Rorug05G0029900

structural constituent of ribosome

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018253
Physical Location & Seq
Reverse (-)
1899660 .. 1902385
2726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0029900.1

Sequence Viewer

Length: 867 bp
ATGGAGAAGTGGGTGTCAATGCCAAAGGTGGAGCTTCATGCTCATCTCAATGGATCTATTAGAGACTCTACTTTACTAGAACTTGCAAGAGATTTGGGTGAGAAGGGTGTCATAGTTTTCTCTGATTTTGAGCATGTTATACAGAAAGATGACCGTTCTTTAACCGAAGTGTTCAAGTTGTTTGACCTGATCCATATTGTTACTACTGACCACCAAATTATCACAAGAATCACCAAAGAAGTTATTGAAGATTTTGCTGCTGAGAATGTTGTGTATCTGGAGCTCAGAACAACTCCAAAGAAAAATGATTCCATAGGAATGAGCAAACGCTCTTACTTGGAAGCAGTACTGGAGGGTATAAAGGCTGTGAGTACAGTTGATGTTGATTTTAGGCCTCATGATGCTGTTGCCAGGATTCCCAAGAATTCTCCACCTATATATGATACATGTAATGGAAGTACAAGAAAAAAGATTTACGTGAGACTTCTTTTGAGCATTGATCGTCGGGGAACCACAGAGGCTGCAATGGAAACTGTGAATCTTGCACTGGAAATGAGAGATTTAGGGGTGGTTGGTATCGATCTTTCTGGGAATCCGATTGTGGGAGATTGGAGTACATATTTGCCAGCATTAAAATTTGCTAGAGAGCAGGGTCTTTATATAACCCTGCATTGCGGAGAGGTGCCTAATCCAAAGGAGGTACGATCAATGCTAGATTTTCTACCGCAGAGGATTGGCCATGCCTGTTGCTTTGAAGAAGCAGAATGGGAAAAGTTAAAATCTTCAAGTATTCCGGTTGAGATTTGTTTGACATCCAACATCAGGACCAATACAATTCCTTCACTCGAAATTCATCATTTTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000184 GO:0000956 GO:0002181 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0003824 GO:0004518 GO:0004519 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009892 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015934 GO:0016020 GO:0016070 GO:0016071 GO:0016072 GO:0016787 GO:0016788 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022414 GO:0022613 GO:0022625 GO:0022626 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034470 GO:0034613 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042273 GO:0042886 GO:0043021 GO:0043043 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0044877 GO:0045047 GO:0045184 GO:0046483 GO:0046700 GO:0046872 GO:0046907 GO:0046914 GO:0048316 GO:0048519 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 ko03010 map00230 map01100 map01110 map01130 map03010
Pfam Domains
Protein Families
Ribosomal_L35Ae

Protein Analysis

288

Amino Acids

32.48

Weight (kDa)

5.72

Isoelectric Point (pI)

