Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039472.1

Orthogroup ID

OG0016448

Physical Location & Seq

Genomic Coordinates Forward (+)

287 .. 1260

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039472.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atgtttgttgttaggcctaatccagataaaacctcgggaggtgatcttgatggagatctttatcatgtgtgttgggacccaactttaattcctagcctaccatttgatgctgcggattatcctgcatcaaaaagttctgaattaaatgaggtcaagattgaggatgttgagaaatattttgtggaatacatgttaaaggacactttgggaaaaattacgaatgcgtggtatgtttctgcggatttaaatggagaaggtgcacggagttctcagtgtttagaccttgcacagctagcttcaaaggctgttgattctgcaaaaagtggtgaagatgtttccttaccattcttttatgggacatacccagatttcatggaaaagaatcctaatcagacctataaatcaaacaaagtgcttggaaaactttatcgtcagtggaagaccatggtgctagatgaatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

154

Amino Acids

17.28

Weight (kDa)

4.61

Isoelectric Point (pI)

32.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016448)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0471611
rosa_laevigata	RLG00000024160 RLG00000029662
rosa_multiflora	Rmu_co8438809.1_g000001 Rmu_sc0039472.1_g000001
rosa_roxburghii	Rroxscaffold_1G00036120
rosa_samantha	Rh3AG169400 Rh3BG195100 Rh3CG185800 Rh3DG179800 Rh4BG123500 Rh5DG379000 Rh6DG256900 Rh7BG292300
rosa_wichuraiana	Rw0G008930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	113, 239
AflIII	ACRYGT	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	300
AluBI	AGCT	2 cut(s)	292, 296
AluI	AGCT	2 cut(s)	292, 296
Alw21I	GWGCWC	1 cut(s)	262
Alw44I	GTGCAC	1 cut(s)	258
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	1 cut(s)	14
ApaLI	GTGCAC	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	76
AsuHPI	GGTGA	2 cut(s)	53, 338
AsuNHI	GCTAGC	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	262
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	1 cut(s)	44
BfaI	CTAG	3 cut(s)	93, 293, 452
BglII	AGATCT	1 cut(s)	55
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	77, 78
BmsI	GCATC	2 cut(s)	97, 134
BmtI	GCTAGC	1 cut(s)	296
BpiI	GAAGAC	1 cut(s)	446
BsaBI	GATNNNNATC	2 cut(s)	54, 60
BsaJI	CCNNGG	2 cut(s)	33, 444
Bse8I	GATNNNNATC	2 cut(s)	54, 60
BseDI	CCNNGG	2 cut(s)	33, 444
BseGI	GGATG	1 cut(s)	169
BseJI	GATNNNNATC	2 cut(s)	54, 60
BseMII	CTCAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	1 cut(s)	97
BshFI	GGCC	1 cut(s)	16
BsiHKAI	GWGCWC	1 cut(s)	262
BsiHKCI	CYCGRG	1 cut(s)	34
BslFI	GGGAC	2 cut(s)	89, 370
BsmFI	GGGAC	2 cut(s)	89, 370
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	16
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	2 cut(s)	43, 55
Bsp19I	CCATGG	1 cut(s)	444
BspACI	CCGC	2 cut(s)	113, 239
BspANI	GGCC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	77, 78
BspOI	GCTAGC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	33, 444
BssMI	GATC	2 cut(s)	43, 55
BssT1I	CCWWGG	1 cut(s)	444
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	270, 462
BstDSI	CCRYGG	1 cut(s)	444
BstF5I	GGATG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	46, 58
BstMBI	GATC	2 cut(s)	43, 55
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstNSI	RCATGY	1 cut(s)	193
BstSLI	GKGCMC	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	446
BstX2I	RGATCY	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	16
BtgI	CCRYGG	1 cut(s)	444
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	278, 440
