Rroxscaffold_6G00390040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018929
Physical Location & Seq
Forward (+)
4454114 .. 4456672
2559 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00390040.1

Sequence Viewer

Length: 432 bp
ATGTCCAATCCGTTGGGGTTTTGTTCCCTCCCCGACTCATTACTTCACCAATATTCCCTTCGGTTTTTCTCTTCACCATCACATTCTCCTCATCATAAGGATTGGTTTTATCTCAAGGTTACTTCACTACTAGTTTTTCTTCTTTATCTTCCGGAGGCTCAACTCGTGGCGGCGATGTGGAGATGTCAAGTCCGGAGGAGGAGGAGGACCGGAATTTGGGGCTTTCAATGGTGGAAGGCTCGGAGGAGGAGGGTCTTCATTTGGGTTCGGCAGCGTAACTACCGGCTCGGATGTGAATCTAGAGGTTGGATTTGTACCAGTGACCTTTGTCTAGCTTCAGCAATATTGTTGCGTGCCTGGTTGTCCGGATGCTTCAACAAGGTTAGAGCTCTGCGTAGACACTCGTTCACGAGAATGATACCGTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

17.17

Weight (kDa)

11.32

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018929)

Species Orthologous Gene IDs
pyrus_communis pycom11g13530
rosa_laevigata RLG00000031077
rosa_multiflora Rmu_sc0005599.1_g000032
rosa_roxburghii Rroxscaffold_6G00390040
rosa_samantha Rh2BG389400 Rh2CG369100 Rh2DG406200 Rh3CG353100 Rh4BG158900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 397
AccIII TCCGGA 3 cut(s) 151, 192, 365
AciI CCGC 1 cut(s) 170
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 1 cut(s) 321
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 2 cut(s) 227, 376
AhlI ACTAGT 1 cut(s) 130
AjnI CCWGG 1 cut(s) 356
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 2 cut(s) 335, 389
AluI AGCT 2 cut(s) 335, 389
Alw21I GWGCWC 1 cut(s) 391
Aor13HI TCCGGA 3 cut(s) 151, 192, 365
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 38, 66
AvaII GGWCC 1 cut(s) 207
BanII GRGCYC 1 cut(s) 391
BauI CACGAG 2 cut(s) 164, 409
BbsI GAAGAC 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 391
BbvI GCAGC 1 cut(s) 283
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 358
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 3 cut(s) 131, 300, 332
BisI GCNGC 2 cut(s) 171, 272
BlsI GCNGC 2 cut(s) 172, 273
Bme1390I CCNGG 1 cut(s) 358
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmrFI CCNGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 359
BoxI GACNNNNGTC 1 cut(s) 327
BpiI GAAGAC 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 295
BsaWI WCCGGW 4 cut(s) 151, 192, 209, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse118I RCCGGY 1 cut(s) 282
Bse1I ACTGG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 295
BseAI TCCGGA 3 cut(s) 151, 192, 365
BseBI CCWGG 1 cut(s) 358
BseGI GGATG 2 cut(s) 296, 374
BseJI GATNNNNATC 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 318
BseRI GAGGAG 6 cut(s) 78, 211, 214, 217, 259, 262
BseXI GCAGC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 5 cut(s) 152, 193, 210, 283, 366
BslI CCNNNNNNNGG 1 cut(s) 216
Bsp1286I GDGCHC 1 cut(s) 391
Bsp13I TCCGGA 3 cut(s) 151, 192, 365
BspACI CCGC 1 cut(s) 170
BspEI TCCGGA 3 cut(s) 151, 192, 365
BsrFI RCCGGY 1 cut(s) 282
BsrI ACTGG 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 282
BssSI CACGAG 2 cut(s) 164, 409
Bst2BI CACGAG 2 cut(s) 164, 409
Bst2UI CCWGG 1 cut(s) 358
Bst4CI ACNGT 1 cut(s) 423
Bst6I CTCTTC 1 cut(s) 76
BstC8I GCNNGC 1 cut(s) 354
BstF5I GGATG 2 cut(s) 296, 374
BstNI CCWGG 1 cut(s) 358
BstPAI GACNNNNGTC 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 283
BstV2I GAAGAC 1 cut(s) 247
BstXI CCANNNNNNTGG 1 cut(s) 13
