RLG00000032228

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018253
Physical Location & Seq
Forward (+)
12279297 .. 12280310
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032228

Sequence Viewer

Length: 963 bp
ATGTCTGATAAATTGAACAGAGATGCAGAGAAACGCTTGAAGATATGTCGAGCAACATTTGAGGATCAGGTCAAGGCGGTCCTGAAATTTGCGGATTTTAAGGAATCTAACCGCATAGCCTTAGACTTTGGCAAGTTTTATGTTGCTAAAAAGTCTGATCCTGCAACACCTGGGAGGCAGGAGTTCCTTTCTGAGATAAGAAATCCTGAATGGCCTTCTTCTGTTTCTAGGCCTTACTTTGAAAGAGTTGCTGCAATGCAAGGATATAATGCCACTAGAAATAGAAAGAGTGTAAGGCAATTGCTTGAAGAGCACCAGCCTGTGCCCGGAACAAAATTGGAGAGTCTAAAGGCTTATGCAGTTCATCTTGGGACTCAAATCTCTAAACATCTTGTCAAGCTCATACTGATGCTGAAGTCAGAAGGAATACCAGAAATGGTTCTAAAAATCAAGAACTTGGAGTCTCTGTTTCCTTTTTTACTGGAGTTGTTCACTTGCTCAGGTCCTGCTGGGTATGGAGTGGTTTACAGAAAGATAATCACAATCATAAGCCTAGCAGACCAAGAACTGAAGACGGTTCAAAATTTAAACCAAGGAAACATTGCTGATCAAGTTGTTACTAATTGGTATGCAAGCATGACAGAAGCAGAAATCGATGACATTCTCGATGACTTTGCAGAGATTATTGCAACATTGGAGTCTAATCTGAGCTTTCCACTGCTGTTGTTCGGCATTGCTTCTCCTAACTTATTTAGCCTGGAGAAAACTCACTTTTTACCTGTGGAGAACGATCTGAACGGCGTGCATGATATAGAGGGTGTGGATGATGTGGTGGGTATGGAAGAGGTGGTGGAAGGGATGGAGGAATTATACAATGATCAAAAGGATACTCCTACTTTAGTGAGGCAAGTTCTGGAGAAAATGAAAGGGCCCATAGAGCAAGTGTGGGAGGGTTTGACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022414 GO:0022613 GO:0022625 GO:0022626 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

321

Amino Acids

36.17

Weight (kDa)

5.06

Isoelectric Point (pI)