Cac8I	GCNNGC	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	76
CviAII	CATG	4 cut(s)	65, 190, 373, 445
CviJI	RGCY	5 cut(s)	16, 96, 292, 296, 305
CviKI_1	RGCY	5 cut(s)	16, 96, 292, 296, 305
DdeI	CTNAG	2 cut(s)	270, 462
DpnI	GATC	2 cut(s)	45, 57
DpnII	GATC	2 cut(s)	43, 55
DraI	TTTAAA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	444
Eco147I	AGGCCT	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	444
FaeI	CATG	4 cut(s)	68, 193, 376, 448
FaiI	YATR	8 cut(s)	66, 191, 231, 354, 361, 374, 399, 446
FaqI	GGGAC	2 cut(s)	89, 370
FatI	CATG	4 cut(s)	64, 189, 372, 444
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	1 cut(s)	176
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	3 cut(s)	93, 293, 452
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	16
Hin1II	CATG	4 cut(s)	68, 193, 376, 448
HinfI	GANTC	3 cut(s)	311, 382, 458
HphI	GGTGA	2 cut(s)	53, 338
Hpy166II	GTNNAC	1 cut(s)	260
Hpy188I	TCNGA	2 cut(s)	139, 393
Hpy188III	TCNNGA	4 cut(s)	23, 36, 47, 154
Hpy8I	GTNNAC	1 cut(s)	260
HpyAV	CCTTC	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	125, 260, 287, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
HpyF3I	CTNAG	2 cut(s)	270, 462
Hsp92II	CATG	4 cut(s)	68, 193, 376, 448
KflI	GGGWCCC	1 cut(s)	76
Kzo9I	GATC	2 cut(s)	43, 55
LpnPI	CCDG	3 cut(s)	36, 135, 378
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	2 cut(s)	97, 134
MaeI	CTAG	3 cut(s)	93, 293, 452
MalI	GATC	2 cut(s)	45, 57
MboI	GATC	2 cut(s)	43, 55
MboII	GAAGA	2 cut(s)	341, 451
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	3 cut(s)	87, 140, 213
MnlI	CCTC	4 cut(s)	32, 43, 142, 154
MseI	TTAA	4 cut(s)	86, 143, 194, 245
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NcoI	CCATGG	1 cut(s)	444
NdeII	GATC	2 cut(s)	43, 55
NheI	GCTAGC	1 cut(s)	292
NlaIII	CATG	4 cut(s)	68, 193, 376, 448
NlaIV	GGNNCC	2 cut(s)	77, 78
NspI	RCATGY	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	16
PciI	ACATGT	1 cut(s)	189
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	311, 382, 458
PkrI	GCNGC	1 cut(s)	112
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	189
Psp5II	RGGWCCY	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	77, 78
PspPI	GGNCC	1 cut(s)	76
PspPPI	RGGWCCY	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	55
SaqAI	TTAA	4 cut(s)	86, 143, 194, 245
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	43, 55
Sau96I	GGNCC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	262
SetI	ASST	8 cut(s)	35, 43, 153, 259, 285, 294, 298, 398
SfaNI	GCATC	2 cut(s)	97, 134
SinI	GGWCC	1 cut(s)	76
SmiI	ATTTAAAT	1 cut(s)	246
Sse9I	AATT	3 cut(s)	87, 140, 213
SseBI	AGGCCT	1 cut(s)	16
SsiI	CCGC	2 cut(s)	113, 239
SspI	AATATT	1 cut(s)	176
SspMI	CTAG	3 cut(s)	93, 293, 452
StuI	AGGCCT	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	444
SwaI	ATTTAAAT	1 cut(s)	246
TasI	AATT	3 cut(s)	87, 140, 213
TfiI	GAWTC	3 cut(s)	311, 382, 458
Tru1I	TTAA	4 cut(s)	86, 143, 194, 245
Tru9I	TTAA	4 cut(s)	86, 143, 194, 245
TscAI	CASTG	2 cut(s)	278, 440
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	361
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	278, 440
VneI	GTGCAC	1 cut(s)	258
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	193
XspI	CTAG	3 cut(s)	93, 293, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.