31.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
A_deaminase PF00962 8 - 284 1.5e-34 Adenosine deaminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018253)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032228
rosa_multiflora Rmu_sc0000012.1_g000010 Rmu_sc0000012.1_g000011
rosa_roxburghii Rroxscaffold_1G00060710
rosa_rugosa Rorug05G0029900 Rorug05G0029900
rosa_samantha Rh5AG123500 Rh5BG122400 Rh5CG133800 Rh5DG121800
rosa_wichuraiana Rw5G010660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 682
AciI CCGC 2 cut(s) 675, 725
AclWI GGATC 2 cut(s) 61, 184
AcoI YGGCCR 1 cut(s) 736
AcsI RAATTY 3 cut(s) 424, 635, 849
AfaI GTAC 5 cut(s) 348, 373, 460, 616, 702
AfiI CCNNNNNNNGG 2 cut(s) 602, 822
AflIII ACRYGT 1 cut(s) 446
AgsI TTSAA 4 cut(s) 175, 248, 755, 786
AjnI CCWGG 1 cut(s) 410
AluBI AGCT 2 cut(s) 34, 283
AluI AGCT 2 cut(s) 34, 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 57, 475
AlwI GGATC 2 cut(s) 61, 184
AlwNI CAGNNNCTG 1 cut(s) 521
AoxI GGCC 2 cut(s) 392, 736
ApeKI GCWGC 2 cut(s) 257, 521
ApoI RAATTY 3 cut(s) 424, 635, 849
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 110, 223
AvaII GGWCC 1 cut(s) 825
BalI TGGCCA 1 cut(s) 738
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 2 cut(s) 244, 508
BciT130I CCWGG 1 cut(s) 412
BcoDI GTCTC 2 cut(s) 57, 475
BfaI CTAG 3 cut(s) 77, 642, 713
BisI GCNGC 2 cut(s) 258, 522
BlsI GCNGC 2 cut(s) 259, 523
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 1 cut(s) 412
Bme18I GGWCC 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 2 cut(s) 511, 684
BmrFI CCNGG 1 cut(s) 412
BmsI GCATC 1 cut(s) 391
BpmI CTGGAG 2 cut(s) 299, 371
Bsa29I ATCGAT 1 cut(s) 579
BsaAI YACGTR 1 cut(s) 478
BsaWI WCCGGW 1 cut(s) 793
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 822
Bse1I ACTGG 2 cut(s) 354, 552
Bse3DI GCAATG 2 cut(s) 531, 670
BseBI CCWGG 1 cut(s) 412
BseCI ATCGAT 1 cut(s) 579
BseGI GGATG 1 cut(s) 812
BseLI CCNNNNNNNGG 2 cut(s) 602, 822
BseMI GCAATG 2 cut(s) 531, 670
BseMII CTCAG 2 cut(s) 252, 298
BseNI ACTGG 2 cut(s) 354, 552
BseXI GCAGC 2 cut(s) 244, 508
BshFI GGCC 2 cut(s) 394, 738
BshNI GGYRCC 1 cut(s) 682
BshVI ATCGAT 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 794
BslI CCNNNNNNNGG 2 cut(s) 602, 822
BsmAI GTCTC 2 cut(s) 57, 475
BsnI GGCC 2 cut(s) 394, 738
Bsp1286I GDGCHC 1 cut(s) 285
Bsp143I GATC 5 cut(s) 53, 189, 499, 580, 704
BspACI CCGC 2 cut(s) 675, 725
BspANI GGCC 2 cut(s) 394, 738
BspCNI CTCAG 2 cut(s) 253, 297
BspDI ATCGAT 1 cut(s) 579
BspHI TCATGA 1 cut(s) 397
BspLI GGNNCC 2 cut(s) 511, 684
BspPI GGATC 2 cut(s) 61, 184
BspT107I GGYRCC 1 cut(s) 682
BsrDI GCAATG 2 cut(s) 531, 670
BsrI ACTGG 2 cut(s) 354, 552
BssMI GATC 5 cut(s) 53, 189, 499, 580, 704
Bst2UI CCWGG 1 cut(s) 412
Bst4CI ACNGT 3 cut(s) 155, 376, 535
BstBAI YACGTR 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 627
BstDEI CTNAG 2 cut(s) 261, 284
BstF5I GGATG 1 cut(s) 812
BstKTI GATC 5 cut(s) 56, 192, 502, 583, 707
BstMAI GTCTC 2 cut(s) 57, 475
BstMBI GATC 5 cut(s) 53, 189, 499, 580, 704
BstNI CCWGG 1 cut(s) 412
BstNSI RCATGY 2 cut(s) 137, 450
BstSCI CCNGG 1 cut(s) 410
BstV1I GCAGC 2 cut(s) 244, 508
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 579
BsuRI GGCC 2 cut(s) 394, 738
BsuTUI ATCGAT 1 cut(s) 579
BtsCI GGATG 1 cut(s) 812
BtsIMutI CAGTG 1 cut(s) 545
Cac8I GCNNGC 1 cut(s) 627
CaiI CAGNNNCTG 1 cut(s) 521
CciI TCATGA 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 825
ClaI ATCGAT 1 cut(s) 579
Csp6I GTAC 5 cut(s) 347, 372, 459, 615, 701
CviAII CATG 5 cut(s) 38, 134, 398, 447, 740
CviJI RGCY 6 cut(s) 34, 283, 365, 394, 521, 738
CviKI_1 RGCY 6 cut(s) 34, 283, 365, 394, 521, 738
CviQI GTAC 5 cut(s) 347, 372, 459, 615, 701
DdeI CTNAG 2 cut(s) 261, 284
DpnI GATC 5 cut(s) 55, 191, 501, 582, 706
DpnII GATC 5 cut(s) 53, 189, 499, 580, 704
EaeI YGGCCR 1 cut(s) 736
