Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0471611 |
| rosa_laevigata | RLG00000024160 RLG00000029662 |
| rosa_multiflora | Rmu_co8438809.1_g000001 Rmu_sc0039472.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00036120 |
| rosa_samantha | Rh3AG169400 Rh3BG195100 Rh3CG185800 Rh3DG179800 Rh4BG123500 Rh5DG379000 Rh6DG256900 Rh7BG292300 |
| rosa_wichuraiana | Rw0G008930 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1469 |
| AccB1I | GGYRCC | 1 cut(s) | 420 |
| AccI | GTMKAC | 1 cut(s) | 1990 |
| AccIII | TCCGGA | 1 cut(s) | 305 |
| AciI | CCGC | 6 cut(s) | 557, 689, 829, 2256, 2528, 2654 |
| AclWI | GGATC | 6 cut(s) | 485, 498, 671, 687, 1106, 1796 |
| AcoI | YGGCCR | 1 cut(s) | 802 |
| AcsI | RAATTY | 5 cut(s) | 309, 820, 1016, 1067, 1389 |
| AcuI | CTGAAG | 3 cut(s) | 356, 527, 1528 |
| AdeI | CACNNNGTG | 1 cut(s) | 487 |
| AfaI | GTAC | 3 cut(s) | 921, 1269, 1907 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 394, 430, 2061 |
| AflII | CTTAAG | 1 cut(s) | 1738 |
| AflIII | ACRYGT | 5 cut(s) | 809, 1618, 1625, 1642, 2604 |
| AhlI | ACTAGT | 1 cut(s) | 110 |
| AjiI | CACGTC | 1 cut(s) | 1626 |
| AleI | CACNNNNGTG | 1 cut(s) | 1740 |
| Alw21I | GWGCWC | 2 cut(s) | 133, 2677 |
| Alw26I | GTCTC | 2 cut(s) | 1739, 2340 |
| Alw44I | GTGCAC | 1 cut(s) | 2673 |
| AlwI | GGATC | 6 cut(s) | 485, 498, 671, 687, 1106, 1796 |
| Ama87I | CYCGRG | 3 cut(s) | 588, 1725, 2449 |
| Aor13HI | TCCGGA | 1 cut(s) | 305 |
| AoxI | GGCC | 6 cut(s) | 339, 685, 772, 802, 1722, 2429 |
| ApaLI | GTGCAC | 1 cut(s) | 2673 |
| ApeKI | GCWGC | 6 cut(s) | 299, 1190, 1193, 1574, 1613, 2525 |
| ApoI | RAATTY | 5 cut(s) | 309, 820, 1016, 1067, 1389 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1241, 1273 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1389 |
| AspLEI | GCGC | 2 cut(s) | 481, 1470 |
| AspS9I | GGNCC | 5 cut(s) | 5, 686, 1001, 1723, 2491 |
| AsuC2I | CCSGG | 3 cut(s) | 1726, 1727, 2343 |
| AsuHPI | GGTGA | 8 cut(s) | 163, 265, 711, 748, 1610, 2146, 2468, 2753 |
| AsuNHI | GCTAGC | 1 cut(s) | 2707 |
| AvaI | CYCGRG | 3 cut(s) | 588, 1725, 2449 |
| AvaII | GGWCC | 3 cut(s) | 5, 1001, 2491 |
| AxyI | CCTNAGG | 1 cut(s) | 9 |
| BaeGI | GKGCMC | 1 cut(s) | 2677 |
| BalI | TGGCCA | 1 cut(s) | 804 |
| BamHI | GGATCC | 1 cut(s) | 490 |
| BanI | GGYRCC | 1 cut(s) | 420 |
| BauI | CACGAG | 2 cut(s) | 482, 566 |
| BbsI | GAAGAC | 4 cut(s) | 806, 1666, 1932, 2861 |
| Bbv12I | GWGCWC | 2 cut(s) | 133, 2677 |
| BbvI | GCAGC | 6 cut(s) | 311, 1177, 1205, 1586, 1625, 2512 |
| BccI | CCATC | 9 cut(s) | 605, 766, 857, 1406, 1529, 1676, 2162, 2176, 2459 |
