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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000032228 |
| rosa_multiflora | Rmu_sc0000012.1_g000010 Rmu_sc0000012.1_g000011 |
| rosa_roxburghii | Rroxscaffold_1G00060710 |
| rosa_rugosa | Rorug05G0029900 Rorug05G0029900 |
| rosa_samantha | Rh5AG123500 Rh5BG122400 Rh5CG133800 Rh5DG121800 |
| rosa_wichuraiana | Rw5G010660 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 572 |
| AciI | CCGC | 3 cut(s) | 6, 106, 1036 |
| AclI | AACGTT | 1 cut(s) | 656 |
| AclWI | GGATC | 4 cut(s) | 14, 275, 996, 1100 |
| AcoI | YGGCCR | 1 cut(s) | 3 |
| AcsI | RAATTY | 6 cut(s) | 51, 92, 410, 782, 1010, 1531 |
| AcuI | CTGAAG | 2 cut(s) | 948, 1538 |
| AfaI | GTAC | 6 cut(s) | 126, 463, 586, 642, 648, 799 |
| AfeI | AGCGCT | 1 cut(s) | 959 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1274 |
| AjnI | CCWGG | 2 cut(s) | 1117, 1704 |
| AluBI | AGCT | 5 cut(s) | 255, 594, 675, 1348, 1659 |
| AluI | AGCT | 5 cut(s) | 255, 594, 675, 1348, 1659 |
| Alw21I | GWGCWC | 1 cut(s) | 1263 |
| Alw26I | GTCTC | 3 cut(s) | 154, 728, 1416 |
| AlwI | GGATC | 4 cut(s) | 14, 275, 996, 1100 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1118, 1454 |
| Ama87I | CYCGRG | 1 cut(s) | 1316 |
| Aor51HI | AGCGCT | 1 cut(s) | 959 |
| AoxI | GGCC | 5 cut(s) | 3, 877, 1160, 1178, 1877 |
| ApaI | GGGCCC | 1 cut(s) | 1881 |
| ApeKI | GCWGC | 5 cut(s) | 446, 591, 955, 1112, 1199 |
| ApoI | RAATTY | 6 cut(s) | 51, 92, 410, 782, 1010, 1531 |
| AseI | ATTAAT | 1 cut(s) | 618 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1386 |
| AspLEI | GCGC | 1 cut(s) | 960 |
| AspS9I | GGNCC | 5 cut(s) | 877, 1003, 1451, 1877, 1878 |
| AsuC2I | CCSGG | 1 cut(s) | 1275 |
| AsuHPI | GGTGA | 2 cut(s) | 775, 929 |
| AvaI | CYCGRG | 1 cut(s) | 1316 |
| AvaII | GGWCC | 2 cut(s) | 1003, 1451 |
| BaeGI | GKGCMC | 2 cut(s) | 1275, 1881 |
| BanII | GRGCYC | 2 cut(s) | 896, 1881 |
| BbsI | GAAGAC | 2 cut(s) | 147, 1526 |
| Bbv12I | GWGCWC | 1 cut(s) | 1263 |
| BbvI | GCAGC | 5 cut(s) | 433, 603, 967, 1124, 1211 |
| BccI | CCATC | 4 cut(s) | 452, 802, 846, 1801 |
| BceAI | ACGGC | 1 cut(s) | 1762 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1604, 1638 |
| BciT130I | CCWGG | 2 cut(s) | 1119, 1706 |
| BciVI | GTATCC | 1 cut(s) | 1828 |
| BclI | TGATCA | 5 cut(s) | 535, 631, 864, 1555, 1825 |
| BcnI | CCSGG | 1 cut(s) | 1275 |
| BcoDI | GTCTC | 3 cut(s) | 154, 728, 1416 |
| BfaI | CTAG | 4 cut(s) | 1071, 1176, 1224, 1502 |
| BfmI | CTRYAG | 2 cut(s) | 57, 1110 |
| BfoI | RGCGCY | 1 cut(s) | 961 |
| BfuI | GTATCC | 1 cut(s) | 1828 |
| BisI | GCNGC | 7 cut(s) | 6, 106, 447, 592, 956, 1113, 1200 |
| BlsI | GCNGC | 7 cut(s) | 7, 107, 448, 593, 957, 1114, 1201 |
| BmcAI | AGTACT | 1 cut(s) | 126 |
