(s) 58, 255, 359, 458
BssMI GATC 3 cut(s) 345, 389, 496
BssNI GRCGYC 1 cut(s) 188
BssT1I CCWWGG 1 cut(s) 255
Bst4CI ACNGT 5 cut(s) 139, 213, 283, 462, 490
BstACI GRCGYC 1 cut(s) 188
BstDSI CCRYGG 1 cut(s) 458
BstF5I GGATG 1 cut(s) 593
BstFNI CGCG 1 cut(s) 566
BstKTI GATC 3 cut(s) 348, 392, 499
BstMAI GTCTC 5 cut(s) 146, 333, 377, 474, 624
BstMBI GATC 3 cut(s) 345, 389, 496
BstSCI CCNGG 1 cut(s) 358
BstSFI CTRYAG 2 cut(s) 18, 646
BstUI CGCG 1 cut(s) 566
BstV1I GCAGC 2 cut(s) 4, 231
BsuRI GGCC 4 cut(s) 5, 57, 457, 468
BtgI CCRYGG 1 cut(s) 458
BtsCI GGATG 1 cut(s) 593
Cfr10I RCCGGY 2 cut(s) 176, 548
Cfr13I GGNCC 1 cut(s) 179
CpoI CGGWCCG 1 cut(s) 179
Csp6I GTAC 3 cut(s) 116, 209, 562
CspAI ACCGGT 2 cut(s) 176, 548
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CspI CGGWCCG 1 cut(s) 179
CviAII CATG 6 cut(s) 127, 314, 484, 533, 544, 694
CviJI RGCY 9 cut(s) 5, 17, 42, 57, 222, 444, 457, 468, 578
CviKI_1 RGCY 9 cut(s) 5, 17, 42, 57, 222, 444, 457, 468, 578
CviQI GTAC 3 cut(s) 116, 209, 562
DpnI GATC 3 cut(s) 347, 391, 498
DpnII GATC 3 cut(s) 345, 389, 496
EaeI YGGCCR 3 cut(s) 3, 455, 466
Eco130I CCWWGG 1 cut(s) 255
Eco31I GGTCTC 1 cut(s) 146
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 490
Eco88I CYCGRG 1 cut(s) 87
EcoT14I CCWWGG 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 255
FaeI CATG 6 cut(s) 130, 317, 487, 536, 547, 697
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FaqI GGGAC 1 cut(s) 292
FatI CATG 6 cut(s) 126, 313, 483, 532, 543, 693
FblI GTMKAC 1 cut(s) 649
Fnu4HI GCNGC 4 cut(s) 18, 220, 445, 455
FokI GGATG 1 cut(s) 600
Fsp4HI GCNGC 4 cut(s) 18, 220, 445, 455
GluI GCNGC 4 cut(s) 18, 220, 445, 455
HaeIII GGCC 4 cut(s) 5, 57, 457, 468
HapII CCGG 5 cut(s) 51, 177, 182, 359, 549
Hin1I GRCGYC 1 cut(s) 188
Hin1II CATG 6 cut(s) 130, 317, 487, 536, 547, 697
HindIII AAGCTT 1 cut(s) 40
HinfI GANTC 3 cut(s) 341, 385, 554
HpaII CCGG 5 cut(s) 51, 177, 182, 359, 549
HphI GGTGA 5 cut(s) 61, 196, 527, 563, 692
Hpy166II GTNNAC 3 cut(s) 69, 192, 650
Hpy188I TCNGA 2 cut(s) 440, 620
Hpy188III TCNNGA 4 cut(s) 51, 374, 399, 638
Hpy8I GTNNAC 3 cut(s) 69, 192, 650
HpyAV CCTTC 2 cut(s) 99, 442
HpyCH4III ACNGT 5 cut(s) 139, 213, 283, 462, 490
HpyCH4IV ACGT 3 cut(s) 188, 404, 673
HpyCH4V TGCA 3 cut(s) 20, 591, 686
HpySE526I ACGT 3 cut(s) 188, 404, 673
Hsp92I GRCGYC 1 cut(s) 188
Hsp92II CATG 6 cut(s) 130, 317, 487, 536, 547, 697
Kpn2I TCCGGA 1 cut(s) 50
KpnI GGTACC 1 cut(s) 119
Kzo9I GATC 3 cut(s) 345, 389, 496
Lsp1109I GCAGC 2 cut(s) 4, 231
LweI GCATC 2 cut(s) 578, 673
MaeII ACGT 3 cut(s) 188, 404, 673
MaeIII GTNAC 1 cut(s) 184
MalI GATC 3 cut(s) 347, 391, 498
MboI GATC 3 cut(s) 345, 389, 496
MboII GAAGA 1 cut(s) 496
MlsI TGGCCA 1 cut(s) 468
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 2 cut(s) 335, 379
Mox20I TGGCCA 1 cut(s) 468
MroI TCCGGA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 468
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 468
MspI CCGG 5 cut(s) 51, 177, 182, 359, 549
MspR9I CCNGG 1 cut(s) 360
MvnI CGCG 1 cut(s) 566
NciI CCSGG 1 cut(s) 360
NdeII GATC 3 cut(s) 345, 389, 496
NlaIII CATG 6 cut(s) 130, 317, 487, 536, 547, 697
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 184
OliI CACNNNNGTG 1 cut(s) 201
PfeI GAWTC 1 cut(s) 554
PflMI CCANNNNNTGG 1 cut(s) 464
PinAI ACCGGT 2 cut(s) 176, 548
PkrI GCNGC 4 cut(s) 19, 221, 446, 456
PleI GAGTC 2 cut(s) 335, 379
PpsI GAGTC 2 cut(s) 335, 379
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 1 cut(s) 179
PstI CTGCAG 1 cut(s) 22
RsaI GTAC 3 cut(s) 117, 210, 563
RsaNI GTAC 3 cut(s) 116, 209, 562
RseI CAYNNNNRTG 1 cut(s) 201
Rsr2I CGGWCCG 1 cut(s) 179
RsrII CGGWCCG 1 cut(s) 179
SatI GCNGC 4 cut(s) 18, 220, 445, 455
Sau3AI GATC 3 cut(s) 345, 389, 496
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 2 cut(s) 335, 379
ScrFI CCNGG 1 cut(s) 360
SfaNI GCATC 2 cut(s) 578, 673
SfcI CTRYAG 2 cut(s) 18, 646
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 201
SsiI CCGC 4 cut(s) 97, 445, 454, 566
StyD4I CCNGG 1 cut(s) 358
StyI CCWWGG 1 cut(s) 255
TaaI ACNGT 5 cut(s) 139, 213, 283, 462, 490
TaiI ACGT 3 cut(s) 191, 407, 676
TaqI TCGA 3 cut(s) 344, 388, 400
TauI GCSGC 2 cut(s) 447, 457
TfiI GAWTC 1 cut(s) 554
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 2 cut(s) 17, 219
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 179
XmiI GTMKAC 1 cut(s) 649
ZraI GACGTC 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.