Rmu_sc0000012.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000012.1
OG0018253
Physical Location & Seq
Forward (+)
58252 .. 59922
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000012.1_g000011.1.cds

Sequence Viewer

Length: 1188 bp
atggaagatggtactggtatagaggattcaaattctggtataggtgtggcatatgagatgattcttcccctattcaaaatagttgatcaagaaatgaagaaggaaataaatattgacattgatgtcacaaatagtacaagcagctggtatgaatcagaacaagaaattaataaagttcttgatcaatttgtacttgtactttcaacgttggacacacttttgagctgtccaatgctggaagagcgaatgttgcaattgctgggaaatggacttacaaggttggagacaagagtgaacaagtttgaaagtatggtgaatgaaataaagggaaaattcagcattaacagtacgggtttgatggcaatggatgcatttcttgtggaacataacacagaacagagatggctggatttgatcaaattggagggccattcaggagagaggcctgaaaaaagacagatggcaggtgatatctctgaagaaggaactttcagagatgcagagcagcgcttgaagatatgtcgagcaacatttgaggatcaggtcaaggtggtcctgaaattcaaggattttaaggaacctaaccgcatagccgtagactttggcaagttctatgttgctagagtgacttctatacacttttatagaaagtctgatcctgcagcacctgggaggcaggagttcctttctgagataagaaatcctgaatggcctttttctgtttctaggccttactttgaaagagttacagcaactcaaggatataatgccactagaaatagaaagagtgtaaggcaattgcttgaagagcaccagcctgtgcccggaacaaaattggagagtctaaaggcgtatgcagttcatcttgggactcaaatctctaaacatcttgtcaagctcatactgatgctgaagtcagaaggaataccagaaatggtcctactgctgttgttcggcatagcttctcccaacttatttagcctggagaaaacccactttttaccggtggagaacgatctgaatggcgtgcatgatatagagggtgtggatgatgtggtgggtatggaagaggtggtggaagggatggaggaattatacaatgatcagaaggatactcctactttagtgaggcaagttctggagaaaatgaaagggcccatagaacaagtgtgggagggtttgacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

395

Amino Acids

45.06

Weight (kDa)

5.04

Isoelectric Point (pI)