BtgZI GCGATG 1 cut(s) 188
BtsCI GGATG 2 cut(s) 296, 374
BtsIMutI CAGTG 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 354
Cfr10I RCCGGY 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 207
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 429
CviJI RGCY 6 cut(s) 158, 222, 239, 286, 335, 389
CviKI_1 RGCY 6 cut(s) 158, 222, 239, 286, 335, 389
CviQI GTAC 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 391
Eco47I GGWCC 1 cut(s) 207
Eco53kI GAGCTC 1 cut(s) 389
Eco57I CTGAAG 1 cut(s) 321
EcoICRI GAGCTC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 356
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 391
FaeI CATG 1 cut(s) 432
FaiI YATR 3 cut(s) 96, 426, 430
FatI CATG 1 cut(s) 428
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 2 cut(s) 171, 272
FokI GGATG 2 cut(s) 303, 381
FriOI GRGCYC 1 cut(s) 391
Fsp4HI GCNGC 2 cut(s) 171, 272
FspBI CTAG 3 cut(s) 131, 300, 332
GluI GCNGC 2 cut(s) 171, 272
HapII CCGG 5 cut(s) 152, 193, 210, 283, 366
Hin1II CATG 1 cut(s) 432
HinfI GANTC 2 cut(s) 35, 296
HpaII CCGG 5 cut(s) 152, 193, 210, 283, 366
HphI GGTGA 2 cut(s) 38, 66
Hpy166II GTNNAC 2 cut(s) 398, 408
Hpy188I TCNGA 2 cut(s) 243, 290
Hpy188III TCNNGA 5 cut(s) 152, 193, 300, 366, 409
Hpy8I GTNNAC 2 cut(s) 398, 408
HpyAV CCTTC 2 cut(s) 68, 229
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4V TGCA 1 cut(s) 428
Hsp92II CATG 1 cut(s) 432
Kpn2I TCCGGA 3 cut(s) 151, 192, 365
LpnPI CCDG 8 cut(s) 165, 206, 223, 296, 331, 343, 370, 379
Lsp1109I GCAGC 1 cut(s) 283
LweI GCATC 1 cut(s) 359
MaeI CTAG 3 cut(s) 131, 300, 332
MaeIII GTNAC 3 cut(s) 118, 275, 320
MboII GAAGA 4 cut(s) 63, 131, 140, 247
MhlI GDGCHC 1 cut(s) 391
MluCI AATT 1 cut(s) 213
MlyI GAGTC 1 cut(s) 29
MmeI TCCRAC 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 430
MroI TCCGGA 3 cut(s) 151, 192, 365
MslI CAYNNNNRTG 1 cut(s) 413
MspI CCGG 5 cut(s) 152, 193, 210, 283, 366
MspR9I CCNGG 1 cut(s) 358
MvaI CCWGG 1 cut(s) 358
NlaIII CATG 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 430
PfeI GAWTC 1 cut(s) 296
PkrI GCNGC 2 cut(s) 172, 273
PleI GAGTC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 29
PshAI GACNNNNGTC 1 cut(s) 327
Psp124BI GAGCTC 1 cut(s) 391
Psp6I CCWGG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 356
PspPI GGNCC 1 cut(s) 207
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
RseI CAYNNNNRTG 1 cut(s) 413
SacI GAGCTC 1 cut(s) 391
SatI GCNGC 2 cut(s) 171, 272
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 358
SduI GDGCHC 1 cut(s) 391
SetI ASST 6 cut(s) 120, 307, 327, 337, 384, 391
SfaNI GCATC 1 cut(s) 359
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 413
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
SpeI ACTAGT 1 cut(s) 130
Sse9I AATT 1 cut(s) 213
SsiI CCGC 1 cut(s) 170
SspI AATATT 2 cut(s) 53, 345
SspMI CTAG 3 cut(s) 131, 300, 332
SstI GAGCTC 1 cut(s) 391
StyD4I CCNGG 1 cut(s) 356
TaaI ACNGT 1 cut(s) 423
TasI AATT 1 cut(s) 213
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 1 cut(s) 296
TscAI CASTG 1 cut(s) 325
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 1 cut(s) 247
TspRI CASTG 1 cut(s) 325
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 1 cut(s) 213
XbaI TCTAGA 1 cut(s) 299
XmiI GTMKAC 1 cut(s) 397
XspI CTAG 3 cut(s) 131, 300, 332
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.