| Bme1390I | CCNGG | 3 cut(s) | 1119, 1275, 1706 |
| Bme18I | GGWCC | 2 cut(s) | 1003, 1451 |
| BmeT110I | CYCGRG | 1 cut(s) | 1316 |
| BmgT120I | GGNCC | 5 cut(s) | 877, 1003, 1451, 1877, 1878 |
| BmiI | GGNNCC | 2 cut(s) | 1029, 1879 |
| BmrFI | CCNGG | 3 cut(s) | 1119, 1275, 1706 |
| BmsI | GCATC | 2 cut(s) | 808, 937 |
| BpiI | GAAGAC | 2 cut(s) | 147, 1526 |
| BpmI | CTGGAG | 3 cut(s) | 1451, 1727, 1883 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1447 |
| BpuEI | CTTGAG | 1 cut(s) | 105 |
| BpuMI | CCSGG | 1 cut(s) | 1275 |
| BsaBI | GATNNNNATC | 1 cut(s) | 30 |
| BsaJI | CCNNGG | 2 cut(s) | 1118, 1540 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1400, 1430 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1274 |
| Bse1I | ACTGG | 3 cut(s) | 192, 469, 1434 |
| Bse3DI | GCAATG | 3 cut(s) | 819, 1209, 1680 |
| Bse8I | GATNNNNATC | 1 cut(s) | 30 |
| BseBI | CCWGG | 2 cut(s) | 1119, 1706 |
| BseDI | CCNNGG | 2 cut(s) | 1118, 1540 |
| BseGI | GGATG | 3 cut(s) | 823, 1777, 1812 |
| BseJI | GATNNNNATC | 1 cut(s) | 30 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1274 |
| BseMI | GCAATG | 3 cut(s) | 819, 1209, 1680 |
| BseMII | CTCAG | 4 cut(s) | 96, 1131, 1461, 1646 |
| BseNI | ACTGG | 3 cut(s) | 192, 469, 1434 |
| BseRI | GAGGAG | 1 cut(s) | 185 |
| BseSI | GKGCMC | 2 cut(s) | 1275, 1881 |
| BseXI | GCAGC | 5 cut(s) | 433, 603, 967, 1124, 1211 |
| BseYI | CCCAGC | 2 cut(s) | 709, 1457 |
| BshFI | GGCC | 5 cut(s) | 5, 879, 1162, 1180, 1879 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1263 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1316 |
| BsiSI | CCGG | 1 cut(s) | 1275 |
| BslFI | GGGAC | 1 cut(s) | 1333 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1274 |
| BsmAI | GTCTC | 3 cut(s) | 154, 728, 1416 |
| BsmFI | GGGAC | 1 cut(s) | 1333 |
| BsnI | GGCC | 5 cut(s) | 5, 879, 1162, 1180, 1879 |
| BsoBI | CYCGRG | 1 cut(s) | 1316 |
| Bsp120I | GGGCCC | 1 cut(s) | 1877 |
| Bsp1286I | GDGCHC | 4 cut(s) | 896, 1263, 1275, 1881 |
| BspACI | CCGC | 3 cut(s) | 6, 106, 1036 |
| BspANI | GGCC | 5 cut(s) | 5, 879, 1162, 1180, 1879 |
| BspCNI | CTCAG | 4 cut(s) | 95, 1132, 1460, 1647 |
| BspLI | GGNNCC | 2 cut(s) | 1029, 1879 |
| BspMAI | CTGCAG | 1 cut(s) | 1114 |
| BspPI | GGATC | 4 cut(s) | 14, 275, 996, 1100 |
| BspQI | GCTCTTC | 2 cut(s) | 684, 1251 |
| BsrDI | GCAATG | 3 cut(s) | 819, 1209, 1680 |
| BsrI | ACTGG | 3 cut(s) | 192, 469, 1434 |
| BssECI | CCNNGG | 2 cut(s) | 1118, 1540 |
| BssT1I | CCWWGG | 1 cut(s) | 1540 |
| Bst2UI | CCWGG | 2 cut(s) | 1119, 1706 |
| Bst4CI | ACNGT | 3 cut(s) | 420, 797, 1525 |
| Bst6I | CTCTTC | 3 cut(s) | 684, 1251, 1785 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 818 |
| BstC8I | GCNNGC | 2 cut(s) | 1582, 1751 |
