Rroxscaffold_1G00036120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016448
Physical Location & Seq
Forward (+)
52757867 .. 52758142
276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00036120.1

Sequence Viewer

Length: 276 bp
ATGTGTTGGCGGAGCAGGAGAAAGAACGGTGAGGATAAGGAGGTGTCGAAGTCGGTGGAGGATCCGGACGGCGAGGGCTCGATGACGAGGTGTTGCTGCCGCTGCGTGACTTCGATCCGTCCAGGAGGCGGAGGCCACGACCATGGCCATGGCGGGTCTGGTCGGGAGAGTCCGAAAGCGAGAGAAGGAGGGGAGAGAGGAAGGAAAGAGGTTCAGTTGGAGTTTGGTGGTGGAGTTAGAGTGAAGGAAGCTCGGAGCCAAGACTCCTCTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.83

Weight (kDa)

8.72

Isoelectric Point (pI)

50.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 4 cut(s) 10, 100, 129, 153
AclWI GGATC 3 cut(s) 56, 69, 109
AcoI YGGCCR 1 cut(s) 145
AfiI CCNNNNNNNGG 1 cut(s) 128
AjnI CCWGG 1 cut(s) 121
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
AlwI GGATC 3 cut(s) 56, 69, 109
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 2 cut(s) 133, 145
ApeKI GCWGC 2 cut(s) 96, 102
AsuHPI GGTGA 1 cut(s) 41
BalI TGGCCA 1 cut(s) 147
BamHI GGATCC 1 cut(s) 61
BanII GRGCYC 1 cut(s) 80
BbvI GCAGC 2 cut(s) 83, 89
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 123
BisI GCNGC 3 cut(s) 97, 100, 103
BlsI GCNGC 3 cut(s) 98, 101, 104
Bme1390I CCNGG 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 63, 257
BmrFI CCNGG 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 142, 148
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 64
BseBI CCWGG 1 cut(s) 123
BseDI CCNNGG 2 cut(s) 142, 148
BseLI CCNNNNNNNGG 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 83, 89
BshFI GGCC 2 cut(s) 135, 147
BsiSI CCGG 1 cut(s) 65
BslI CCNNNNNNNGG 1 cut(s) 128
BsnI GGCC 2 cut(s) 135, 147
Bsp1286I GDGCHC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 61, 114
Bsp19I CCATGG 2 cut(s) 142, 148
BspACI CCGC 4 cut(s) 10, 100, 129, 153
BspANI GGCC 2 cut(s) 135, 147
BspEI TCCGGA 1 cut(s) 64
BspLI GGNNCC 2 cut(s) 63, 257
BspPI GGATC 3 cut(s) 56, 69, 109
BssECI CCNNGG 2 cut(s) 142, 148
BssMI GATC 2 cut(s) 61, 114
BssT1I CCWWGG 2 cut(s) 142, 148
Bst2UI CCWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 29
BstDSI CCRYGG 2 cut(s) 142, 148
BstKTI GATC 2 cut(s) 64, 117
BstMBI GATC 2 cut(s) 61, 114
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstNI CCWGG 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 121
BstV1I GCAGC 2 cut(s) 83, 89
BstX2I RGATCY 1 cut(s) 61
BstXI CCANNNNNNTGG 2 cut(s) 143, 149
BstYI RGATCY 1 cut(s) 61
BsuRI GGCC 2 cut(s) 135, 147
BtgI CCRYGG 2 cut(s) 142, 148
CviAII CATG 2 cut(s) 143, 149
CviJI RGCY 5 cut(s) 78, 135, 147, 251, 258
CviKI_1 RGCY 5 cut(s) 78, 135, 147, 251, 258
DpnI GATC 2 cut(s) 63, 116
DpnII GATC 2 cut(s) 61, 114
EaeI YGGCCR 1 cut(s) 145
EciI GGCGGA 2 cut(s) 25, 144
Eco130I CCWWGG 2 cut(s) 142, 148
Eco24I GRGCYC 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 142, 148
EcoT38I GRGCYC 1 cut(s) 80
ErhI CCWWGG 2 cut(s) 142, 148
FaeI CATG 2 cut(s) 146, 152
FaiI YATR 2 cut(s) 144, 150
FatI CATG 2 cut(s) 142, 148
FauI CCCGC 1 cut(s) 146
Fnu4HI GCNGC 3 cut(s) 97, 100, 103
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 3 cut(s) 97, 100, 103
GluI GCNGC 3 cut(s) 97, 100, 103
HaeIII GGCC 2 cut(s) 135, 147
HapII CCGG 1 cut(s) 65
Hin1II CATG 2 cut(s) 146, 152
HinfI GANTC 2 cut(s) 169, 263
HpaII CCGG 1 cut(s) 65
HphI GGTGA 1 cut(s) 41
Hpy188I TCNGA 2 cut(s) 174, 255
Hpy188III TCNNGA 2 cut(s) 65, 164
HpyAV CCTTC 3 cut(s) 179, 195, 238
HpyCH4III ACNGT 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
Hsp92II CATG 2 cut(s) 146, 152
Kpn2I TCCGGA 1 cut(s) 64
Kzo9I GATC 2 cut(s) 61, 114
LmnI GCTCC 2 cut(s) 12, 255
LpnPI CCDG 4 cut(s) 78, 108, 135, 144
Lsp1109I GCAGC 2 cut(s) 83, 89
MaeIII GTNAC 1 cut(s) 106
MalI GATC 2 cut(s) 63, 116
MboI GATC 2 cut(s) 61, 114
MflI RGATCY 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 80
MlsI TGGCCA 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 147
MlyI GAGTC 2 cut(s) 178, 257
MmeI TCCRAC 1 cut(s) 198
Mox20I TGGCCA 1 cut(s) 147
MroI TCCGGA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 147
MslI CAYNNNNRTG 2 cut(s) 141, 147
Msp20I TGGCCA 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 123
MvaI CCWGG 1 cut(s) 123
MwoI GCNNNNNNNGC 1 cut(s) 102
NcoI CCATGG 2 cut(s) 142, 148
NdeII GATC 2 cut(s) 61, 114
NlaIII CATG 2 cut(s) 146, 152
NlaIV GGNNCC 2 cut(s) 63, 257
NmuCI GTSAC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 121
PkrI GCNGC 3 cut(s) 98, 101, 104
PleI GAGTC 2 cut(s) 177, 257
PpsI GAGTC 2 cut(s) 177, 257
Psp6I CCWGG 1 cut(s) 121
PspGI CCWGG 1 cut(s) 121
PspN4I GGNNCC 2 cut(s) 63, 257
PsuI RGATCY 1 cut(s) 61
RseI CAYNNNNRTG 2 cut(s) 141, 147
SatI GCNGC 3 cut(s) 97, 100, 103
Sau3AI GATC 2 cut(s) 61, 114
SchI GAGTC 2 cut(s) 178, 257
ScrFI CCNGG 1 cut(s) 123
SduI GDGCHC 1 cut(s) 80
SetI ASST 4 cut(s) 45, 92, 213, 253
SmiMI CAYNNNNRTG 2 cut(s) 141, 147
SsiI CCGC 4 cut(s) 10, 100, 129, 153
StyD4I CCNGG 1 cut(s) 121
StyI CCWWGG 2 cut(s) 142, 148
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 47, 80, 113
TauI GCSGC 1 cut(s) 102
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 2 cut(s) 96, 102
Tsp45I GTSAC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.