RLG00000031511

Galactose binding lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016929
Physical Location & Seq
Reverse (-)
5743537 .. 5744782
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031511

Sequence Viewer

Length: 747 bp
ATGGGCAGCAAACGTTGGGTGGCATTGGTTCTGTTTGTGATCATAAGTTTTGAAGGCTATGTCATTGAAACAGTAAATTGTGCCACTGTGACATATGACCATAGCGCACTGGTTATTGAAGGGAAGAGGCAGGTTTTGCAGTCGGGTTCTATCCATTATCCTAGAGCCACCCCTGAGGTGTGGCCGGAGATTATTAATAAGGCCAAGGAAGGGGGATTGGATGTGATAGAGAGTTATGTTTTCTGGAACTATCATGAGCCTGTAAAAGGCCAGTACTACTTTGAGGGCAGGTTTGATTTGGTGAGGTTTGTGAAGACAGTGCAAGAAGCTGGCCTTCTATCTAGTTCATTTGAGGGGGATTTCATATTTGGTTACATTTTATTCCAGGAATTCAATTCCGTAGTACAAATGCACCTTTTAAGGTTGGTACATGTATTCTTGTCAGTGGAAACAGTTTCTCACAACGAATGCACAAGTTTCAAGTTGGTTTATATTGTGCCTTCTGAACTAGGGAACTCCTCTATTTGTCAAACGCAGAATGAAATGAAGCAATTTCTTGAAAAAATTGTTGAAATGATGAAGGAGGAGCATCTCTTCGCATCACAAGGGGGGCCGATCATTCTTGCTCAGGTTGAAAATGAATATGGAAATGTCGAATGGTCATATGGAGTTAGTGGAGAATTATATGTCAAATGGGCTGCAGAAACTGCTGTTAGTCTTAATACAAGTGTTCCTTGGGTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Gal_Lectin Glyco_hydro_35

Protein Analysis

249

Amino Acids

28.25

Weight (kDa)

5.02

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 37 - 120 3.4e-30 Glycosyl hydrolases family 35
Glyco_hydro_35 PF01301 180 - 248 2.9e-14 Glycosyl hydrolases family 35
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016929)