| BstDEI | CTNAG | 5 cut(s) | 82, 1045, 1140, 1447, 1655 |
| BstF5I | GGATG | 3 cut(s) | 823, 1777, 1812 |
| BstH2I | RGCGCY | 1 cut(s) | 961 |
| BstHHI | GCGC | 1 cut(s) | 960 |
| BstMAI | GTCTC | 3 cut(s) | 154, 728, 1416 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 691, 700, 818, 1258, 1885 |
| BstNI | CCWGG | 2 cut(s) | 1119, 1706 |
| BstSCI | CCNGG | 3 cut(s) | 1117, 1273, 1704 |
| BstSFI | CTRYAG | 2 cut(s) | 57, 1110 |
| BstSLI | GKGCMC | 2 cut(s) | 1275, 1881 |
| BstV1I | GCAGC | 5 cut(s) | 433, 603, 967, 1124, 1211 |
| BstV2I | GAAGAC | 2 cut(s) | 147, 1526 |
| BsuI | GTATCC | 1 cut(s) | 1828 |
| BsuRI | GGCC | 5 cut(s) | 5, 879, 1162, 1180, 1879 |
| BtsCI | GGATG | 3 cut(s) | 823, 1777, 1812 |
| BtsI | GCAGTG | 2 cut(s) | 269, 1664 |
| BtsIMutI | CAGTG | 2 cut(s) | 269, 1664 |
| Cac8I | GCNNGC | 2 cut(s) | 1582, 1751 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1118, 1454 |
| CfoI | GCGC | 1 cut(s) | 960 |
| Cfr13I | GGNCC | 5 cut(s) | 877, 1003, 1451, 1877, 1878 |
| Csp6I | GTAC | 6 cut(s) | 125, 462, 585, 641, 647, 798 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1653, 1688 |
| CviAII | CATG | 5 cut(s) | 77, 146, 1585, 1754, 1908 |
| CviQI | GTAC | 6 cut(s) | 125, 462, 585, 641, 647, 798 |
| DdeI | CTNAG | 5 cut(s) | 82, 1045, 1140, 1447, 1655 |
| DraI | TTTAAA | 1 cut(s) | 1536 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 572 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 572 |
| EaeI | YGGCCR | 1 cut(s) | 3 |
| Eam1104I | CTCTTC | 3 cut(s) | 684, 1251, 1785 |
| EarI | CTCTTC | 3 cut(s) | 684, 1251, 1785 |
| Eco130I | CCWWGG | 1 cut(s) | 1540 |
| Eco147I | AGGCCT | 1 cut(s) | 1180 |
| Eco24I | GRGCYC | 2 cut(s) | 896, 1881 |
| Eco32I | GATATC | 1 cut(s) | 922 |
| Eco47I | GGWCC | 2 cut(s) | 1003, 1451 |
| Eco47III | AGCGCT | 1 cut(s) | 959 |
| Eco57I | CTGAAG | 2 cut(s) | 948, 1538 |
| Eco88I | CYCGRG | 1 cut(s) | 1316 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1451, 1877 |
| EcoRII | CCWGG | 2 cut(s) | 1117, 1704 |
| EcoRV | GATATC | 1 cut(s) | 922 |
| EcoT14I | CCWWGG | 1 cut(s) | 1540 |
| EcoT22I | ATGCAT | 1 cut(s) | 823 |
| EcoT38I | GRGCYC | 2 cut(s) | 896, 1881 |
| ErhI | CCWWGG | 1 cut(s) | 1540 |
| FaeI | CATG | 5 cut(s) | 80, 149, 1588, 1757, 1911 |
| FaqI | GGGAC | 1 cut(s) | 1333 |
| FatI | CATG | 5 cut(s) | 76, 145, 1584, 1753, 1907 |
| FauNDI | CATATG | 1 cut(s) | 502 |
| FbaI | TGATCA | 5 cut(s) | 535, 631, 864, 1555, 1825 |
| Fnu4HI | GCNGC | 7 cut(s) | 6, 106, 447, 592, 956, 1113, 1200 |
| FokI | GGATG | 3 cut(s) | 830, 1784, 1819 |
| FriOI | GRGCYC | 2 cut(s) | 896, 1881 |
| Fsp4HI | GCNGC | 7 cut(s) | 6, 106, 447, 592, 956, 1113, 1200 |
| FspBI | CTAG | 4 cut(s) | 1071, 1176, 1224, 1502 |
| GlaI | GCGC | 1 cut(s) | 959 |