37.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018253)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032228
rosa_multiflora Rmu_sc0000012.1_g000010 Rmu_sc0000012.1_g000011
rosa_roxburghii Rroxscaffold_1G00060710
rosa_rugosa Rorug05G0029900 Rorug05G0029900
rosa_samantha Rh5AG123500 Rh5BG122400 Rh5CG133800 Rh5DG121800
rosa_wichuraiana Rw5G010660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 455
AasI GACNNNNNNGTC 1 cut(s) 122
Acc36I ACCTGC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 597
AciI CCGC 1 cut(s) 586
AclI AACGTT 1 cut(s) 206
AclWI GGATC 2 cut(s) 546, 650
AcsI RAATTY 3 cut(s) 31, 332, 560
AcuI CTGAAG 2 cut(s) 498, 932
AfaI GTAC 5 cut(s) 13, 136, 192, 198, 349
AfeI AGCGCT 1 cut(s) 509
AfiI CCNNNNNNNGG 1 cut(s) 824
AgeI ACCGGT 1 cut(s) 1003
AgsI TTSAA 8 cut(s) 30, 76, 204, 305, 514, 565, 740, 806
AjnI CCWGG 2 cut(s) 667, 981
AluBI AGCT 4 cut(s) 144, 225, 898, 962
AluI AGCT 4 cut(s) 144, 225, 898, 962
Alw21I GWGCWC 1 cut(s) 813
Alw26I GTCTC 1 cut(s) 278
AlwI GGATC 2 cut(s) 546, 650
AlwNI CAGNNNCTG 1 cut(s) 668
Aor51HI AGCGCT 1 cut(s) 509
AoxI GGCC 5 cut(s) 427, 443, 710, 728, 1154
ApaI GGGCCC 1 cut(s) 1158
ApeKI GCWGC 3 cut(s) 141, 505, 662
ApoI RAATTY 3 cut(s) 31, 332, 560
AseI ATTAAT 1 cut(s) 168
AsiGI ACCGGT 1 cut(s) 1003
AspLEI GCGC 1 cut(s) 510
AspS9I GGNCC 5 cut(s) 427, 553, 937, 1154, 1155
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 325, 479
AvaII GGWCC 2 cut(s) 553, 937
BaeGI GKGCMC 2 cut(s) 825, 1158
BanII GRGCYC 1 cut(s) 1158
Bbv12I GWGCWC 1 cut(s) 813
BbvI GCAGC 3 cut(s) 153, 517, 674
BccI CCATC 5 cut(s) 2, 352, 396, 454, 1078
BceAI ACGGC 1 cut(s) 578
BciT130I CCWGG 2 cut(s) 669, 983
BciVI GTATCC 1 cut(s) 1105
BclI TGATCA 4 cut(s) 85, 181, 414, 1102
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 1 cut(s) 278
BfaI CTAG 3 cut(s) 621, 726, 774
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 1 cut(s) 511
BfuAI ACCTGC 1 cut(s) 455
BfuI GTATCC 1 cut(s) 1105
BisI GCNGC 3 cut(s) 142, 506, 663
BlsI GCNGC 3 cut(s) 143, 507, 664
Bme1390I CCNGG 3 cut(s) 669, 825, 983
Bme18I GGWCC 2 cut(s) 553, 937
BmgT120I GGNCC 5 cut(s) 427, 553, 937, 1154, 1155
BmiI GGNNCC 2 cut(s) 579, 1156
BmrFI CCNGG 3 cut(s) 669, 825, 983
BmsI GCATC 3 cut(s) 358, 487, 897
BpmI CTGGAG 2 cut(s) 1004, 1160
BpuEI CTTGAG 1 cut(s) 741
BpuMI CCSGG 1 cut(s) 825
BsaJI CCNNGG 1 cut(s) 668
BsaWI WCCGGW 1 cut(s) 1003
Bsc4I CCNNNNNNNGG 1 cut(s) 824
Bse118I RCCGGY 1 cut(s) 1003
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 369
BseBI CCWGG 2 cut(s) 669, 983
BseDI CCNNGG 1 cut(s) 668
BseGI GGATG 3 cut(s) 373, 1054, 1089
BseLI CCNNNNNNNGG 1 cut(s) 824
BseMI GCAATG 1 cut(s) 369
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 2 cut(s) 825, 1158
BseXI GCAGC 3 cut(s) 153, 517, 674
BseYI CCCAGC 1 cut(s) 259
BshFI GGCC 5 cut(s) 429, 445, 712, 730, 1156
BshTI ACCGGT 1 cut(s) 1003
BsiHKAI GWGCWC 1 cut(s) 813
BsiSI CCGG 2 cut(s) 825, 1004
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 1 cut(s) 824
BsmAI GTCTC 1 cut(s) 278
BsmFI GGGAC 1 cut(s) 883
BsnI GGCC 5 cut(s) 429, 445, 712, 730, 1156
Bsp120I GGGCCC 1 cut(s) 1154
Bsp1286I GDGCHC 3 cut(s) 813, 825, 1158
Bsp143I GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