Ecl136II GAGCTC 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 394
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 1 cut(s) 825
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoRI GAATTC 1 cut(s) 424
EcoRII CCWGG 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 5 cut(s) 41, 137, 401, 450, 743
FatI CATG 5 cut(s) 37, 133, 397, 446, 739
Fnu4HI GCNGC 2 cut(s) 258, 522
FokI GGATG 1 cut(s) 799
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 2 cut(s) 258, 522
FspBI CTAG 3 cut(s) 77, 642, 713
GluI GCNGC 2 cut(s) 258, 522
GsuI CTGGAG 2 cut(s) 299, 371
HaeIII GGCC 2 cut(s) 394, 738
HapII CCGG 1 cut(s) 794
Hin1II CATG 5 cut(s) 41, 137, 401, 450, 743
HinfI GANTC 6 cut(s) 65, 228, 308, 415, 538, 592
HpaII CCGG 1 cut(s) 794
HphI GGTGA 2 cut(s) 110, 223
Hpy188I TCNGA 3 cut(s) 124, 287, 597
Hpy188III TCNNGA 3 cut(s) 278, 398, 823
Hpy99I CGWCG 1 cut(s) 507
HpyAV CCTTC 2 cut(s) 97, 849
HpyCH4III ACNGT 3 cut(s) 155, 376, 535
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 4 cut(s) 86, 524, 545, 670
HpyF3I CTNAG 2 cut(s) 261, 284
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 5 cut(s) 41, 137, 401, 450, 743
Kzo9I GATC 5 cut(s) 53, 189, 499, 580, 704
LmnI GCTCC 2 cut(s) 31, 280
Lsp1109I GCAGC 2 cut(s) 244, 508
LweI GCATC 1 cut(s) 391
MaeI CTAG 3 cut(s) 77, 642, 713
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 199
MalI GATC 5 cut(s) 55, 191, 501, 582, 706
MboI GATC 5 cut(s) 53, 189, 499, 580, 704
MboII GAAGA 3 cut(s) 260, 767, 774
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 738
MluCI AATT 5 cut(s) 216, 424, 635, 834, 849
MluNI TGGCCA 1 cut(s) 738
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 840
MnlI CCTC 6 cut(s) 346, 405, 511, 673, 691, 723
Mox20I TGGCCA 1 cut(s) 738
MscI TGGCCA 1 cut(s) 738
MseI TTAA 3 cut(s) 161, 632, 776
MslI CAYNNNNRTG 2 cut(s) 48, 317
Msp20I TGGCCA 1 cut(s) 738
MspI CCGG 1 cut(s) 794
MspR9I CCNGG 1 cut(s) 412
MvaI CCWGG 1 cut(s) 412
NdeII GATC 5 cut(s) 53, 189, 499, 580, 704
NlaIII CATG 5 cut(s) 41, 137, 401, 450, 743
NlaIV GGNNCC 2 cut(s) 511, 684
NspI RCATGY 2 cut(s) 137, 450
PagI TCATGA 1 cut(s) 397
PceI AGGCCT 1 cut(s) 394
PciI ACATGT 1 cut(s) 446
PfeI GAWTC 5 cut(s) 228, 308, 415, 538, 592
PkrI GCNGC 2 cut(s) 259, 523
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
Ppu21I YACGTR 1 cut(s) 478
PscI ACATGT 1 cut(s) 446
Psp124BI GAGCTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 410
PspGI CCWGG 1 cut(s) 410
PspN4I GGNNCC 2 cut(s) 511, 684
PspPI GGNCC 1 cut(s) 825
PstNI CAGNNNCTG 1 cut(s) 521
PsuI RGATCY 1 cut(s) 53
RsaI GTAC 5 cut(s) 348, 373, 460, 616, 702
RsaNI GTAC 5 cut(s) 347, 372, 459, 615, 701
RseI CAYNNNNRTG 2 cut(s) 48, 317
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 161, 632, 776
SatI GCNGC 2 cut(s) 258, 522
Sau3AI GATC 5 cut(s) 53, 189, 499, 580, 704
Sau96I GGNCC 1 cut(s) 825
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 412
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 30, 36, 189, 285, 436, 480, 684, 702
SfaNI GCATC 1 cut(s) 391
SinI GGWCC 1 cut(s) 825
SmiMI CAYNNNNRTG 2 cut(s) 48, 317
Sse9I AATT 5 cut(s) 216, 424, 635, 834, 849
SseBI AGGCCT 1 cut(s) 394
SsiI CCGC 2 cut(s) 675, 725
SspMI CTAG 3 cut(s) 77, 642, 713
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 394
StyD4I CCNGG 1 cut(s) 410
TaaI ACNGT 3 cut(s) 155, 376, 535
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 579, 846
TasI AATT 5 cut(s) 216, 424, 635, 834, 849
TatI WGTACW 4 cut(s) 346, 371, 458, 614
TfiI GAWTC 5 cut(s) 228, 308, 415, 538, 592
Tru1I TTAA 3 cut(s) 161, 632, 776
Tru9I TTAA 3 cut(s) 161, 632, 776
TscAI CASTG 1 cut(s) 552
TseI GCWGC 2 cut(s) 257, 521
TspDTI ATGAA 2 cut(s) 26, 842
TspRI CASTG 1 cut(s) 552
VpaK11BI GGWCC 1 cut(s) 825
XapI RAATTY 3 cut(s) 424, 635, 849
XceI RCATGY 2 cut(s) 137, 450
XspI CTAG 3 cut(s) 77, 642, 713
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.