Rh3CG353100
ERF Family

BEST Arabidopsis thaliana protein match is alpha beta-Hydrolases superfamily protein (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018929
Physical Location & Seq
Forward (+)
42896172 .. 42910183
14012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG353100.1

Sequence Viewer

Length: 453 bp
ATGCCTAAATTTGCTGGTGACCTTGCGAAAGGCGCAACTCGTGGCAATGATGTGGAGATGTCAAATCTGGAGGAGGAGGACTGGAATTTGGGGCTTTCAATGGTGGAAGCTCGGAGGAGGAGGGTCTTCTTTCGAGTTCGGCAACTCAACTACCAGCTCGGATGTGAAATCTTAAGGTTGGATTTGTACCAGGAACTCGTTGAAGAGTTAAGGGTATTCTTTGACAGAGCTGGTTATGGCGAAAGTGATCCGTATCCCTCACGCCCAGTTAAGAGTGAAGCATATGATATTCAAGAACTAGCCGACACGTTGCAGATTGGGTCCAAATTCTATGTAATTGGAATCTCAATGGGGGCTTACCCTCTTTGGAGTTGCTTGAAATACATACCGCACATGCATGCTACTTACTTGAAAAGCAATGGCGCTATTGTTTTCTTTTTTTGTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 Hydrolase_4

Protein Analysis

150

Amino Acids

17.37

Weight (kDa)

5.28

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018929)