31.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018253)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032228
rosa_multiflora Rmu_sc0000012.1_g000010 Rmu_sc0000012.1_g000011
rosa_roxburghii Rroxscaffold_1G00060710
rosa_rugosa Rorug05G0029900 Rorug05G0029900
rosa_samantha Rh5AG123500 Rh5BG122400 Rh5CG133800 Rh5DG121800
rosa_wichuraiana Rw5G010660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 77, 92, 112
AclWI GGATC 2 cut(s) 72, 152
AcsI RAATTY 2 cut(s) 86, 583
AcuI CTGAAG 2 cut(s) 434, 590
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 5 cut(s) 16, 40, 242, 308, 581
AjnI CCWGG 2 cut(s) 169, 756
AluBI AGCT 2 cut(s) 400, 711
AluI AGCT 2 cut(s) 400, 711
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 2 cut(s) 72, 152
AlwNI CAGNNNCTG 1 cut(s) 506
AoxI GGCC 3 cut(s) 212, 230, 929
ApaI GGGCCC 1 cut(s) 933
ApeKI GCWGC 1 cut(s) 251
ApoI RAATTY 2 cut(s) 86, 583
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 4 cut(s) 79, 503, 929, 930
AsuC2I CCSGG 1 cut(s) 327
AvaII GGWCC 2 cut(s) 79, 503
BaeGI GKGCMC 2 cut(s) 327, 933
BanII GRGCYC 1 cut(s) 933
BbsI GAAGAC 1 cut(s) 578
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 238
BccI CCATC 1 cut(s) 853
BceAI ACGGC 1 cut(s) 814
BcgI CGANNNNNNTGC 2 cut(s) 656, 690
BciT130I CCWGG 2 cut(s) 171, 758
BciVI GTATCC 1 cut(s) 880
BclI TGATCA 2 cut(s) 607, 877
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 3 cut(s) 228, 276, 554
BfuI GTATCC 1 cut(s) 880
BisI GCNGC 1 cut(s) 252
BlsI GCNGC 1 cut(s) 253
Bme1390I CCNGG 3 cut(s) 171, 327, 758
Bme18I GGWCC 2 cut(s) 79, 503
BmgT120I GGNCC 4 cut(s) 79, 503, 929, 930
BmiI GGNNCC 1 cut(s) 931
BmrFI CCNGG 3 cut(s) 171, 327, 758
BmsI GCATC 2 cut(s) 13, 399
BpiI GAAGAC 1 cut(s) 578
BpmI CTGGAG 3 cut(s) 503, 779, 935
Bpu10I CCTNAGC 1 cut(s) 499
BpuMI CCSGG 1 cut(s) 327
Bsa29I ATCGAT 1 cut(s) 654
BsaJI CCNNGG 2 cut(s) 170, 592
BsaXI ACNNNNNCTCC 2 cut(s) 452, 482
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse1I ACTGG 1 cut(s) 486
Bse3DI GCAATG 3 cut(s) 261, 600, 732
BseBI CCWGG 2 cut(s) 171, 758
BseCI ATCGAT 1 cut(s) 654
BseDI CCNNGG 2 cut(s) 170, 592
BseGI GGATG 2 cut(s) 829, 864
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 3 cut(s) 261, 600, 732
BseMII CTCAG 3 cut(s) 183, 513, 698
BseNI ACTGG 1 cut(s) 486
BseSI GKGCMC 2 cut(s) 327, 933
BseXI GCAGC 1 cut(s) 238
BseYI CCCAGC 1 cut(s) 509
BshFI GGCC 3 cut(s) 214, 232, 931
BshVI ATCGAT 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 3 cut(s) 214, 232, 931
Bsp120I GGGCCC 1 cut(s) 929
Bsp1286I GDGCHC 3 cut(s) 315, 327, 933
Bsp143I GATC 5 cut(s) 64, 157, 607, 790, 877
BspACI CCGC 3 cut(s) 77, 92, 112
BspANI GGCC 3 cut(s) 214, 232, 931
BspCNI CTCAG 3 cut(s) 184, 512, 699
BspDI ATCGAT 1 cut(s) 654
BspLI GGNNCC 1 cut(s) 931
BspPI GGATC 2 cut(s) 72, 152
BspQI GCTCTTC 1 cut(s) 303
BsrDI GCAATG 3 cut(s) 261, 600, 732
BsrI ACTGG 1 cut(s) 486
BssECI CCNNGG 2 cut(s) 170, 592
BssMI GATC 5 cut(s) 64, 157, 607, 790, 877
BssT1I CCWWGG 1 cut(s) 592
Bst2UI CCWGG 2 cut(s) 171, 758
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 2 cut(s) 303, 837
BstC8I GCNNGC 2 cut(s) 634, 803
BstDEI CTNAG 4 cut(s) 121, 192, 499, 707
BstF5I GGATG 2 cut(s) 829, 864
BstKTI GATC 5 cut(s) 67, 160, 610, 793, 880
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 5 cut(s) 64, 157, 607, 790, 877
BstMWI GCNNNNNNNGC 2 cut(s) 310, 937
BstNI CCWGG 2 cut(s) 171, 758
BstSCI CCNGG 3 cut(s) 169, 325, 756
BstSLI GKGCMC 2 cut(s) 327, 933
BstV1I GCAGC 1 cut(s) 238
BstV2I GAAGAC 1 cut(s) 578
Bsu15I ATCGAT 1 cut(s) 654
BsuI GTATCC 1 cut(s) 880
BsuRI GGCC 3 cut(s) 214, 232, 931
BsuTUI ATCGAT 1 cut(s) 654
BtsCI GGATG 2 cut(s) 829, 864
BtsI GCAGTG 1 cut(s) 716
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 2 cut(s) 634, 803
CaiI CAGNNNCTG 1 cut(s) 506
Cfr13I GGNCC 4 cut(s) 79, 503, 929, 930
ClaI ATCGAT 1 cut(s) 654
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 3 cut(s) 637, 806, 960
DdeI CTNAG 4 cut(s) 121, 192, 499, 707
DpnI GATC 5 cut(s) 66, 159, 609, 792, 879