| BceAI | ACGGC | 2 cut(s) | 1884, 2379 |
| BcnI | CCSGG | 3 cut(s) | 1726, 1727, 2343 |
| BcoDI | GTCTC | 2 cut(s) | 1739, 2340 |
| BcuI | ACTAGT | 1 cut(s) | 110 |
| BfmI | CTRYAG | 2 cut(s) | 783, 1191 |
| BfrI | CTTAAG | 1 cut(s) | 1738 |
| BglII | AGATCT | 1 cut(s) | 2470 |
| BisI | GCNGC | 7 cut(s) | 300, 830, 1191, 1194, 1575, 1614, 2526 |
| BlpI | GCTNAGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 7 cut(s) | 301, 831, 1192, 1195, 1576, 1615, 2527 |
| Bme1390I | CCNGG | 3 cut(s) | 1726, 1727, 2343 |
| Bme18I | GGWCC | 3 cut(s) | 5, 1001, 2491 |
| BmeT110I | CYCGRG | 3 cut(s) | 588, 1725, 2449 |
| BmgBI | CACGTC | 1 cut(s) | 1626 |
| BmgT120I | GGNCC | 5 cut(s) | 5, 686, 1001, 1723, 2491 |
| BmiI | GGNNCC | 6 cut(s) | 6, 422, 492, 1203, 2492, 2493 |
| BmrFI | CCNGG | 3 cut(s) | 1726, 1727, 2343 |
| BmtI | GCTAGC | 1 cut(s) | 2711 |
| BpiI | GAAGAC | 4 cut(s) | 806, 1666, 1932, 2861 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1503 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 2 cut(s) | 1423, 1903 |
| BpuMI | CCSGG | 3 cut(s) | 1726, 1727, 2343 |
| BsaAI | YACGTR | 1 cut(s) | 1274 |
| BsaBI | GATNNNNATC | 2 cut(s) | 2469, 2475 |
| BsaJI | CCNNGG | 5 cut(s) | 587, 659, 1725, 2448, 2859 |
| BsaWI | WCCGGW | 2 cut(s) | 305, 721 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 394, 430, 2061 |
| Bse118I | RCCGGY | 1 cut(s) | 1775 |
| Bse1I | ACTGG | 2 cut(s) | 210, 2233 |
| Bse21I | CCTNAGG | 1 cut(s) | 9 |
| Bse8I | GATNNNNATC | 2 cut(s) | 2469, 2475 |
| BseAI | TCCGGA | 1 cut(s) | 305 |
| BseDI | CCNNGG | 5 cut(s) | 587, 659, 1725, 2448, 2859 |
| BseJI | GATNNNNATC | 2 cut(s) | 2469, 2475 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 394, 430, 2061 |
| BseMII | CTCAG | 6 cut(s) | 146, 883, 1061, 1494, 1692, 2699 |
| BseNI | ACTGG | 2 cut(s) | 210, 2233 |
| BseRI | GAGGAG | 2 cut(s) | 1349, 1962 |
| BseSI | GKGCMC | 1 cut(s) | 2677 |
| BseXI | GCAGC | 6 cut(s) | 311, 1177, 1205, 1586, 1625, 2512 |
| BshFI | GGCC | 6 cut(s) | 341, 687, 774, 804, 1724, 2431 |
| BshNI | GGYRCC | 1 cut(s) | 420 |
| BsiHKAI | GWGCWC | 2 cut(s) | 133, 2677 |
| BsiHKCI | CYCGRG | 3 cut(s) | 588, 1725, 2449 |
| BsiSI | CCGG | 7 cut(s) | 306, 722, 1562, 1726, 1776, 2055, 2342 |
| BslFI | GGGAC | 4 cut(s) | 18, 371, 2504, 2785 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 394, 430, 2061 |
| BsmAI | GTCTC | 2 cut(s) | 1739, 2340 |
| BsmFI | GGGAC | 4 cut(s) | 18, 371, 2504, 2785 |
| BsmI | GAATGC | 1 cut(s) | 1448 |
| BsnI | GGCC | 6 cut(s) | 341, 687, 774, 804, 1724, 2431 |
