Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0020712

Physical Location & Seq

Genomic Coordinates Forward (+)

20144502 .. 20145726

Gene Structure 1225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032864

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTGTGCAGGGAATCAAGGGCCCTTCTTACAAACCTGTCTATGGAAACGCCAAAGAAATATGGAACTTGAAGAAGGAGGCCATGAGCAGACCCAAAGGTTTATCACATGACATACTTCCTGTAGTTGAACCTCAATATCACTCGTGGCTTAAGATATATGATGACGACGACGACGCAGAAGATGACTCGATCAAACCAGGCTCAAACCCTGCAGTGAAAAGGTCGACAAACTTCGAACTGGAACCTTCGAGCGCGGACTGGAGCTCTGGCCATCAAGCCACGGCGTACATTGATTTTGGAGCCGTCGTCGGTGACGAGGCTGCAGATCTCGCAAACGGATTGGTCGATGATGGCGGGGGAAATGGAGTGGACGCACTAGCAATTGGCGTCTCTGCCGTGTTCGGAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

138

Amino Acids

14.51

Weight (kDa)

4.43

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020712)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000032864
rosa_multiflora	Rmu_sc0003481.1_g000002
rosa_samantha	Rh4AG185600 Rh5BG085700 Rh7AG234000 Rh7AG254200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	227
AccII	CGCG	1 cut(s)	257
AciI	CCGC	2 cut(s)	257, 357
AcoI	YGGCCR	1 cut(s)	271
AcyI	GRCGYC	1 cut(s)	390
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	44
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	2 cut(s)	73, 131
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	267
AluI	AGCT	1 cut(s)	267
Alw21I	GWGCWC	1 cut(s)	269
Alw26I	GTCTC	1 cut(s)	397
AoxI	GGCC	3 cut(s)	22, 81, 271
ApaI	GGGCCC	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	257
AspS9I	GGNCC	2 cut(s)	22, 23
AsuHPI	GGTGA	1 cut(s)	326
AsuII	TTCGAA	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	26
BalI	TGGCCA	1 cut(s)	273
BanII	GRGCYC	2 cut(s)	26, 269
BauI	CACGAG	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	269
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	2 cut(s)	282, 347
BceAI	ACGGC	3 cut(s)	290, 300, 383
BciT130I	CCWGG	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	3 cut(s)	123, 213, 324
BfrI	CTTAAG	1 cut(s)	152
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	1 cut(s)	324
BlsI	GCNGC	1 cut(s)	325
Bme1390I	CCNGG	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	22, 23
BmiI	GGNNCC	3 cut(s)	24, 246, 304
BmrFI	CCNGG	1 cut(s)	201
BpmI	CTGGAG	1 cut(s)	283
Bpu14I	TTCGAA	1 cut(s)	237
BsaHI	GRCGYC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	2 cut(s)	246, 266
BseBI	CCWGG	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	246, 266
BseSI	GKGCMC	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	310
BsgI	GTGCAG	1 cut(s)	29
Bsh1236I	CGCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	24, 83, 273
BsiHKAI	GWGCWC	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	397
BsmBI	CGTCTC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	24, 83, 273
Bsp119I	TTCGAA	1 cut(s)	237
Bsp120I	GGGCCC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	26, 269
Bsp143I	GATC	2 cut(s)	192, 328
BspACI	CCGC	2 cut(s)	257, 357
BspANI	GGCC	3 cut(s)	24, 83, 273
BspFNI	CGCG	1 cut(s)	257
BspLI	GGNNCC	3 cut(s)	24, 246, 304
BspMAI	CTGCAG	2 cut(s)	217, 328
BspT104I	TTCGAA	1 cut(s)	237
BspTI	CTTAAG	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	246, 266
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	192, 328
BssNI	GRCGYC	1 cut(s)	390
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	201
BstACI	GRCGYC	1 cut(s)	390
BstAFI	CTTAAG	1 cut(s)	152
BstBI	TTCGAA	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	257
BstHHI	GCGC	1 cut(s)	257
BstKTI	GATC	2 cut(s)	195, 331
BstMAI	GTCTC	1 cut(s)	397
BstMBI	GATC	2 cut(s)	192, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	3 cut(s)	123, 213, 324
BstSLI	GKGCMC	1 cut(s)	26
BstUI	CGCG	1 cut(s)	257
BstV1I	GCAGC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
