structural constituent of ribosome
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000032228 |
| rosa_multiflora | Rmu_sc0000012.1_g000010 Rmu_sc0000012.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00060710 |
| rosa_rugosa | Rorug05G0029900 Rorug05G0029900 |
| rosa_samantha | Rh5AG123500 Rh5BG122400 Rh5CG133800 Rh5DG121800 |
| rosa_wichuraiana | Rw5G010660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 398 |
| AciI | CCGC | 1 cut(s) | 862 |
| AclI | AACGTT | 1 cut(s) | 482 |
| AclWI | GGATC | 3 cut(s) | 101, 822, 926 |
| AcsI | RAATTY | 5 cut(s) | 236, 307, 608, 836, 1357 |
| AcuI | CTGAAG | 3 cut(s) | 774, 1208, 1364 |
| AfaI | GTAC | 6 cut(s) | 289, 412, 468, 474, 625, 912 |
| AfeI | AGCGCT | 1 cut(s) | 785 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1100 |
| AgeI | ACCGGT | 1 cut(s) | 1552 |
| AjnI | CCWGG | 2 cut(s) | 943, 1530 |
| AluBI | AGCT | 9 cut(s) | 81, 253, 275, 420, 501, 1087, 1174, 1485, 1511 |
| AluI | AGCT | 9 cut(s) | 81, 253, 275, 420, 501, 1087, 1174, 1485, 1511 |
| Alw21I | GWGCWC | 1 cut(s) | 1089 |
| Alw26I | GTCTC | 2 cut(s) | 554, 1242 |
| AlwI | GGATC | 3 cut(s) | 101, 822, 926 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 944, 1280 |
| Aor51HI | AGCGCT | 1 cut(s) | 785 |
| AoxI | GGCC | 4 cut(s) | 703, 986, 1004, 1703 |
| ApaI | GGGCCC | 1 cut(s) | 1707 |
| ApeKI | GCWGC | 5 cut(s) | 272, 417, 781, 803, 938 |
| ApoI | RAATTY | 5 cut(s) | 236, 307, 608, 836, 1357 |
| AseI | ATTAAT | 1 cut(s) | 444 |
| AsiGI | ACCGGT | 1 cut(s) | 1552 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1212 |
| AspLEI | GCGC | 1 cut(s) | 786 |
| AspS9I | GGNCC | 4 cut(s) | 703, 1277, 1703, 1704 |
| AsuC2I | CCSGG | 1 cut(s) | 1101 |
| AsuHPI | GGTGA | 2 cut(s) | 601, 755 |
| AvaII | GGWCC | 1 cut(s) | 1277 |
| BaeGI | GKGCMC | 2 cut(s) | 1101, 1707 |
| BanII | GRGCYC | 2 cut(s) | 1089, 1707 |
| BbsI | GAAGAC | 1 cut(s) | 1352 |
| Bbv12I | GWGCWC | 1 cut(s) | 1089 |
| BbvI | GCAGC | 5 cut(s) | 284, 429, 793, 815, 950 |
| BccI | CCATC | 4 cut(s) | 278, 628, 672, 1627 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1430, 1464 |
| BciT130I | CCWGG | 2 cut(s) | 945, 1532 |
| BciVI | GTATCC | 1 cut(s) | 1654 |
| BclI | TGATCA | 5 cut(s) | 361, 457, 690, 1381, 1651 |
| BcnI | CCSGG | 1 cut(s) | 1101 |
| BcoDI | GTCTC | 2 cut(s) | 554, 1242 |
| BfaI | CTAG | 4 cut(s) | 897, 1002, 1050, 1328 |
| BfmI | CTRYAG | 1 cut(s) | 936 |
| BfoI | RGCGCY | 1 cut(s) | 787 |
| BfuI | GTATCC | 1 cut(s) | 1654 |
| BisI | GCNGC | 5 cut(s) | 273, 418, 782, 804, 939 |
| BlsI | GCNGC | 5 cut(s) | 274, 419, 783, 805, 940 |
| Bme1390I | CCNGG | 3 cut(s) | 945, 1101, 1532 |
| Bme18I | GGWCC | 1 cut(s) | 1277 |
| BmgT120I | GGNCC | 4 cut(s) | 703, 1277, 1703, 1704 |