| BsoBI | CYCGRG | 3 cut(s) | 588, 1725, 2449 |
| Bsp1286I | GDGCHC | 2 cut(s) | 133, 2677 |
| Bsp13I | TCCGGA | 1 cut(s) | 305 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 132 |
| Bsp19I | CCATGG | 1 cut(s) | 2859 |
| BspACI | CCGC | 6 cut(s) | 557, 689, 829, 2256, 2528, 2654 |
| BspANI | GGCC | 6 cut(s) | 341, 687, 774, 804, 1724, 2431 |
| BspCNI | CTCAG | 6 cut(s) | 145, 882, 1060, 1495, 1693, 2698 |
| BspEI | TCCGGA | 1 cut(s) | 305 |
| BspLI | GGNNCC | 6 cut(s) | 6, 422, 492, 1203, 2492, 2493 |
| BspMAI | CTGCAG | 1 cut(s) | 1195 |
| BspOI | GCTAGC | 1 cut(s) | 2711 |
| BspPI | GGATC | 6 cut(s) | 485, 498, 671, 687, 1106, 1796 |
| BspT107I | GGYRCC | 1 cut(s) | 420 |
| BspTI | CTTAAG | 1 cut(s) | 1738 |
| BsrFI | RCCGGY | 1 cut(s) | 1775 |
| BsrI | ACTGG | 2 cut(s) | 210, 2233 |
| BssAI | RCCGGY | 1 cut(s) | 1775 |
| BssECI | CCNNGG | 5 cut(s) | 587, 659, 1725, 2448, 2859 |
| BssNAI | GTATAC | 1 cut(s) | 1991 |
| BssSI | CACGAG | 2 cut(s) | 482, 566 |
| BssT1I | CCWWGG | 1 cut(s) | 2859 |
| Bst1107I | GTATAC | 1 cut(s) | 1991 |
| Bst2BI | CACGAG | 2 cut(s) | 482, 566 |
| Bst4CI | ACNGT | 9 cut(s) | 64, 148, 294, 329, 534, 1892, 1905, 1998, 2402 |
| Bst6I | CTCTTC | 1 cut(s) | 2167 |
| BstAFI | CTTAAG | 1 cut(s) | 1738 |
| BstBAI | YACGTR | 1 cut(s) | 1274 |
| BstC8I | GCNNGC | 2 cut(s) | 689, 2709 |
| BstDEI | CTNAG | 9 cut(s) | 9, 132, 429, 869, 1047, 1503, 1701, 2685, 2877 |
| BstDSI | CCRYGG | 1 cut(s) | 2859 |
| BstHHI | GCGC | 2 cut(s) | 481, 1470 |
| BstMAI | GTCTC | 2 cut(s) | 1739, 2340 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1057, 1571, 1930, 2708, 2717 |
| BstNSI | RCATGY | 6 cut(s) | 813, 1258, 1622, 1646, 1734, 2608 |
| BstSCI | CCNGG | 3 cut(s) | 1724, 1725, 2341 |
| BstSFI | CTRYAG | 2 cut(s) | 783, 1191 |
| BstSLI | GKGCMC | 1 cut(s) | 2677 |
| BstSNI | TACGTA | 1 cut(s) | 1274 |
| BstV1I | GCAGC | 6 cut(s) | 311, 1177, 1205, 1586, 1625, 2512 |
| BstV2I | GAAGAC | 4 cut(s) | 806, 1666, 1932, 2861 |
| BstX2I | RGATCY | 3 cut(s) | 490, 663, 2470 |
| BstYI | RGATCY | 3 cut(s) | 490, 663, 2470 |
| BstZ17I | GTATAC | 1 cut(s) | 1991 |
| Bsu36I | CCTNAGG | 1 cut(s) | 9 |
| BsuRI | GGCC | 6 cut(s) | 341, 687, 774, 804, 1724, 2431 |
| BtgI | CCRYGG | 1 cut(s) | 2859 |
| BtrI | CACGTC | 1 cut(s) | 1626 |
| BtsI | GCAGTG | 1 cut(s) | 2199 |
| BtsIMutI | CAGTG | 7 cut(s) | 153, 299, 325, 435, 2199, 2693, 2855 |
| Cac8I | GCNNGC | 2 cut(s) | 689, 2709 |
| CfoI | GCGC | 2 cut(s) | 481, 1470 |
| Cfr10I | RCCGGY | 1 cut(s) | 1775 |
| Cfr13I | GGNCC | 5 cut(s) | 5, 686, 1001, 1723, 2491 |
| Cfr9I | CCCGGG | 1 cut(s) | 1725 |