| GluI | GCNGC | 7 cut(s) | 6, 106, 447, 592, 956, 1113, 1200 |
| GsaI | CCCAGC | 2 cut(s) | 713, 1461 |
| GsuI | CTGGAG | 3 cut(s) | 1451, 1727, 1883 |
| HaeII | RGCGCY | 1 cut(s) | 961 |
| HaeIII | GGCC | 5 cut(s) | 5, 879, 1162, 1180, 1879 |
| HapII | CCGG | 1 cut(s) | 1275 |
| HhaI | GCGC | 1 cut(s) | 960 |
| Hin1II | CATG | 5 cut(s) | 80, 149, 1588, 1757, 1911 |
| Hin6I | GCGC | 1 cut(s) | 958 |
| HinP1I | GCGC | 1 cut(s) | 958 |
| HpaII | CCGG | 1 cut(s) | 1275 |
| HphI | GGTGA | 2 cut(s) | 775, 929 |
| Hpy166II | GTNNAC | 3 cut(s) | 745, 1440, 1474 |
| Hpy8I | GTNNAC | 3 cut(s) | 745, 1440, 1474 |
| Hpy99I | CGWCG | 1 cut(s) | 1607 |
| HpyAV | CCTTC | 7 cut(s) | 224, 544, 926, 1173, 1364, 1796, 1825 |
| HpyCH4III | ACNGT | 3 cut(s) | 420, 797, 1525 |
| HpyCH4IV | ACGT | 1 cut(s) | 656 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 691, 700, 818, 1258, 1885 |
| HpyF3I | CTNAG | 5 cut(s) | 82, 1045, 1140, 1447, 1655 |
| HpySE526I | ACGT | 1 cut(s) | 656 |
| Hsp92II | CATG | 5 cut(s) | 80, 149, 1588, 1757, 1911 |
| HspAI | GCGC | 1 cut(s) | 958 |
| Ksp22I | TGATCA | 5 cut(s) | 535, 631, 864, 1555, 1825 |
| LguI | GCTCTTC | 2 cut(s) | 684, 1251 |
| Lsp1109I | GCAGC | 5 cut(s) | 433, 603, 967, 1124, 1211 |
| LweI | GCATC | 2 cut(s) | 808, 937 |
| MaeI | CTAG | 4 cut(s) | 1071, 1176, 1224, 1502 |
| MaeII | ACGT | 1 cut(s) | 656 |
| MaeIII | GTNAC | 2 cut(s) | 1075, 1564 |
| MfeI | CAATTG | 2 cut(s) | 704, 1247 |
| MhlI | GDGCHC | 4 cut(s) | 896, 1263, 1275, 1881 |
| MlyI | GAGTC | 7 cut(s) | 74, 310, 361, 1300, 1315, 1418, 1655 |
| MmeI | TCCRAC | 2 cut(s) | 639, 711 |
| Mph1103I | ATGCAT | 1 cut(s) | 823 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1386 |
| MseI | TTAA | 7 cut(s) | 216, 236, 618, 792, 1023, 1215, 1535 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1355 |
| MspA1I | CMGCKG | 1 cut(s) | 594 |
| MspI | CCGG | 1 cut(s) | 1275 |
| MspR9I | CCNGG | 3 cut(s) | 1119, 1275, 1706 |
| MunI | CAATTG | 2 cut(s) | 704, 1247 |
| MvaI | CCWGG | 2 cut(s) | 1119, 1706 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 691, 700, 818, 1258, 1885 |
| NciI | CCSGG | 1 cut(s) | 1275 |
| NdeI | CATATG | 1 cut(s) | 502 |
| NlaIII | CATG | 5 cut(s) | 80, 149, 1588, 1757, 1911 |
| NlaIV | GGNNCC | 2 cut(s) | 1029, 1879 |
| NmuCI | GTSAC | 1 cut(s) | 1075 |
| NsiI | ATGCAT | 1 cut(s) | 823 |
| PceI | AGGCCT | 1 cut(s) | 1180 |
| PciSI | GCTCTTC | 2 cut(s) | 684, 1251 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1611 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1386 |
| PfeI | GAWTC | 3 cut(s) | 476, 511, 602 |
| PkrI | GCNGC | 7 cut(s) | 7, 107, 448, 593, 957, 1114, 1201 |
| PleI | GAGTC | 7 cut(s) | 74, 310, 360, 1299, 1315, 1417, 1654 |
| PpsI | GAGTC | 7 cut(s) | 74, 310, 360, 1299, 1315, 1417, 1654 |