| BmiI | GGNNCC | 2 cut(s) | 855, 1705 |
| BmrFI | CCNGG | 3 cut(s) | 945, 1101, 1532 |
| BmsI | GCATC | 4 cut(s) | 634, 763, 1173, 1408 |
| BpiI | GAAGAC | 1 cut(s) | 1352 |
| BpmI | CTGGAG | 4 cut(s) | 1073, 1277, 1553, 1709 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1273 |
| BpuMI | CCSGG | 1 cut(s) | 1101 |
| Bsa29I | ATCGAT | 1 cut(s) | 1428 |
| BsaJI | CCNNGG | 2 cut(s) | 944, 1366 |
| BsaWI | WCCGGW | 1 cut(s) | 1552 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1226, 1256 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1100 |
| Bse118I | RCCGGY | 1 cut(s) | 1552 |
| Bse1I | ACTGG | 3 cut(s) | 18, 295, 1260 |
| Bse3DI | GCAATG | 3 cut(s) | 645, 1035, 1374 |
| BseBI | CCWGG | 2 cut(s) | 945, 1532 |
| BseCI | ATCGAT | 1 cut(s) | 1428 |
| BseDI | CCNNGG | 2 cut(s) | 944, 1366 |
| BseGI | GGATG | 3 cut(s) | 649, 1603, 1638 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1100 |
| BseMI | GCAATG | 3 cut(s) | 645, 1035, 1374 |
| BseMII | CTCAG | 4 cut(s) | 222, 957, 1287, 1472 |
| BseNI | ACTGG | 3 cut(s) | 18, 295, 1260 |
| BseSI | GKGCMC | 2 cut(s) | 1101, 1707 |
| BseXI | GCAGC | 5 cut(s) | 284, 429, 793, 815, 950 |
| BseYI | CCCAGC | 2 cut(s) | 535, 1283 |
| BshFI | GGCC | 4 cut(s) | 705, 988, 1006, 1705 |
| BshTI | ACCGGT | 1 cut(s) | 1552 |
| BshVI | ATCGAT | 1 cut(s) | 1428 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1089 |
| BsiSI | CCGG | 2 cut(s) | 1101, 1553 |
| BslFI | GGGAC | 1 cut(s) | 1159 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1100 |
| BsmAI | GTCTC | 2 cut(s) | 554, 1242 |
| BsmFI | GGGAC | 1 cut(s) | 1159 |
| BsnI | GGCC | 4 cut(s) | 705, 988, 1006, 1705 |
| Bsp120I | GGGCCC | 1 cut(s) | 1703 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1089, 1101, 1707 |
| Bsp1407I | TGTACA | 1 cut(s) | 910 |
| BspACI | CCGC | 1 cut(s) | 862 |
| BspANI | GGCC | 4 cut(s) | 705, 988, 1006, 1705 |
| BspCNI | CTCAG | 4 cut(s) | 223, 958, 1286, 1473 |
| BspDI | ATCGAT | 1 cut(s) | 1428 |
| BspLI | GGNNCC | 2 cut(s) | 855, 1705 |
| BspMAI | CTGCAG | 1 cut(s) | 940 |
| BspPI | GGATC | 3 cut(s) | 101, 822, 926 |
| BspQI | GCTCTTC | 2 cut(s) | 510, 1077 |
| BsrDI | GCAATG | 3 cut(s) | 645, 1035, 1374 |
| BsrFI | RCCGGY | 1 cut(s) | 1552 |
| BsrGI | TGTACA | 1 cut(s) | 910 |
| BsrI | ACTGG | 3 cut(s) | 18, 295, 1260 |
| BssAI | RCCGGY | 1 cut(s) | 1552 |
| BssECI | CCNNGG | 2 cut(s) | 944, 1366 |
| BssT1I | CCWWGG | 1 cut(s) | 1366 |
| Bst2UI | CCWGG | 2 cut(s) | 945, 1532 |
| Bst4CI | ACNGT | 3 cut(s) | 246, 623, 1351 |
| Bst6I | CTCTTC | 3 cut(s) | 510, 1077, 1611 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 644 |
| BstAUI | TGTACA | 1 cut(s) | 910 |
| BstC8I | GCNNGC | 2 cut(s) | 1408, 1577 |
| BstDEI | CTNAG | 5 cut(s) | 231, 871, 966, 1273, 1481 |