| Csp6I | GTAC | 3 cut(s) | 920, 1268, 1906 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 483, 518 |
| CviQI | GTAC | 3 cut(s) | 920, 1268, 1906 |
| DdeI | CTNAG | 9 cut(s) | 9, 132, 429, 869, 1047, 1503, 1701, 2685, 2877 |
| DraI | TTTAAA | 2 cut(s) | 697, 2661 |
| DraIII | CACNNNGTG | 1 cut(s) | 487 |
| EaeI | YGGCCR | 1 cut(s) | 802 |
| Eam1104I | CTCTTC | 1 cut(s) | 2167 |
| EarI | CTCTTC | 1 cut(s) | 2167 |
| Eco105I | TACGTA | 1 cut(s) | 1274 |
| Eco130I | CCWWGG | 1 cut(s) | 2859 |
| Eco147I | AGGCCT | 1 cut(s) | 2431 |
| Eco32I | GATATC | 2 cut(s) | 1654, 1698 |
| Eco47I | GGWCC | 3 cut(s) | 5, 1001, 2491 |
| Eco57I | CTGAAG | 3 cut(s) | 356, 527, 1528 |
| Eco81I | CCTNAGG | 1 cut(s) | 9 |
| Eco88I | CYCGRG | 3 cut(s) | 588, 1725, 2449 |
| EcoO109I | RGGNCCY | 2 cut(s) | 5, 2491 |
| EcoRI | GAATTC | 1 cut(s) | 1389 |
| EcoRV | GATATC | 2 cut(s) | 1654, 1698 |
| EcoT14I | CCWWGG | 1 cut(s) | 2859 |
| EcoT22I | ATGCAT | 1 cut(s) | 395 |
| ErhI | CCWWGG | 1 cut(s) | 2859 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 510, 542, 1220, 1252, 1658, 1690 |
| FaqI | GGGAC | 4 cut(s) | 18, 371, 2504, 2785 |
| FauI | CCCGC | 2 cut(s) | 550, 696 |
| FauNDI | CATATG | 2 cut(s) | 949, 2391 |
| FblI | GTMKAC | 1 cut(s) | 1990 |
| Fnu4HI | GCNGC | 7 cut(s) | 300, 830, 1191, 1194, 1575, 1614, 2526 |
| Fsp4HI | GCNGC | 7 cut(s) | 300, 830, 1191, 1194, 1575, 1614, 2526 |
| FspI | TGCGCA | 1 cut(s) | 1469 |
| GlaI | GCGC | 2 cut(s) | 480, 1469 |
| GluI | GCNGC | 7 cut(s) | 300, 830, 1191, 1194, 1575, 1614, 2526 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 6 cut(s) | 341, 687, 774, 804, 1724, 2431 |
| HapII | CCGG | 7 cut(s) | 306, 722, 1562, 1726, 1776, 2055, 2342 |
| HhaI | GCGC | 2 cut(s) | 481, 1470 |
| Hin6I | GCGC | 2 cut(s) | 479, 1468 |
| HinP1I | GCGC | 2 cut(s) | 479, 1468 |
| HincII | GTYRAC | 1 cut(s) | 2001 |
| HindII | GTYRAC | 1 cut(s) | 2001 |
| HindIII | AAGCTT | 3 cut(s) | 524, 539, 992 |
| HpaII | CCGG | 7 cut(s) | 306, 722, 1562, 1726, 1776, 2055, 2342 |
| HphI | GGTGA | 8 cut(s) | 163, 265, 711, 748, 1610, 2146, 2468, 2753 |
| Hpy166II | GTNNAC | 7 cut(s) | 217, 1234, 1268, 1991, 2001, 2398, 2675 |
| Hpy8I | GTNNAC | 7 cut(s) | 217, 1234, 1268, 1991, 2001, 2398, 2675 |
| HpyAV | CCTTC | 7 cut(s) | 331, 1325, 2031, 2125, 2272, 2296, 2663 |
| HpyCH4III | ACNGT | 9 cut(s) | 64, 148, 294, 329, 534, 1892, 1905, 1998, 2402 |
| HpyCH4IV | ACGT | 2 cut(s) | 1273, 1625 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1057, 1571, 1930, 2708, 2717 |