BspACI CCGC 1 cut(s) 586
BspANI GGCC 5 cut(s) 429, 445, 712, 730, 1156
BspCNI CTCAG 1 cut(s) 682
BspLI GGNNCC 2 cut(s) 579, 1156
BspMAI CTGCAG 1 cut(s) 664
BspMI ACCTGC 1 cut(s) 455
BspPI GGATC 2 cut(s) 546, 650
BspQI GCTCTTC 2 cut(s) 234, 801
BsrDI GCAATG 1 cut(s) 369
BsrFI RCCGGY 1 cut(s) 1003
BsrI ACTGG 1 cut(s) 19
BssAI RCCGGY 1 cut(s) 1003
BssECI CCNNGG 1 cut(s) 668
BssMI GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
Bst2UI CCWGG 2 cut(s) 669, 983
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 3 cut(s) 234, 801, 1062
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 1028
BstDEI CTNAG 1 cut(s) 690
BstF5I GGATG 3 cut(s) 373, 1054, 1089
BstH2I RGCGCY 1 cut(s) 511
BstHHI GCGC 1 cut(s) 510
BstKTI GATC 7 cut(s) 88, 184, 417, 541, 658, 1018, 1105
BstMAI GTCTC 1 cut(s) 278
BstMBI GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
BstMWI GCNNNNNNNGC 4 cut(s) 241, 250, 368, 808
BstNI CCWGG 2 cut(s) 669, 983
BstSCI CCNGG 3 cut(s) 667, 823, 981
BstSFI CTRYAG 1 cut(s) 660
BstSLI GKGCMC 2 cut(s) 825, 1158
BstV1I GCAGC 3 cut(s) 153, 517, 674
BsuI GTATCC 1 cut(s) 1105
BsuRI GGCC 5 cut(s) 429, 445, 712, 730, 1156
BtsCI GGATG 3 cut(s) 373, 1054, 1089
BveI ACCTGC 1 cut(s) 455
Cac8I GCNNGC 1 cut(s) 1028
CaiI CAGNNNCTG 1 cut(s) 668
CfoI GCGC 1 cut(s) 510
Cfr10I RCCGGY 1 cut(s) 1003
Cfr13I GGNCC 5 cut(s) 427, 553, 937, 1154, 1155
Csp6I GTAC 5 cut(s) 12, 135, 191, 197, 348
CspAI ACCGGT 1 cut(s) 1003
CviAII CATG 2 cut(s) 1031, 1185
CviQI GTAC 5 cut(s) 12, 135, 191, 197, 348
DdeI CTNAG 1 cut(s) 690
DpnI GATC 7 cut(s) 87, 183, 416, 540, 657, 1017, 1104
DpnII GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 3 cut(s) 234, 801, 1062
EarI CTCTTC 3 cut(s) 234, 801, 1062
Eco147I AGGCCT 2 cut(s) 445, 730
Eco24I GRGCYC 1 cut(s) 1158
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 553, 937
Eco47III AGCGCT 1 cut(s) 509
Eco57I CTGAAG 2 cut(s) 498, 932
EcoO109I RGGNCCY 1 cut(s) 1154
EcoRII CCWGG 2 cut(s) 667, 981
EcoRV GATATC 1 cut(s) 472
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 1158
FaeI CATG 2 cut(s) 1034, 1188
FaqI GGGAC 1 cut(s) 883
FatI CATG 2 cut(s) 1030, 1184
FauNDI CATATG 1 cut(s) 52
FbaI TGATCA 4 cut(s) 85, 181, 414, 1102
FblI GTMKAC 1 cut(s) 597
Fnu4HI GCNGC 3 cut(s) 142, 506, 663
FokI GGATG 3 cut(s) 380, 1061, 1096
FriOI GRGCYC 1 cut(s) 1158
Fsp4HI GCNGC 3 cut(s) 142, 506, 663
FspBI CTAG 3 cut(s) 621, 726, 774
GlaI GCGC 1 cut(s) 509
GluI GCNGC 3 cut(s) 142, 506, 663
GsaI CCCAGC 1 cut(s) 263
GsuI CTGGAG 2 cut(s) 1004, 1160
HaeII RGCGCY 1 cut(s) 511
HaeIII GGCC 5 cut(s) 429, 445, 712, 730, 1156
HapII CCGG 2 cut(s) 825, 1004
HhaI GCGC 1 cut(s) 510
Hin1II CATG 2 cut(s) 1034, 1188
Hin6I GCGC 1 cut(s) 508
HinP1I GCGC 1 cut(s) 508
HinfI GANTC 5 cut(s) 26, 61, 152, 841, 871
HpaII CCGG 2 cut(s) 825, 1004
HphI GGTGA 2 cut(s) 325, 479
Hpy166II GTNNAC 2 cut(s) 295, 598
Hpy188I TCNGA 8 cut(s) 157, 478, 494, 655, 691, 919, 1020, 1107
Hpy188III TCNNGA 6 cut(s) 89, 179, 435, 556, 704, 1139
Hpy8I GTNNAC 2 cut(s) 295, 598
HpyAV CCTTC 5 cut(s) 94, 476, 914, 1073, 1102
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 6 cut(s) 253, 371, 500, 662, 857, 1030
HpyF10VI GCNNNNNNNGC 4 cut(s) 241, 250, 368, 808
HpyF3I CTNAG 1 cut(s) 690