| BstF5I | GGATG | 3 cut(s) | 649, 1603, 1638 |
| BstH2I | RGCGCY | 1 cut(s) | 787 |
| BstHHI | GCGC | 1 cut(s) | 786 |
| BstMAI | GTCTC | 2 cut(s) | 554, 1242 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 517, 526, 644, 1084 |
| BstNI | CCWGG | 2 cut(s) | 945, 1532 |
| BstSCI | CCNGG | 3 cut(s) | 943, 1099, 1530 |
| BstSFI | CTRYAG | 1 cut(s) | 936 |
| BstSLI | GKGCMC | 2 cut(s) | 1101, 1707 |
| BstV1I | GCAGC | 5 cut(s) | 284, 429, 793, 815, 950 |
| BstV2I | GAAGAC | 1 cut(s) | 1352 |
| Bsu15I | ATCGAT | 1 cut(s) | 1428 |
| BsuI | GTATCC | 1 cut(s) | 1654 |
| BsuRI | GGCC | 4 cut(s) | 705, 988, 1006, 1705 |
| BsuTUI | ATCGAT | 1 cut(s) | 1428 |
| BtsCI | GGATG | 3 cut(s) | 649, 1603, 1638 |
| BtsI | GCAGTG | 2 cut(s) | 95, 1490 |
| BtsIMutI | CAGTG | 2 cut(s) | 95, 1490 |
| Cac8I | GCNNGC | 2 cut(s) | 1408, 1577 |
| CaiI | CAGNNNCTG | 2 cut(s) | 944, 1280 |
| CfoI | GCGC | 1 cut(s) | 786 |
| Cfr10I | RCCGGY | 1 cut(s) | 1552 |
| Cfr13I | GGNCC | 4 cut(s) | 703, 1277, 1703, 1704 |
| ClaI | ATCGAT | 1 cut(s) | 1428 |
| Csp6I | GTAC | 6 cut(s) | 288, 411, 467, 473, 624, 911 |
| CspAI | ACCGGT | 1 cut(s) | 1552 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1479, 1514 |
| CviAII | CATG | 5 cut(s) | 334, 1411, 1580, 1612, 1734 |
| CviQI | GTAC | 6 cut(s) | 288, 411, 467, 473, 624, 911 |
| DdeI | CTNAG | 5 cut(s) | 231, 871, 966, 1273, 1481 |
| DraI | TTTAAA | 1 cut(s) | 1362 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 398 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 398 |
| Eam1104I | CTCTTC | 3 cut(s) | 510, 1077, 1611 |
| EarI | CTCTTC | 3 cut(s) | 510, 1077, 1611 |
| Ecl136II | GAGCTC | 1 cut(s) | 1087 |
| Eco130I | CCWWGG | 1 cut(s) | 1366 |
| Eco147I | AGGCCT | 1 cut(s) | 1006 |
| Eco24I | GRGCYC | 2 cut(s) | 1089, 1707 |
| Eco32I | GATATC | 1 cut(s) | 748 |
| Eco47I | GGWCC | 1 cut(s) | 1277 |
| Eco47III | AGCGCT | 1 cut(s) | 785 |
| Eco53kI | GAGCTC | 1 cut(s) | 1087 |
| Eco57I | CTGAAG | 3 cut(s) | 774, 1208, 1364 |
| EcoICRI | GAGCTC | 1 cut(s) | 1087 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1277, 1703 |
| EcoRII | CCWGG | 2 cut(s) | 943, 1530 |
| EcoRV | GATATC | 1 cut(s) | 748 |
| EcoT14I | CCWWGG | 1 cut(s) | 1366 |
| EcoT22I | ATGCAT | 1 cut(s) | 649 |
| EcoT38I | GRGCYC | 2 cut(s) | 1089, 1707 |
| ErhI | CCWWGG | 1 cut(s) | 1366 |
| FaeI | CATG | 5 cut(s) | 337, 1414, 1583, 1615, 1737 |
| FaqI | GGGAC | 1 cut(s) | 1159 |
| FatI | CATG | 5 cut(s) | 333, 1410, 1579, 1611, 1733 |
| FauNDI | CATATG | 1 cut(s) | 328 |
| FbaI | TGATCA | 5 cut(s) | 361, 457, 690, 1381, 1651 |
| Fnu4HI | GCNGC | 5 cut(s) | 273, 418, 782, 804, 939 |
| FokI | GGATG | 3 cut(s) | 656, 1610, 1645 |
| FriOI | GRGCYC | 2 cut(s) | 1089, 1707 |