| HpyF3I | CTNAG | 9 cut(s) | 9, 132, 429, 869, 1047, 1503, 1701, 2685, 2877 |
| HpySE526I | ACGT | 2 cut(s) | 1273, 1625 |
| HspAI | GCGC | 2 cut(s) | 479, 1468 |
| KflI | GGGWCCC | 1 cut(s) | 2491 |
| Kpn2I | TCCGGA | 1 cut(s) | 305 |
| LmnI | GCTCC | 1 cut(s) | 458 |
| Lsp1109I | GCAGC | 6 cut(s) | 311, 1177, 1205, 1586, 1625, 2512 |
| MaeII | ACGT | 2 cut(s) | 1273, 1625 |
| MfeI | CAATTG | 2 cut(s) | 1463, 2243 |
| MflI | RGATCY | 3 cut(s) | 490, 663, 2470 |
| MhlI | GDGCHC | 2 cut(s) | 133, 2677 |
| MlsI | TGGCCA | 1 cut(s) | 804 |
| MluNI | TGGCCA | 1 cut(s) | 804 |
| MlyI | GAGTC | 6 cut(s) | 861, 1297, 1610, 1741, 1894, 2258 |
| MmeI | TCCRAC | 1 cut(s) | 181 |
| Mox20I | TGGCCA | 1 cut(s) | 804 |
| Mph1103I | ATGCAT | 1 cut(s) | 395 |
| MroI | TCCGGA | 1 cut(s) | 305 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1389 |
| MscI | TGGCCA | 1 cut(s) | 804 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1740, 2297 |
| Msp20I | TGGCCA | 1 cut(s) | 804 |
| MspA1I | CMGCKG | 1 cut(s) | 1924 |
| MspCI | CTTAAG | 1 cut(s) | 1738 |
| MspI | CCGG | 7 cut(s) | 306, 722, 1562, 1726, 1776, 2055, 2342 |
| MspR9I | CCNGG | 3 cut(s) | 1726, 1727, 2343 |
| MunI | CAATTG | 2 cut(s) | 1463, 2243 |
| Mva1269I | GAATGC | 1 cut(s) | 1448 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1057, 1571, 1930, 2708, 2717 |
| NciI | CCSGG | 3 cut(s) | 1726, 1727, 2343 |
| NcoI | CCATGG | 1 cut(s) | 2859 |
| NdeI | CATATG | 2 cut(s) | 949, 2391 |
| NheI | GCTAGC | 1 cut(s) | 2707 |
| NlaIV | GGNNCC | 6 cut(s) | 6, 422, 492, 1203, 2492, 2493 |
| NmeAIII | GCCGAG | 2 cut(s) | 367, 1450 |
| NmuCI | GTSAC | 7 cut(s) | 323, 1153, 1216, 1621, 1733, 1857, 1886 |
| NsbI | TGCGCA | 1 cut(s) | 1469 |
| NsiI | ATGCAT | 1 cut(s) | 395 |
| NspI | RCATGY | 6 cut(s) | 813, 1258, 1622, 1646, 1734, 2608 |
| OliI | CACNNNNGTG | 1 cut(s) | 1740 |
| PceI | AGGCCT | 1 cut(s) | 2431 |
| PciI | ACATGT | 4 cut(s) | 809, 1618, 1642, 2604 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1270 |
| PctI | GAATGC | 1 cut(s) | 1448 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1389 |
| PflFI | GACNNNGTC | 1 cut(s) | 1750 |
| PfoI | TCCNGGA | 1 cut(s) | 2341 |
| PkrI | GCNGC | 7 cut(s) | 301, 831, 1192, 1195, 1576, 1615, 2527 |
| PleI | GAGTC | 6 cut(s) | 861, 1296, 1609, 1741, 1893, 2257 |
| PpsI | GAGTC | 6 cut(s) | 861, 1296, 1609, 1741, 1893, 2257 |
| Ppu21I | YACGTR | 1 cut(s) | 1274 |
| PpuMI | RGGWCCY | 2 cut(s) | 5, 2491 |
| PscI | ACATGT | 4 cut(s) | 809, 1618, 1642, 2604 |
| Psp5II | RGGWCCY | 2 cut(s) | 5, 2491 |
| PspN4I | GGNNCC | 6 cut(s) | 6, 422, 492, 1203, 2492, 2493 |
