RLG00000031077

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018929
Physical Location & Seq
Forward (+)
1819373 .. 1820071
699 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031077

Sequence Viewer

Length: 393 bp
ATGTCCAATCTGTTGGGGTTTTGTTCCCTCCCTGACTCATTACTTCACCAATATTCCCTTCTGGTTTTTCTCCTCACCATCACATTCTCCTCATCGGTTTTGTCTCAAGGTTACTTCACTACTAGTTTTTCTTCTTTATCTTCCAGAGGCGCGACTCGTGGCAACGATGTGGAGATGTCAAGTCTGGAGGAGGAGGACTGGAATTTGGGGCTTTCAATGGTGGAAGGATCGGAGGAGGAGGGTCTTCATTCGGGTTCGGCGGCACAACCGGCTCGGATGTGGAATCTTGAGGTTGGATTTGTACTAGAGATTGACGGTCAAGCAACGTATGGCTCTGCAGAGGAGAGTGTTCTATTTAAAGATGATTGGGCCAGATTTGACCGAAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.29

Weight (kDa)

4.17

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018929)

Species Orthologous Gene IDs
pyrus_communis pycom11g13530
rosa_laevigata RLG00000031077
rosa_multiflora Rmu_sc0005599.1_g000032
rosa_roxburghii Rroxscaffold_6G00390040
rosa_samantha Rh2BG389400 Rh2CG369100 Rh2DG406200 Rh3CG353100 Rh4BG158900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 152
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 235
AcsI RAATTY 1 cut(s) 202
AfaI GTAC 1 cut(s) 303
AgsI TTSAA 1 cut(s) 216
AhlI ACTAGT 1 cut(s) 122
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
Alw26I GTCTC 1 cut(s) 108
AlwI GGATC 1 cut(s) 235
AoxI GGCC 1 cut(s) 369
ApoI RAATTY 1 cut(s) 202
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 38, 67
BauI CACGAG 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 236
BccI CCATC 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 2 cut(s) 123, 305
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmgT120I GGNCC 1 cut(s) 369
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 206
BpuEI CTTGAG 2 cut(s) 90, 308
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 203
BseRI GAGGAG 7 cut(s) 62, 79, 203, 206, 248, 251, 356
Bsh1236I CGCG 1 cut(s) 152
BshFI GGCC 1 cut(s) 371
BsiSI CCGG 1 cut(s) 269
BsmAI GTCTC 1 cut(s) 108
BsnI GGCC 1 cut(s) 371
Bsp143I GATC 1 cut(s) 227
BspACI CCGC 1 cut(s) 260
BspANI GGCC 1 cut(s) 371
BspFNI CGCG 1 cut(s) 152
BspMAI CTGCAG 1 cut(s) 340
BspPI GGATC 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 268
BssMI GATC 1 cut(s) 227
BssSI CACGAG 1 cut(s) 156
Bst2BI CACGAG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 317
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 1 cut(s) 282
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 1 cut(s) 152
BstKTI GATC 1 cut(s) 230
BstMAI GTCTC 1 cut(s) 108
BstMBI GATC 1 cut(s) 227
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 236
BstXI CCANNNNNNTGG 1 cut(s) 13
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 282
CfoI GCGC 1 cut(s) 152
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 302
CviJI RGCY 4 cut(s) 211, 272, 333, 371
CviKI_1 RGCY 4 cut(s) 211, 272, 333, 371
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 1 cut(s) 390
DpnI GATC 1 cut(s) 229
DpnII GATC 1 cut(s) 227
DraI TTTAAA 1 cut(s) 358
FaiI YATR 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 289
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 2 cut(s) 123, 305
GlaI GCGC 1 cut(s) 151
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 152
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 35, 154, 283
HpaII CCGG 1 cut(s) 269
HphI GGTGA 2 cut(s) 38, 67
Hpy188I TCNGA 2 cut(s) 232, 276
Hpy188III TCNNGA 3 cut(s) 144, 185, 287
HpyAV CCTTC 2 cut(s) 68, 218
HpyCH4III ACNGT 1 cut(s) 317
HpyCH4IV ACGT 1 cut(s) 326
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 1 cut(s) 326
HspAI GCGC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 227
LpnPI CCDG 7 cut(s) 45, 47, 157, 170, 184, 282, 385
MaeI CTAG 2 cut(s) 123, 305
MaeII ACGT 1 cut(s) 326
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 229
MboI GATC 1 cut(s) 227
MboII GAAGA 3 cut(s) 123, 132, 236
MluCI AATT 1 cut(s) 202
MlyI GAGTC 2 cut(s) 29, 148
MmeI TCCRAC 1 cut(s) 274
MseI TTAA 1 cut(s) 357
MspI CCGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 2 cut(s) 29, 148
PpsI GAGTC 2 cut(s) 29, 148
PspPI GGNCC 1 cut(s) 369
PstI CTGCAG 1 cut(s) 340
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 1 cut(s) 227
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 2 cut(s) 29, 148
SetI ASST 3 cut(s) 112, 294, 329
SfcI CTRYAG 1 cut(s) 336
SmlI CTYRAG 2 cut(s) 105, 287
SmoI CTYRAG 2 cut(s) 105, 287
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 1 cut(s) 202
SsiI CCGC 1 cut(s) 260
SspI AATATT 1 cut(s) 53
SspMI CTAG 2 cut(s) 123, 305
TaaI ACNGT 1 cut(s) 317
TaiI ACGT 1 cut(s) 329
TasI AATT 1 cut(s) 202
TatI WGTACW 1 cut(s) 301
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 283
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TspDTI ATGAA 1 cut(s) 236
XapI RAATTY 1 cut(s) 202
XspI CTAG 2 cut(s) 123, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.