| Fsp4HI | GCNGC | 5 cut(s) | 273, 418, 782, 804, 939 |
| FspBI | CTAG | 4 cut(s) | 897, 1002, 1050, 1328 |
| GlaI | GCGC | 1 cut(s) | 785 |
| GluI | GCNGC | 5 cut(s) | 273, 418, 782, 804, 939 |
| GsaI | CCCAGC | 2 cut(s) | 539, 1287 |
| GsuI | CTGGAG | 4 cut(s) | 1073, 1277, 1553, 1709 |
| HaeII | RGCGCY | 1 cut(s) | 787 |
| HaeIII | GGCC | 4 cut(s) | 705, 988, 1006, 1705 |
| HapII | CCGG | 2 cut(s) | 1101, 1553 |
| HhaI | GCGC | 1 cut(s) | 786 |
| Hin1II | CATG | 5 cut(s) | 337, 1414, 1583, 1615, 1737 |
| Hin6I | GCGC | 1 cut(s) | 784 |
| HinP1I | GCGC | 1 cut(s) | 784 |
| HpaII | CCGG | 2 cut(s) | 1101, 1553 |
| HphI | GGTGA | 2 cut(s) | 601, 755 |
| Hpy166II | GTNNAC | 4 cut(s) | 571, 913, 1266, 1300 |
| Hpy8I | GTNNAC | 4 cut(s) | 571, 913, 1266, 1300 |
| HpyAV | CCTTC | 7 cut(s) | 50, 370, 752, 1017, 1190, 1622, 1651 |
| HpyCH4III | ACNGT | 3 cut(s) | 246, 623, 1351 |
| HpyCH4IV | ACGT | 1 cut(s) | 482 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 517, 526, 644, 1084 |
| HpyF3I | CTNAG | 5 cut(s) | 231, 871, 966, 1273, 1481 |
| HpySE526I | ACGT | 1 cut(s) | 482 |
| Hsp92II | CATG | 5 cut(s) | 337, 1414, 1583, 1615, 1737 |
| HspAI | GCGC | 1 cut(s) | 784 |
| Ksp22I | TGATCA | 5 cut(s) | 361, 457, 690, 1381, 1651 |
| LguI | GCTCTTC | 2 cut(s) | 510, 1077 |
| LmnI | GCTCC | 1 cut(s) | 1092 |
| Lsp1109I | GCAGC | 5 cut(s) | 284, 429, 793, 815, 950 |
| LweI | GCATC | 4 cut(s) | 634, 763, 1173, 1408 |
| MaeI | CTAG | 4 cut(s) | 897, 1002, 1050, 1328 |
| MaeII | ACGT | 1 cut(s) | 482 |
| MaeIII | GTNAC | 3 cut(s) | 901, 1021, 1390 |
| MfeI | CAATTG | 2 cut(s) | 530, 1073 |
| MhlI | GDGCHC | 3 cut(s) | 1089, 1101, 1707 |
| MlyI | GAGTC | 7 cut(s) | 136, 187, 727, 1126, 1141, 1244, 1481 |
| MmeI | TCCRAC | 2 cut(s) | 465, 537 |
| Mph1103I | ATGCAT | 1 cut(s) | 649 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1212 |
| MseI | TTAA | 6 cut(s) | 42, 62, 444, 618, 849, 1361 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1181 |
| MspA1I | CMGCKG | 2 cut(s) | 81, 420 |
| MspI | CCGG | 2 cut(s) | 1101, 1553 |
| MspR9I | CCNGG | 3 cut(s) | 945, 1101, 1532 |
| MunI | CAATTG | 2 cut(s) | 530, 1073 |
| MvaI | CCWGG | 2 cut(s) | 945, 1532 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 517, 526, 644, 1084 |
| NciI | CCSGG | 1 cut(s) | 1101 |
| NdeI | CATATG | 1 cut(s) | 328 |
| NlaIII | CATG | 5 cut(s) | 337, 1414, 1583, 1615, 1737 |
| NlaIV | GGNNCC | 2 cut(s) | 855, 1705 |
| NmuCI | GTSAC | 1 cut(s) | 901 |
| NsiI | ATGCAT | 1 cut(s) | 649 |
| PceI | AGGCCT | 1 cut(s) | 1006 |
| PciSI | GCTCTTC | 2 cut(s) | 510, 1077 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1212 |
| PfeI | GAWTC | 3 cut(s) | 302, 337, 428 |
| PinAI | ACCGGT | 1 cut(s) | 1552 |
| PkrI | GCNGC | 5 cut(s) | 274, 419, 783, 805, 940 |