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 2 cut(s) 1034, 1188
HspAI GCGC 1 cut(s) 508
Ksp22I TGATCA 4 cut(s) 85, 181, 414, 1102
Kzo9I GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
LguI GCTCTTC 2 cut(s) 234, 801
Lsp1109I GCAGC 3 cut(s) 153, 517, 674
LweI GCATC 3 cut(s) 358, 487, 897
MaeI CTAG 3 cut(s) 621, 726, 774
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 3 cut(s) 124, 625, 745
MalI GATC 7 cut(s) 87, 183, 416, 540, 657, 1017, 1104
MboI GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
MboII GAAGA 8 cut(s) 17, 56, 109, 251, 491, 526, 818, 1079
MfeI CAATTG 2 cut(s) 254, 797
MhlI GDGCHC 3 cut(s) 813, 825, 1158
MlyI GAGTC 2 cut(s) 850, 865
MmeI TCCRAC 2 cut(s) 189, 261
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 3 cut(s) 168, 342, 573
MslI CAYNNNNRTG 1 cut(s) 905
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 825, 1004
MspR9I CCNGG 3 cut(s) 669, 825, 983
MunI CAATTG 2 cut(s) 254, 797
MvaI CCWGG 2 cut(s) 669, 983
MwoI GCNNNNNNNGC 4 cut(s) 241, 250, 368, 808
NciI CCSGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 52
NdeII GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
NlaIII CATG 2 cut(s) 1034, 1188
NlaIV GGNNCC 2 cut(s) 579, 1156
NmuCI GTSAC 2 cut(s) 124, 625
NsiI ATGCAT 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 455
PceI AGGCCT 2 cut(s) 445, 730
PciSI GCTCTTC 2 cut(s) 234, 801
PfeI GAWTC 3 cut(s) 26, 61, 152
PinAI ACCGGT 1 cut(s) 1003
PkrI GCNGC 3 cut(s) 143, 507, 664
PleI GAGTC 2 cut(s) 849, 865
PpsI GAGTC 2 cut(s) 849, 865
PshBI ATTAAT 1 cut(s) 168
Psp1406I AACGTT 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 667, 981
PspFI CCCAGC 1 cut(s) 259
PspGI CCWGG 2 cut(s) 667, 981
PspN4I GGNNCC 2 cut(s) 579, 1156
PspOMI GGGCCC 1 cut(s) 1154
PspPI GGNCC 5 cut(s) 427, 553, 937, 1154, 1155
PstI CTGCAG 1 cut(s) 664
PstNI CAGNNNCTG 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 144
RsaI GTAC 5 cut(s) 13, 136, 192, 198, 349
RsaNI GTAC 5 cut(s) 12, 135, 191, 197, 348
RseI CAYNNNNRTG 1 cut(s) 905
SapI GCTCTTC 2 cut(s) 234, 801
SaqAI TTAA 3 cut(s) 168, 342, 573
SatI GCNGC 3 cut(s) 142, 506, 663
Sau3AI GATC 7 cut(s) 85, 181, 414, 538, 655, 1015, 1102
Sau96I GGNCC 5 cut(s) 427, 553, 937, 1154, 1155
SchI GAGTC 2 cut(s) 850, 865
ScrFI CCNGG 3 cut(s) 669, 825, 983
SduI GDGCHC 3 cut(s) 813, 825, 1158
SfaNI GCATC 3 cut(s) 358, 487, 897
SfcI CTRYAG 1 cut(s) 660
SinI GGWCC 2 cut(s) 553, 937
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 756
SmoI CTYRAG 1 cut(s) 756
SseBI AGGCCT 2 cut(s) 445, 730
SsiI CCGC 1 cut(s) 586
SspI AATATT 1 cut(s) 112
SspMI CTAG 3 cut(s) 621, 726, 774
StuI AGGCCT 2 cut(s) 445, 730
StyD4I CCNGG 3 cut(s) 667, 823, 981
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 523
TatI WGTACW 3 cut(s) 134, 190, 196
TfiI GAWTC 3 cut(s) 26, 61, 152
Tru1I TTAA 3 cut(s) 168, 342, 573
Tru9I TTAA 3 cut(s) 168, 342, 573
TseFI GTSAC 2 cut(s) 124, 625
TseI GCWGC 3 cut(s) 141, 505, 662
Tsp45I GTSAC 2 cut(s) 124, 625
TspDTI ATGAA 5 cut(s) 110, 165, 333, 851, 1163
VpaK11BI GGWCC 2 cut(s) 553, 937
VspI ATTAAT 1 cut(s) 168
XapI RAATTY 3 cut(s) 31, 332, 560
XmiI GTMKAC 1 cut(s) 597
XspI CTAG 3 cut(s) 621, 726, 774
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.