DpnII GATC 5 cut(s) 64, 157, 607, 790, 877
DraI TTTAAA 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 303, 837
EarI CTCTTC 2 cut(s) 303, 837
Eco130I CCWWGG 1 cut(s) 592
Eco147I AGGCCT 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 933
Eco47I GGWCC 2 cut(s) 79, 503
Eco57I CTGAAG 2 cut(s) 434, 590
EcoO109I RGGNCCY 2 cut(s) 503, 929
EcoRII CCWGG 2 cut(s) 169, 756
EcoT14I CCWWGG 1 cut(s) 592
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 3 cut(s) 640, 809, 963
FaqI GGGAC 1 cut(s) 385
FatI CATG 3 cut(s) 636, 805, 959
FbaI TGATCA 2 cut(s) 607, 877
Fnu4HI GCNGC 1 cut(s) 252
FokI GGATG 2 cut(s) 836, 871
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 1 cut(s) 252
FspBI CTAG 3 cut(s) 228, 276, 554
GluI GCNGC 1 cut(s) 252
GsaI CCCAGC 1 cut(s) 513
GsuI CTGGAG 3 cut(s) 503, 779, 935
HaeIII GGCC 3 cut(s) 214, 232, 931
HapII CCGG 1 cut(s) 327
Hin1II CATG 3 cut(s) 640, 809, 963
HinfI GANTC 5 cut(s) 104, 343, 373, 461, 698
HpaII CCGG 1 cut(s) 327
Hpy166II GTNNAC 2 cut(s) 492, 526
Hpy188I TCNGA 6 cut(s) 7, 157, 193, 421, 708, 795
Hpy188III TCNNGA 5 cut(s) 82, 206, 451, 665, 914
Hpy8I GTNNAC 2 cut(s) 492, 526
HpyAV CCTTC 3 cut(s) 225, 416, 848
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 9 cut(s) 26, 164, 254, 259, 359, 632, 677, 689, 805
HpyF10VI GCNNNNNNNGC 2 cut(s) 310, 937
HpyF3I CTNAG 4 cut(s) 121, 192, 499, 707
Hsp92II CATG 3 cut(s) 640, 809, 963
Ksp22I TGATCA 2 cut(s) 607, 877
Kzo9I GATC 5 cut(s) 64, 157, 607, 790, 877
LguI GCTCTTC 1 cut(s) 303
Lsp1109I GCAGC 1 cut(s) 238
LweI GCATC 2 cut(s) 13, 399
MaeI CTAG 3 cut(s) 228, 276, 554
MaeIII GTNAC 1 cut(s) 616
MalI GATC 5 cut(s) 66, 159, 609, 792, 879
MboI GATC 5 cut(s) 64, 157, 607, 790, 877
MboII GAAGA 5 cut(s) 52, 210, 320, 583, 854
MfeI CAATTG 1 cut(s) 299
MhlI GDGCHC 3 cut(s) 315, 327, 933
MluCI AATT 7 cut(s) 11, 86, 299, 335, 583, 622, 866
MlyI GAGTC 4 cut(s) 352, 367, 470, 707
MnlI CCTC 7 cut(s) 55, 168, 808, 838, 856, 897, 943
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 2 cut(s) 99, 587
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 1 cut(s) 327
MspR9I CCNGG 3 cut(s) 171, 327, 758
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 2 cut(s) 171, 758
MwoI GCNNNNNNNGC 2 cut(s) 310, 937
NciI CCSGG 1 cut(s) 327
NdeII GATC 5 cut(s) 64, 157, 607, 790, 877
NlaIII CATG 3 cut(s) 640, 809, 963
NlaIV GGNNCC 1 cut(s) 931
PceI AGGCCT 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 104
PkrI GCNGC 1 cut(s) 253
PleI GAGTC 4 cut(s) 351, 367, 469, 706
PpsI GAGTC 4 cut(s) 351, 367, 469, 706
PpuMI RGGWCCY 1 cut(s) 503
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 2 cut(s) 169, 756
PspFI CCCAGC 1 cut(s) 509
PspGI CCWGG 2 cut(s) 169, 756
PspN4I GGNNCC 1 cut(s) 931
PspOMI GGGCCC 1 cut(s) 929
PspPI GGNCC 4 cut(s) 79, 503, 929, 930
PspPPI RGGWCCY 1 cut(s) 503
PstNI CAGNNNCTG 1 cut(s) 506
RseI CAYNNNNRTG 1 cut(s) 407
SapI GCTCTTC 1 cut(s) 303
SaqAI TTAA 2 cut(s) 99, 587
SatI GCNGC 1 cut(s) 252
Sau3AI GATC 5 cut(s) 64, 157, 607, 790, 877
Sau96I GGNCC 4 cut(s) 79, 503, 929, 930
SchI GAGTC 4 cut(s) 352, 367, 470, 707
ScrFI CCNGG 3 cut(s) 171, 327, 758
SduI GDGCHC 3 cut(s) 315, 327, 933
SetI ASST 7 cut(s) 72, 172, 402, 505, 713, 781, 849
SfaNI GCATC 2 cut(s) 13, 399
SinI GGWCC 2 cut(s) 79, 503
SmiMI CAYNNNNRTG 1 cut(s) 407
Sse9I AATT 7 cut(s) 11, 86, 299, 335, 583, 622, 866
SseBI AGGCCT 1 cut(s) 232
SsiI CCGC 3 cut(s) 77, 92, 112
SspMI CTAG 3 cut(s) 228, 276, 554
StuI AGGCCT 1 cut(s) 232
StyD4I CCNGG 3 cut(s) 169, 325, 756
StyI CCWWGG 1 cut(s) 592
TaaI ACNGT 1 cut(s) 577
TaqI TCGA 3 cut(s) 49, 654, 666
TasI AATT 7 cut(s) 11, 86, 299, 335, 583, 622, 866
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 2 cut(s) 99, 587
Tru9I TTAA 2 cut(s) 99, 587
TscAI CASTG 1 cut(s) 723
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 353, 938
TspRI CASTG 1 cut(s) 723
VpaK11BI GGWCC 2 cut(s) 79, 503
XapI RAATTY 2 cut(s) 86, 583
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 3 cut(s) 228, 276, 554
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.