| PleI | GAGTC | 7 cut(s) | 136, 186, 726, 1125, 1141, 1243, 1480 |
| PpsI | GAGTC | 7 cut(s) | 136, 186, 726, 1125, 1141, 1243, 1480 |
| PpuMI | RGGWCCY | 1 cut(s) | 1277 |
| PshBI | ATTAAT | 1 cut(s) | 444 |
| Psp124BI | GAGCTC | 1 cut(s) | 1089 |
| Psp1406I | AACGTT | 1 cut(s) | 482 |
| Psp5II | RGGWCCY | 1 cut(s) | 1277 |
| Psp6I | CCWGG | 2 cut(s) | 943, 1530 |
| PspFI | CCCAGC | 2 cut(s) | 535, 1283 |
| PspGI | CCWGG | 2 cut(s) | 943, 1530 |
| PspN4I | GGNNCC | 2 cut(s) | 855, 1705 |
| PspOMI | GGGCCC | 1 cut(s) | 1703 |
| PspPI | GGNCC | 4 cut(s) | 703, 1277, 1703, 1704 |
| PspPPI | RGGWCCY | 1 cut(s) | 1277 |
| PstI | CTGCAG | 1 cut(s) | 940 |
| PstNI | CAGNNNCTG | 2 cut(s) | 944, 1280 |
| PvuII | CAGCTG | 2 cut(s) | 81, 420 |
| RsaI | GTAC | 6 cut(s) | 289, 412, 468, 474, 625, 912 |
| RsaNI | GTAC | 6 cut(s) | 288, 411, 467, 473, 624, 911 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1181 |
| SacI | GAGCTC | 1 cut(s) | 1089 |
| SapI | GCTCTTC | 2 cut(s) | 510, 1077 |
| SaqAI | TTAA | 6 cut(s) | 42, 62, 444, 618, 849, 1361 |
| SatI | GCNGC | 5 cut(s) | 273, 418, 782, 804, 939 |
| Sau96I | GGNCC | 4 cut(s) | 703, 1277, 1703, 1704 |
| SchI | GAGTC | 7 cut(s) | 136, 187, 727, 1126, 1141, 1244, 1481 |
| ScrFI | CCNGG | 3 cut(s) | 945, 1101, 1532 |
| SduI | GDGCHC | 3 cut(s) | 1089, 1101, 1707 |
| SfaNI | GCATC | 4 cut(s) | 634, 763, 1173, 1408 |
| SfcI | CTRYAG | 1 cut(s) | 936 |
| SinI | GGWCC | 1 cut(s) | 1277 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1181 |
| SseBI | AGGCCT | 1 cut(s) | 1006 |
| SsiI | CCGC | 1 cut(s) | 862 |
| SspI | AATATT | 1 cut(s) | 388 |
| SspMI | CTAG | 4 cut(s) | 897, 1002, 1050, 1328 |
| SstI | GAGCTC | 1 cut(s) | 1089 |
| StuI | AGGCCT | 1 cut(s) | 1006 |
| StyD4I | CCNGG | 3 cut(s) | 943, 1099, 1530 |
| StyI | CCWWGG | 1 cut(s) | 1366 |
| TaaI | ACNGT | 3 cut(s) | 246, 623, 1351 |
| TaiI | ACGT | 1 cut(s) | 485 |
| TaqI | TCGA | 3 cut(s) | 799, 1428, 1440 |
| TatI | WGTACW | 4 cut(s) | 410, 466, 472, 910 |
| TfiI | GAWTC | 3 cut(s) | 302, 337, 428 |
| Tru1I | TTAA | 6 cut(s) | 42, 62, 444, 618, 849, 1361 |
| Tru9I | TTAA | 6 cut(s) | 42, 62, 444, 618, 849, 1361 |
| TscAI | CASTG | 2 cut(s) | 95, 1497 |
| TseFI | GTSAC | 1 cut(s) | 901 |
| TseI | GCWGC | 5 cut(s) | 272, 417, 781, 803, 938 |
| Tsp45I | GTSAC | 1 cut(s) | 901 |
| TspDTI | ATGAA | 7 cut(s) | 17, 129, 386, 441, 609, 1127, 1712 |
| TspGWI | ACGGA | 1 cut(s) | 857 |
| TspRI | CASTG | 2 cut(s) | 95, 1497 |
| VpaK11BI | GGWCC | 1 cut(s) | 1277 |
| VspI | ATTAAT | 1 cut(s) | 444 |
| XapI | RAATTY | 5 cut(s) | 236, 307, 608, 836, 1357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1212 |
| XspI | CTAG | 4 cut(s) | 897, 1002, 1050, 1328 |
| Zsp2I | ATGCAT | 1 cut(s) | 649 |