| PspPI | GGNCC | 5 cut(s) | 5, 686, 1001, 1723, 2491 |
| PspPPI | RGGWCCY | 2 cut(s) | 5, 2491 |
| PstI | CTGCAG | 1 cut(s) | 1195 |
| PsuI | RGATCY | 3 cut(s) | 490, 663, 2470 |
| PsyI | GACNNNGTC | 1 cut(s) | 1750 |
| PvuII | CAGCTG | 1 cut(s) | 1924 |
| RsaI | GTAC | 3 cut(s) | 921, 1269, 1907 |
| RsaNI | GTAC | 3 cut(s) | 920, 1268, 1906 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1740, 2297 |
| SatI | GCNGC | 7 cut(s) | 300, 830, 1191, 1194, 1575, 1614, 2526 |
| Sau96I | GGNCC | 5 cut(s) | 5, 686, 1001, 1723, 2491 |
| SchI | GAGTC | 6 cut(s) | 861, 1297, 1610, 1741, 1894, 2258 |
| ScrFI | CCNGG | 3 cut(s) | 1726, 1727, 2343 |
| SduI | GDGCHC | 2 cut(s) | 133, 2677 |
| SfcI | CTRYAG | 2 cut(s) | 783, 1191 |
| SinI | GGWCC | 3 cut(s) | 5, 1001, 2491 |
| SmaI | CCCGGG | 1 cut(s) | 1727 |
| SmiI | ATTTAAAT | 1 cut(s) | 2661 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1740, 2297 |
| SmlI | CTYRAG | 3 cut(s) | 1402, 1738, 1882 |
| SmoI | CTYRAG | 3 cut(s) | 1402, 1738, 1882 |
| SnaBI | TACGTA | 1 cut(s) | 1274 |
| SpeI | ACTAGT | 1 cut(s) | 110 |
| SrfI | GCCCGGGC | 1 cut(s) | 1727 |
| SseBI | AGGCCT | 1 cut(s) | 2431 |
| SsiI | CCGC | 6 cut(s) | 557, 689, 829, 2256, 2528, 2654 |
| SspI | AATATT | 2 cut(s) | 1243, 2591 |
| StuI | AGGCCT | 1 cut(s) | 2431 |
| StyD4I | CCNGG | 3 cut(s) | 1724, 1725, 2341 |
| StyI | CCWWGG | 1 cut(s) | 2859 |
| SwaI | ATTTAAAT | 1 cut(s) | 2661 |
| TaaI | ACNGT | 9 cut(s) | 64, 148, 294, 329, 534, 1892, 1905, 1998, 2402 |
| TaiI | ACGT | 2 cut(s) | 1276, 1628 |
| TaqI | TCGA | 2 cut(s) | 370, 1318 |
| TatI | WGTACW | 1 cut(s) | 1267 |
| TauI | GCSGC | 1 cut(s) | 832 |
| TscAI | CASTG | 7 cut(s) | 153, 299, 332, 442, 2206, 2693, 2855 |
| TseFI | GTSAC | 7 cut(s) | 323, 1153, 1216, 1621, 1733, 1857, 1886 |
| TseI | GCWGC | 6 cut(s) | 299, 1190, 1193, 1574, 1613, 2525 |
| Tsp45I | GTSAC | 7 cut(s) | 323, 1153, 1216, 1621, 1733, 1857, 1886 |
| TspGWI | ACGGA | 2 cut(s) | 1740, 2692 |
| TspMI | CCCGGG | 1 cut(s) | 1725 |
| TspRI | CASTG | 7 cut(s) | 153, 299, 332, 442, 2206, 2693, 2855 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1750 |
| Vha464I | CTTAAG | 1 cut(s) | 1738 |
| VneI | GTGCAC | 1 cut(s) | 2673 |
| VpaK11BI | GGWCC | 3 cut(s) | 5, 1001, 2491 |
| XapI | RAATTY | 5 cut(s) | 309, 820, 1016, 1067, 1389 |
| XbaI | TCTAGA | 2 cut(s) | 1009, 1943 |
| XceI | RCATGY | 6 cut(s) | 813, 1258, 1622, 1646, 1734, 2608 |
| XmaI | CCCGGG | 1 cut(s) | 1725 |
| XmiI | GTMKAC | 1 cut(s) | 1990 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1389 |
| Zsp2I | ATGCAT | 1 cut(s) | 395 |