Species Orthologous Gene IDs
pyrus_communis pycom11g13530
rosa_laevigata RLG00000031077
rosa_multiflora Rmu_sc0005599.1_g000032
rosa_roxburghii Rroxscaffold_6G00390040
rosa_samantha Rh2BG389400 Rh2CG369100 Rh2DG406200 Rh3CG353100 Rh4BG158900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 389
AclWI GGATC 1 cut(s) 242
AcsI RAATTY 3 cut(s) 8, 85, 326
AfaI GTAC 1 cut(s) 188
AflII CTTAAG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 6 cut(s) 99, 203, 293, 379, 412, 449
AjnI CCWGG 1 cut(s) 189
AluBI AGCT 3 cut(s) 110, 157, 230
AluI AGCT 3 cut(s) 110, 157, 230
AlwI GGATC 1 cut(s) 242
ApoI RAATTY 3 cut(s) 8, 85, 326
AspLEI GCGC 2 cut(s) 35, 425
AspS9I GGNCC 1 cut(s) 321
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 321
BauI CACGAG 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 118
BciT130I CCWGG 1 cut(s) 191
BciVI GTATCC 1 cut(s) 264
BfaI CTAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 426
BfrI CTTAAG 1 cut(s) 172
BfuI GTATCC 1 cut(s) 264
Bme1390I CCNGG 1 cut(s) 191
Bme18I GGWCC 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 322
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 260
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 118
BpmI CTGGAG 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 252
Bse1I ACTGG 2 cut(s) 86, 266
Bse3DI GCAATG 2 cut(s) 52, 424
Bse8I GATNNNNATC 1 cut(s) 252
BseBI CCWGG 1 cut(s) 191
BseGI GGATG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 252
BseMI GCAATG 2 cut(s) 52, 424
BseNI ACTGG 2 cut(s) 86, 266
BseRI GAGGAG 4 cut(s) 86, 89, 130, 133
Bsp143I GATC 1 cut(s) 247
BspACI CCGC 1 cut(s) 389
BspLI GGNNCC 1 cut(s) 322
BspPI GGATC 1 cut(s) 242
BspTI CTTAAG 1 cut(s) 172
BsrDI GCAATG 2 cut(s) 52, 424
BsrI ACTGG 2 cut(s) 86, 266
BssMI GATC 1 cut(s) 247
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 191
Bst6I CTCTTC 1 cut(s) 198
BstAFI CTTAAG 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 399
BstEII GGTNACC 1 cut(s) 17
BstF5I GGATG 1 cut(s) 167
BstH2I RGCGCY 1 cut(s) 426
BstHHI GCGC 2 cut(s) 35, 425
BstKTI GATC 1 cut(s) 250
BstMBI GATC 1 cut(s) 247
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 191
BstNSI RCATGY 2 cut(s) 397, 401
BstPI GGTNACC 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 189
BstV2I GAAGAC 1 cut(s) 118
BsuI GTATCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 399
CfoI GCGC 2 cut(s) 35, 425
Cfr13I GGNCC 1 cut(s) 321
Csp6I GTAC 1 cut(s) 187
CviAII CATG 2 cut(s) 394, 398
CviJI RGCY 6 cut(s) 94, 110, 157, 230, 302, 356
CviKI_1 RGCY 6 cut(s) 94, 110, 157, 230, 302, 356
CviQI GTAC 1 cut(s) 187
DpnI GATC 1 cut(s) 249
DpnII GATC 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 321
Eco91I GGTNACC 1 cut(s) 17
EcoO65I GGTNACC 1 cut(s) 17
EcoRII CCWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 399
FaeI CATG 2 cut(s) 397, 401
FaiI YATR 7 cut(s) 237, 283, 285, 333, 386, 395, 399
FatI CATG 2 cut(s) 393, 397
FauNDI CATATG 1 cut(s) 283
FokI GGATG 1 cut(s) 174
FspBI CTAG 1 cut(s) 299
GlaI GCGC 2 cut(s) 34, 424
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 426
HhaI GCGC 2 cut(s) 35, 425
Hin1II CATG 2 cut(s) 397, 401
Hin6I GCGC 2 cut(s) 33, 423
HinP1I GCGC 2 cut(s) 33, 423
HinfI GANTC 1 cut(s) 342
HphI GGTGA 1 cut(s) 29
Hpy188I TCNGA 2 cut(s) 114, 161
Hpy188III TCNNGA 2 cut(s) 68, 293
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 2 cut(s) 313, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 2 cut(s) 397, 401
HspAI GCGC 2 cut(s) 33, 423
Kzo9I GATC 1 cut(s) 247
LpnPI CCDG 7 cut(s) 53, 67, 167, 176, 203, 216, 279
MaeI CTAG 1 cut(s) 299
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 1 cut(s) 17
MalI GATC 1 cut(s) 249
MboI GATC 1 cut(s) 247
MboII GAAGA 2 cut(s) 118, 215
MluCI AATT 4 cut(s) 8, 85, 326, 336
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 8 cut(s) 64, 67, 70, 108, 111, 114, 268, 372
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 3 cut(s) 173, 209, 270
MslI CAYNNNNRTG 1 cut(s) 396
MspCI CTTAAG 1 cut(s) 172
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeI CATATG 1 cut(s) 283
NdeII GATC 1 cut(s) 247
NlaIII CATG 2 cut(s) 397, 401
NlaIV GGNNCC 1 cut(s) 322
NmuCI GTSAC 1 cut(s) 17
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 2 cut(s) 397, 401
PaeI GCATGC 1 cut(s) 401
PfeI GAWTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 189
PspEI GGTNACC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 322
PspPI GGNCC 1 cut(s) 321
RsaI GTAC 1 cut(s) 188
RsaNI GTAC 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 396
SaqAI TTAA 3 cut(s) 173, 209, 270
Sau3AI GATC 1 cut(s) 247
Sau96I GGNCC 1 cut(s) 321
ScrFI CCNGG 1 cut(s) 191
SetI ASST 6 cut(s) 24, 112, 159, 179, 232, 311
SinI GGWCC 1 cut(s) 321
SmiMI CAYNNNNRTG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
SphI GCATGC 1 cut(s) 401
Sse9I AATT 4 cut(s) 8, 85, 326, 336
SsiI CCGC 1 cut(s) 389
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 189
TaiI ACGT 1 cut(s) 311
TaqI TCGA 1 cut(s) 133
TasI AATT 4 cut(s) 8, 85, 326, 336
TfiI GAWTC 1 cut(s) 342
Tru1I TTAA 3 cut(s) 173, 209, 270
Tru9I TTAA 3 cut(s) 173, 209, 270
TseFI GTSAC 1 cut(s) 17
Tsp45I GTSAC 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 240
Vha464I CTTAAG 1 cut(s) 172
VpaK11BI GGWCC 1 cut(s) 321
XapI RAATTY 3 cut(s) 8, 85, 326
XceI RCATGY 2 cut(s) 397, 401
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.