BsuRI	GGCC	3 cut(s)	24, 83, 273
BtgI	CCRYGG	1 cut(s)	282
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
CfoI	GCGC	1 cut(s)	257
Cfr13I	GGNCC	2 cut(s)	22, 23
CseI	GACGC	3 cut(s)	185, 379, 383
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	2 cut(s)	85, 110
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	2 cut(s)	194, 330
DpnII	GATC	2 cut(s)	192, 328
EaeI	YGGCCR	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	267
Eco24I	GRGCYC	2 cut(s)	26, 269
Eco53kI	GAGCTC	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	267
EcoO109I	RGGNCCY	2 cut(s)	22, 23
EcoRII	CCWGG	1 cut(s)	199
EcoT38I	GRGCYC	2 cut(s)	26, 269
Esp3I	CGTCTC	1 cut(s)	397
FaeI	CATG	2 cut(s)	88, 113
FaiI	YATR	7 cut(s)	45, 64, 86, 111, 116, 160, 162
FatI	CATG	2 cut(s)	84, 109
FauI	CCCGC	1 cut(s)	350
FblI	GTMKAC	1 cut(s)	227
Fnu4HI	GCNGC	1 cut(s)	324
FriOI	GRGCYC	2 cut(s)	26, 269
Fsp4HI	GCNGC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	324
GsuI	CTGGAG	1 cut(s)	283
HaeIII	GGCC	3 cut(s)	24, 83, 273
HgaI	GACGC	3 cut(s)	185, 379, 383
HhaI	GCGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	2 cut(s)	88, 113
Hin6I	GCGC	1 cut(s)	255
HinP1I	GCGC	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	2 cut(s)	15, 188
HphI	GGTGA	1 cut(s)	326
Hpy166II	GTNNAC	2 cut(s)	228, 373
Hpy188I	TCNGA	1 cut(s)	407
Hpy8I	GTNNAC	2 cut(s)	228, 373
Hpy99I	CGWCG	5 cut(s)	173, 176, 179, 311, 314
HpyAV	CCTTC	3 cut(s)	36, 70, 258
HpyCH4V	TGCA	3 cut(s)	10, 215, 326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	2 cut(s)	88, 113
HspAI	GCGC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	192, 328
LmnI	GCTCC	2 cut(s)	264, 302
LpnPI	CCDG	8 cut(s)	51, 135, 186, 213, 225, 227, 247, 255
Lsp1109I	GCAGC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	380
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	2 cut(s)	194, 330
MboI	GATC	2 cut(s)	192, 328
MboII	GAAGA	2 cut(s)	85, 194
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	2 cut(s)	26, 269
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	1 cut(s)	384
MluNI	TGGCCA	1 cut(s)	273
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	3 cut(s)	73, 144, 313
Mox20I	TGGCCA	1 cut(s)	273
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	1 cut(s)	153
Msp20I	TGGCCA	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	384
MvaI	CCWGG	1 cut(s)	201
MvnI	CGCG	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	332
NdeII	GATC	2 cut(s)	192, 328
NlaIII	CATG	2 cut(s)	88, 113
NlaIV	GGNNCC	3 cut(s)	24, 246, 304
NmuCI	GTSAC	1 cut(s)	314
NspV	TTCGAA	1 cut(s)	237
PcsI	WCGNNNNNNNCGW	2 cut(s)	315, 345
PfeI	GAWTC	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	325
PleI	GAGTC	1 cut(s)	182
PpsI	GAGTC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	269
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	24, 246, 304
PspOMI	GGGCCC	1 cut(s)	22
PspPI	GGNCC	2 cut(s)	22, 23
PstI	CTGCAG	2 cut(s)	217, 328
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SacI	GAGCTC	1 cut(s)	269
SalI	GTCGAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	1 cut(s)	324
Sau3AI	GATC	2 cut(s)	192, 328
Sau96I	GGNCC	2 cut(s)	22, 23
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	2 cut(s)	26, 269
SetI	ASST	6 cut(s)	40, 103, 136, 227, 250, 269
SfcI	CTRYAG	3 cut(s)	123, 213, 324
SfuI	TTCGAA	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	384
SsiI	CCGC	2 cut(s)	257, 357
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	269
StyD4I	CCNGG	1 cut(s)	199
TaqI	TCGA	5 cut(s)	191, 227, 237, 251, 348
TasI	AATT	1 cut(s)	384
TfiI	GAWTC	1 cut(s)	15
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	314
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	1 cut(s)	222
Vha464I	CTTAAG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	227
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.