| PpuMI | RGGWCCY | 1 cut(s) | 1451 |
| PshBI | ATTAAT | 1 cut(s) | 618 |
| Psp1406I | AACGTT | 1 cut(s) | 656 |
| Psp5II | RGGWCCY | 1 cut(s) | 1451 |
| Psp6I | CCWGG | 2 cut(s) | 1117, 1704 |
| PspFI | CCCAGC | 2 cut(s) | 709, 1457 |
| PspGI | CCWGG | 2 cut(s) | 1117, 1704 |
| PspN4I | GGNNCC | 2 cut(s) | 1029, 1879 |
| PspOMI | GGGCCC | 1 cut(s) | 1877 |
| PspPI | GGNCC | 5 cut(s) | 877, 1003, 1451, 1877, 1878 |
| PspPPI | RGGWCCY | 1 cut(s) | 1451 |
| PstI | CTGCAG | 1 cut(s) | 1114 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1118, 1454 |
| PvuII | CAGCTG | 1 cut(s) | 594 |
| RsaI | GTAC | 6 cut(s) | 126, 463, 586, 642, 648, 799 |
| RsaNI | GTAC | 6 cut(s) | 125, 462, 585, 641, 647, 798 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1355 |
| SapI | GCTCTTC | 2 cut(s) | 684, 1251 |
| SaqAI | TTAA | 7 cut(s) | 216, 236, 618, 792, 1023, 1215, 1535 |
| SatI | GCNGC | 7 cut(s) | 6, 106, 447, 592, 956, 1113, 1200 |
| Sau96I | GGNCC | 5 cut(s) | 877, 1003, 1451, 1877, 1878 |
| ScaI | AGTACT | 1 cut(s) | 126 |
| SchI | GAGTC | 7 cut(s) | 74, 310, 361, 1300, 1315, 1418, 1655 |
| ScrFI | CCNGG | 3 cut(s) | 1119, 1275, 1706 |
| SduI | GDGCHC | 4 cut(s) | 896, 1263, 1275, 1881 |
| SfaNI | GCATC | 2 cut(s) | 808, 937 |
| SfcI | CTRYAG | 2 cut(s) | 57, 1110 |
| SinI | GGWCC | 2 cut(s) | 1003, 1451 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1355 |
| SmlI | CTYRAG | 1 cut(s) | 120 |
| SmoI | CTYRAG | 1 cut(s) | 120 |
| SseBI | AGGCCT | 1 cut(s) | 1180 |
| SsiI | CCGC | 3 cut(s) | 6, 106, 1036 |
| SspI | AATATT | 1 cut(s) | 562 |
| SspMI | CTAG | 4 cut(s) | 1071, 1176, 1224, 1502 |
| StuI | AGGCCT | 1 cut(s) | 1180 |
| StyD4I | CCNGG | 3 cut(s) | 1117, 1273, 1704 |
| StyI | CCWWGG | 1 cut(s) | 1540 |
| TaaI | ACNGT | 3 cut(s) | 420, 797, 1525 |
| TaiI | ACGT | 1 cut(s) | 659 |
| TaqI | TCGA | 3 cut(s) | 973, 1602, 1614 |
| TatI | WGTACW | 4 cut(s) | 124, 584, 640, 646 |
| TauI | GCSGC | 2 cut(s) | 8, 108 |
| TfiI | GAWTC | 3 cut(s) | 476, 511, 602 |
| Tru1I | TTAA | 7 cut(s) | 216, 236, 618, 792, 1023, 1215, 1535 |
| Tru9I | TTAA | 7 cut(s) | 216, 236, 618, 792, 1023, 1215, 1535 |
| TscAI | CASTG | 2 cut(s) | 269, 1671 |
| TseFI | GTSAC | 1 cut(s) | 1075 |
| TseI | GCWGC | 5 cut(s) | 446, 591, 955, 1112, 1199 |
| Tsp45I | GTSAC | 1 cut(s) | 1075 |
| TspDTI | ATGAA | 7 cut(s) | 191, 303, 560, 615, 783, 1301, 1886 |
| TspRI | CASTG | 2 cut(s) | 269, 1671 |
| VpaK11BI | GGWCC | 2 cut(s) | 1003, 1451 |
| VspI | ATTAAT | 1 cut(s) | 618 |
| XapI | RAATTY | 6 cut(s) | 51, 92, 410, 782, 1010, 1531 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1386 |
| XspI | CTAG | 4 cut(s) | 1071, 1176, 1224, 1502 |
| ZrmI | AGTACT | 1 cut(s) | 126 |
| Zsp2I | ATGCAT | 1 cut(s) | 823 |