Species Orthologous Gene IDs
malus_domestica MD10G1301600.v1.1
prunus_persica Prupe.4G038600_v2.0.a1
pyrus_communis pycom10g25440
rosa_chinensis RchiOBHm_Chr5g0006691
rosa_laevigata RLG00000031417 RLG00000031511
rosa_multiflora Rmu_sc0017347.1_g000002 Rmu_sc0018387.1_g000009
rosa_roxburghii Rroxscaffold_1G00069330
rosa_rugosa Rorug04G0423700
rosa_samantha Rh5AG051500 Rh5CG059000
rosa_wichuraiana Rw5G005080 Rw5G005300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 121, 279
AclI AACGTT 1 cut(s) 13
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 389
AfaI GTAC 3 cut(s) 275, 405, 429
AfiI CCNNNNNNNGG 2 cut(s) 210, 266
AflIII ACRYGT 1 cut(s) 430
AgsI TTSAA 8 cut(s) 53, 68, 119, 394, 481, 560, 572, 635
AjnI CCWGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 707
AoxI GGCC 5 cut(s) 182, 201, 268, 331, 611
ApeKI GCWGC 2 cut(s) 6, 698
ApoI RAATTY 1 cut(s) 389
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 611
AsuHPI GGTGA 1 cut(s) 313
AxyI CCTNAGG 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 2 cut(s) 18, 685
BciT130I CCWGG 1 cut(s) 386
BclI TGATCA 1 cut(s) 39
BfaI CTAG 3 cut(s) 162, 342, 509
BfmI CTRYAG 1 cut(s) 699
BfuAI ACCTGC 2 cut(s) 121, 279
BisI GCNGC 2 cut(s) 7, 699
BlsI GCNGC 2 cut(s) 8, 700
BmcAI AGTACT 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 1 cut(s) 612
BmrFI CCNGG 1 cut(s) 386
BmsI GCATC 2 cut(s) 598, 608
BpiI GAAGAC 1 cut(s) 320
Bpu10I CCTNAGC 1 cut(s) 627
BsaJI CCNNGG 2 cut(s) 204, 734
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 266
Bse1I ACTGG 2 cut(s) 114, 271
Bse21I CCTNAGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 204, 734
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 210, 266
BseMII CTCAG 2 cut(s) 165, 641
BseNI ACTGG 2 cut(s) 114, 271
BseRI GAGGAG 2 cut(s) 508, 599
BseXI GCAGC 2 cut(s) 18, 685
BshFI GGCC 5 cut(s) 184, 203, 270, 333, 613
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 210, 266
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 5 cut(s) 184, 203, 270, 333, 613
Bsp143I GATC 2 cut(s) 39, 615
BspANI GGCC 5 cut(s) 184, 203, 270, 333, 613
BspCNI CTCAG 2 cut(s) 166, 640
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 2 cut(s) 121, 279
BsrI ACTGG 2 cut(s) 114, 271
BssECI CCNNGG 2 cut(s) 204, 734
BssMI GATC 2 cut(s) 39, 615
BssT1I CCWWGG 2 cut(s) 204, 734
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 4 cut(s) 73, 88, 319, 454
Bst6I CTCTTC 2 cut(s) 119, 599
BstAPI GCANNNNNTGC 2 cut(s) 136, 707
BstC8I GCNNGC 1 cut(s) 331
BstDEI CTNAG 2 cut(s) 174, 627
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 2 cut(s) 42, 618
BstMBI GATC 2 cut(s) 39, 615
BstMWI GCNNNNNNNGC 2 cut(s) 136, 707
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 2 cut(s) 18, 685
BstV2I GAAGAC 1 cut(s) 320
Bsu36I CCTNAGG 1 cut(s) 174
BsuRI GGCC 5 cut(s) 184, 203, 270, 333, 613
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 4 cut(s) 84, 107, 324, 450
BveI ACCTGC 2 cut(s) 121, 279
Cac8I GCNNGC 1 cut(s) 331
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 1 cut(s) 611
Csp6I GTAC 3 cut(s) 274, 404, 428
CviAII CATG 2 cut(s) 254, 431
CviQI GTAC 3 cut(s) 274, 404, 428
DdeI CTNAG 2 cut(s) 174, 627
DpnI GATC 2 cut(s) 41, 617
DpnII GATC 2 cut(s) 39, 615
EaeI YGGCCR 1 cut(s) 182
Eam1104I CTCTTC 2 cut(s) 119, 599
EarI CTCTTC 2 cut(s) 119, 599
Eco130I CCWWGG 2 cut(s) 204, 734
Eco81I CCTNAGG 1 cut(s) 174
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRI GAATTC 1 cut(s) 389
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 204, 734
ErhI CCWWGG 2 cut(s) 204, 734
FaeI CATG 2 cut(s) 257, 434
FalI AAGNNNNNCTT 3 cut(s) 318, 350, 718
FatI CATG 2 cut(s) 253, 430
FauNDI CATATG 2 cut(s) 94, 664
FbaI TGATCA 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 7, 699
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 2 cut(s) 7, 699
FspBI CTAG 3 cut(s) 162, 342, 509
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 7, 699
HaeIII GGCC 5 cut(s) 184, 203, 270, 333, 613
HapII CCGG 1 cut(s) 185
HhaI GCGC 1 cut(s) 107
Hin1II CATG 2 cut(s) 257, 434
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 505
Hpy188III TCNNGA 3 cut(s) 244, 254, 557
HpyAV CCTTC 6 cut(s) 47, 113, 203, 344, 510, 574
HpyCH4III ACNGT 4 cut(s) 73, 88, 319, 454
HpyCH4IV ACGT 1 cut(s) 13
HpyCH4V TGCA 5 cut(s) 139, 322, 412, 471, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 707
HpyF3I CTNAG 2 cut(s) 174, 627
HpySE526I ACGT 1 cut(s) 13
Hsp92II CATG 2 cut(s) 257, 434
HspAI GCGC 1 cut(s) 105
Ksp22I TGATCA 1 cut(s) 39
Kzo9I GATC 2 cut(s) 39, 615
LmnI GCTCC 1 cut(s) 586
Lsp1109I GCAGC 2 cut(s) 18, 685
LweI GCATC 2 cut(s) 598, 608
MaeI CTAG 3 cut(s) 162, 342, 509
MaeII ACGT 1 cut(s) 13
MaeIII GTNAC 2 cut(s) 88, 371
MalI GATC 2 cut(s) 41, 617
MboI GATC 2 cut(s) 39, 615
MboII GAAGA 3 cut(s) 136, 325, 586
MluCI AATT 6 cut(s) 76, 389, 394, 551, 564, 680
MnlI CCTC 7 cut(s) 120, 169, 277, 297, 346, 529, 577
MseI TTAA 3 cut(s) 195, 419, 720
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 386
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 136, 707
NdeI CATATG 2 cut(s) 94, 664
NdeII GATC 2 cut(s) 39, 615
NlaIII CATG 2 cut(s) 257, 434
NlaIV GGNNCC 1 cut(s) 612
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 434
PagI TCATGA 1 cut(s) 253
PciI ACATGT 1 cut(s) 430
PctI GAATGC 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 2 cut(s) 8, 700
PscI ACATGT 1 cut(s) 430
PshBI ATTAAT 1 cut(s) 195
Psp1406I AACGTT 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 1 cut(s) 612
PspPI GGNCC 1 cut(s) 611
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 275, 405, 429
RsaNI GTAC 3 cut(s) 274, 404, 428
SaqAI TTAA 3 cut(s) 195, 419, 720
SatI GCNGC 2 cut(s) 7, 699
Sau3AI GATC 2 cut(s) 39, 615
Sau96I GGNCC 1 cut(s) 611
ScaI AGTACT 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 386
SetI ASST 9 cut(s) 16, 135, 180, 293, 308, 331, 417, 425, 633
SfaNI GCATC 2 cut(s) 598, 608
SfcI CTRYAG 1 cut(s) 699
Sse9I AATT 6 cut(s) 76, 389, 394, 551, 564, 680
SspMI CTAG 3 cut(s) 162, 342, 509
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 2 cut(s) 204, 734
TaaI ACNGT 4 cut(s) 73, 88, 319, 454
TaiI ACGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 654
TasI AATT 6 cut(s) 76, 389, 394, 551, 564, 680
TatI WGTACW 2 cut(s) 273, 403
Tru1I TTAA 3 cut(s) 195, 419, 720
Tru9I TTAA 3 cut(s) 195, 419, 720
TscAI CASTG 4 cut(s) 91, 114, 324, 450
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 6, 698
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 6 cut(s) 336, 352, 555, 560, 593, 654
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 4 cut(s) 91, 114, 324, 450
VspI ATTAAT 1 cut(s) 195
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 1 cut(s) 389
XceI RCATGY 1 cut(s) 434
XspI CTAG 3 cut(s) 162, 342, 509
ZrmI AGTACT 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.