Rroxscaffold_1G00039810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0020701
Physical Location & Seq
Forward (+)
57502635 .. 57504694
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00039810.1

Sequence Viewer

Length: 318 bp
ATGGCTGCTGCCCACCAAGCTGCAGAGAGAGTAACATCGACCAAAGCTTCGATTCCGGATGCTAAAGATTTGTCCACCATCATTCTCCATACCCAAACAGTCTGCACAAAGAGGTTAAAGGTACCCAAAGACATAAAAACGGCCGTCGTGGTGGTGGAGACCACCAAGCAACACAACGCCATCGGTCCGGCGACGTCCACACACGTCGGTGGAGTGCCGCGTGTGCACAGGAGAATTGTGGCCGACGCCGCCGTCCTTCGCATCGAAAATGAGATTCCGCACTGTCCCCGATTCGATTTCGTTCGCTTCTTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.5

Weight (kDa)

9.91

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020701)

Species Orthologous Gene IDs
rosa_laevigata RLG00000027656
rosa_multiflora Rmu_sc0007125.1_g000011 Rmu_ssc0000009.1_g000026
rosa_roxburghii Rroxscaffold_1G00039810 Rroxscaffold_3G00240160 Rroxscaffold_4G00331750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 251
AatII GACGTC 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 121
AccB1I GGYRCC 1 cut(s) 121
AccII CGCG 1 cut(s) 220
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 3 cut(s) 218, 249, 278
AcoI YGGCCR 2 cut(s) 141, 240
AcyI GRCGYC 2 cut(s) 194, 246
AfaI GTAC 1 cut(s) 123
AflIII ACRYGT 1 cut(s) 202
AjiI CACGTC 1 cut(s) 205
AleI CACNNNNGTG 1 cut(s) 207
AluBI AGCT 2 cut(s) 20, 47
AluI AGCT 2 cut(s) 20, 47
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 224
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 2 cut(s) 141, 240
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 3 cut(s) 5, 8, 20
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
Asp718I GGTACC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 185
AvaII GGWCC 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 228
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 86, 188
BceAI ACGGC 3 cut(s) 128, 156, 236
BcoDI GTCTC 1 cut(s) 152
BfmI CTRYAG 1 cut(s) 21
BisI GCNGC 5 cut(s) 6, 9, 21, 218, 249
BlsI GCNGC 5 cut(s) 7, 10, 22, 219, 250
Bme18I GGWCC 1 cut(s) 185
BmgBI CACGTC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 123
BmsI GCATC 2 cut(s) 49, 270
BsaHI GRCGYC 2 cut(s) 194, 246
BsaI GGTCTC 1 cut(s) 152
BsaWI WCCGGW 1 cut(s) 55
BseAI TCCGGA 1 cut(s) 55
BseGI GGATG 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 228
BseX3I CGGCCG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 7
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 1 cut(s) 220
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 2 cut(s) 143, 242
BshNI GGYRCC 1 cut(s) 121
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 2 cut(s) 56, 188
BslFI GGGAC 1 cut(s) 270
BsmAI GTCTC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 270
BsnI GGCC 2 cut(s) 143, 242
Bso31I GGTCTC 1 cut(s) 152
Bsp1286I GDGCHC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 55
BspACI CCGC 3 cut(s) 218, 249, 278
BspANI GGCC 2 cut(s) 143, 242
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 1 cut(s) 25
BspT107I GGYRCC 1 cut(s) 121
BspTNI GGTCTC 1 cut(s) 152
BssNI GRCGYC 2 cut(s) 194, 246
Bst4CI ACNGT 2 cut(s) 100, 284
BstACI GRCGYC 2 cut(s) 194, 246
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 152
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 17, 223, 248
