RLG00000029662

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0016448
Physical Location & Seq
Reverse (-)
42467688 .. 42468144
457 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029662

Sequence Viewer

Length: 342 bp
ATGACCCCGAGAGTGTGTGAAAAATCCAATCGGATTGGAAAACATAAATTTCCAAACACGAAGTTTCCAAAACAAGAACTCTATGAATTAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGACTGGGAGGACCTGATCGGCGTTGGGAGAAGCAAACGAAGGATCACGTGACTTCGATCCTGTCCGAGGAGGAGGAGGCCACGACCATGGCCTTGGCGGGTCGGGTCGGGAGAGTCCGAAAGCGAGAGAAGGAGGGGAGAGAGGGAAGGAAGGAGCGTCAGTTGGAGTTTGGTGGTGGAGTTAGTGTGAAGGAAGCTTTTGGAGCCAAGACTCCTCCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.3

Weight (kDa)

11.19

Isoelectric Point (pI)

94.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 168, 169
AcsI RAATTY 1 cut(s) 47
AcvI CACGTG 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 184
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 2 cut(s) 168, 169
Ama87I CYCGRG 1 cut(s) 7
AoxI GGCC 2 cut(s) 195, 207
ApoI RAATTY 1 cut(s) 47
ArsI GACNNNNNNTTYG 1 cut(s) 319
AspS9I GGNCC 1 cut(s) 128
AvaI CYCGRG 1 cut(s) 7
AvaII GGWCC 1 cut(s) 128
BbrPI CACGTG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 128
BmeT110I CYCGRG 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 322
BmrI ACTGGG 1 cut(s) 131
BmuI ACTGGG 1 cut(s) 131
BpiI GAAGAC 1 cut(s) 124
BsaAI YACGTR 1 cut(s) 166
BsaJI CCNNGG 3 cut(s) 183, 204, 210
BsaXI ACNNNNNCTCC 4 cut(s) 263, 288, 293, 318
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 1 cut(s) 126
BseDI CCNNGG 3 cut(s) 183, 204, 210
BseLI CCNNNNNNNGG 1 cut(s) 184
BseNI ACTGG 1 cut(s) 126
BseRI GAGGAG 4 cut(s) 200, 203, 206, 321
BshFI GGCC 2 cut(s) 197, 209
BsiHKCI CYCGRG 1 cut(s) 7
BslI CCNNNNNNNGG 1 cut(s) 184
BsnI GGCC 2 cut(s) 197, 209
BsoBI CYCGRG 1 cut(s) 7
Bsp143I GATC 3 cut(s) 133, 160, 174
Bsp19I CCATGG 1 cut(s) 204
BspACI CCGC 1 cut(s) 215
BspANI GGCC 2 cut(s) 197, 209
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 2 cut(s) 168, 169
BsrI ACTGG 1 cut(s) 126
BssECI CCNNGG 3 cut(s) 183, 204, 210
BssMI GATC 3 cut(s) 133, 160, 174
BssT1I CCWWGG 2 cut(s) 204, 210
BstBAI YACGTR 1 cut(s) 166
BstDSI CCRYGG 1 cut(s) 204
BstENI CCTNNNNNAGG 1 cut(s) 182
BstKTI GATC 3 cut(s) 136, 163, 177
BstMBI GATC 3 cut(s) 133, 160, 174
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstV2I GAAGAC 1 cut(s) 124
BstXI CCANNNNNNTGG 2 cut(s) 205, 211
BsuRI GGCC 2 cut(s) 197, 209
BtgI CCRYGG 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 128
CseI GACGC 1 cut(s) 263
CviAII CATG 1 cut(s) 205
CviJI RGCY 4 cut(s) 197, 209, 314, 323
CviKI_1 RGCY 4 cut(s) 197, 209, 314, 323
DpnI GATC 3 cut(s) 135, 162, 176
DpnII GATC 3 cut(s) 133, 160, 174
Eco130I CCWWGG 2 cut(s) 204, 210
Eco47I GGWCC 1 cut(s) 128
Eco72I CACGTG 1 cut(s) 166
Eco88I CYCGRG 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 128
EcoT14I CCWWGG 2 cut(s) 204, 210
ErhI CCWWGG 2 cut(s) 204, 210
FaeI CATG 1 cut(s) 208
FaiI YATR 3 cut(s) 45, 84, 206
FatI CATG 1 cut(s) 204
FauI CCCGC 1 cut(s) 208
HaeIII GGCC 2 cut(s) 197, 209
HgaI GACGC 1 cut(s) 263
Hin1II CATG 1 cut(s) 208
HindIII AAGCTT 1 cut(s) 312
HinfI GANTC 2 cut(s) 231, 328
Hpy188I TCNGA 3 cut(s) 33, 184, 236
Hpy188III TCNNGA 1 cut(s) 226
HpyAV CCTTC 5 cut(s) 151, 241, 258, 262, 301
HpyCH4IV ACGT 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 1 cut(s) 208
Kzo9I GATC 3 cut(s) 133, 160, 174
LmnI GCTCC 2 cut(s) 271, 320
LpnPI CCDG 3 cut(s) 107, 144, 191
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 166
MalI GATC 3 cut(s) 135, 162, 176
MboI GATC 3 cut(s) 133, 160, 174
MboII GAAGA 9 cut(s) 105, 108, 111, 114, 117, 120, 123, 126, 129
MluCI AATT 2 cut(s) 47, 86
MlyI GAGTC 2 cut(s) 240, 322
MmeI TCCRAC 1 cut(s) 261
MnlI CCTC 8 cut(s) 119, 178, 181, 184, 187, 244, 253, 342
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 320
NcoI CCATGG 1 cut(s) 204
NdeII GATC 3 cut(s) 133, 160, 174
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 166
PleI GAGTC 2 cut(s) 239, 322
PmaCI CACGTG 1 cut(s) 166
PmlI CACGTG 1 cut(s) 166
PpsI GAGTC 2 cut(s) 239, 322
Ppu21I YACGTR 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 128
Psp5II RGGWCCY 1 cut(s) 128
PspCI CACGTG 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 128
PspPPI RGGWCCY 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 3 cut(s) 133, 160, 174
Sau96I GGNCC 1 cut(s) 128
SchI GAGTC 2 cut(s) 240, 322
SetI ASST 3 cut(s) 133, 168, 316
SinI GGWCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 2 cut(s) 47, 86
SsiI CCGC 1 cut(s) 215
StyI CCWWGG 2 cut(s) 204, 210
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 173
TasI AATT 2 cut(s) 47, 86
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 182
XapI RAATTY 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.