BstSFI CTRYAG 1 cut(s) 21
BstSLI GKGCMC 1 cut(s) 228
BstUI CGCG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 7
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 2 cut(s) 143, 242
BtrI CACGTC 1 cut(s) 205
BtsCI GGATG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 185
CpoI CGGWCCG 1 cut(s) 185
CseI GACGC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 122
CspI CGGWCCG 1 cut(s) 185
CviJI RGCY 5 cut(s) 5, 20, 47, 143, 242
CviKI_1 RGCY 5 cut(s) 5, 20, 47, 143, 242
CviQI GTAC 1 cut(s) 122
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
EaeI YGGCCR 2 cut(s) 141, 240
EagI CGGCCG 1 cut(s) 141
EclXI CGGCCG 1 cut(s) 141
Eco31I GGTCTC 1 cut(s) 152
Eco47I GGWCC 1 cut(s) 185
Eco52I CGGCCG 1 cut(s) 141
FaiI YATR 2 cut(s) 90, 134
FaqI GGGAC 1 cut(s) 270
Fnu4HI GCNGC 5 cut(s) 6, 9, 21, 218, 249
FokI GGATG 1 cut(s) 71
Fsp4HI GCNGC 5 cut(s) 6, 9, 21, 218, 249
GluI GCNGC 5 cut(s) 6, 9, 21, 218, 249
HaeIII GGCC 2 cut(s) 143, 242
HapII CCGG 2 cut(s) 56, 188
HgaI GACGC 1 cut(s) 254
Hin1I GRCGYC 2 cut(s) 194, 246
HindIII AAGCTT 1 cut(s) 45
HinfI GANTC 3 cut(s) 52, 274, 291
HpaII CCGG 2 cut(s) 56, 188
Hpy166II GTNNAC 3 cut(s) 75, 198, 226
Hpy188III TCNNGA 1 cut(s) 56
Hpy8I GTNNAC 3 cut(s) 75, 198, 226
Hpy99I CGWCG 4 cut(s) 149, 196, 209, 248
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 2 cut(s) 100, 284
HpyCH4IV ACGT 2 cut(s) 194, 204
HpyCH4V TGCA 3 cut(s) 23, 105, 226
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 223, 248
HpySE526I ACGT 2 cut(s) 194, 204
Hsp92I GRCGYC 2 cut(s) 194, 246
Kpn2I TCCGGA 1 cut(s) 55
KpnI GGTACC 1 cut(s) 125
LpnPI CCDG 3 cut(s) 69, 201, 214
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 2 cut(s) 49, 270
MaeII ACGT 2 cut(s) 194, 204
MaeIII GTNAC 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 1 cut(s) 234
MnlI CCTC 1 cut(s) 105
MroI TCCGGA 1 cut(s) 55
MseI TTAA 1 cut(s) 116
MslI CAYNNNNRTG 1 cut(s) 207
MspI CCGG 2 cut(s) 56, 188
MvnI CGCG 1 cut(s) 220
MwoI GCNNNNNNNGC 3 cut(s) 17, 223, 248
NlaIV GGNNCC 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 207
PfeI GAWTC 3 cut(s) 52, 274, 291
PkrI GCNGC 5 cut(s) 7, 10, 22, 219, 250
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 185
PstI CTGCAG 1 cut(s) 25
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 1 cut(s) 207
Rsr2I CGGWCCG 1 cut(s) 185
RsrII CGGWCCG 1 cut(s) 185
SaqAI TTAA 1 cut(s) 116
SatI GCNGC 5 cut(s) 6, 9, 21, 218, 249
Sau96I GGNCC 1 cut(s) 185
SduI GDGCHC 1 cut(s) 228
SetI ASST 6 cut(s) 22, 49, 116, 123, 197, 207
SfaNI GCATC 2 cut(s) 49, 270
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 185
SmiMI CAYNNNNRTG 1 cut(s) 207
Sse9I AATT 1 cut(s) 234
SsiI CCGC 3 cut(s) 218, 249, 278
TaaI ACNGT 2 cut(s) 100, 284
TaiI ACGT 2 cut(s) 197, 207
TaqI TCGA 4 cut(s) 38, 50, 264, 294
TaqII GACCGA 1 cut(s) 173
TasI AATT 1 cut(s) 234
TauI GCSGC 2 cut(s) 220, 251
TfiI GAWTC 3 cut(s) 52, 274, 291
Tru1I TTAA 1 cut(s) 116
Tru9I TTAA 1 cut(s) 116
TscAI CASTG 1 cut(s) 287
TseI GCWGC 3 cut(s) 5, 8, 20
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 287
VneI GTGCAC 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 185
ZraI GACGTC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.