Rh5BG085700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0020712
Physical Location & Seq
Reverse (-)
7419331 .. 7419528
198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG085700.1

Sequence Viewer

Length: 198 bp
ATGAAAAGGTCGACGAACTTCGAACTGGAACCTTCGAGCGCGGACTGGAGCTCCGGCCATCAAGCCACGGCGTACATCAATTTTGGAGACGTCGTCGGCGACGAGGCTGCAGATCTCGCGAACGGATTGGTCGACGACGGCGGGGGAAGTGGAGTGGAGGCACTAGCAATTGGCGTCTCTGCCGTGTTTGGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.53

Weight (kDa)

4.05

Isoelectric Point (pI)

21.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020712)

Species Orthologous Gene IDs
rosa_laevigata RLG00000032864
rosa_multiflora Rmu_sc0003481.1_g000002
rosa_samantha Rh4AG185600 Rh5BG085700 Rh7AG234000 Rh7AG254200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 93
AccI GTMKAC 2 cut(s) 11, 132
AccII CGCG 2 cut(s) 41, 119
AciI CCGC 2 cut(s) 41, 141
AcoI YGGCCR 1 cut(s) 55
AcyI GRCGYC 2 cut(s) 90, 174
AfaI GTAC 1 cut(s) 74
AluBI AGCT 1 cut(s) 51
AluI AGCT 1 cut(s) 51
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 81, 181
AoxI GGCC 1 cut(s) 55
ApeKI GCWGC 1 cut(s) 107
AspLEI GCGC 1 cut(s) 41
AsuII TTCGAA 1 cut(s) 21
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 94
BccI CCATC 1 cut(s) 66
BceAI ACGGC 3 cut(s) 84, 154, 167
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BcoDI GTCTC 2 cut(s) 81, 181
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 108
BglII AGATCT 1 cut(s) 112
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 67
Bpu14I TTCGAA 1 cut(s) 21
BsaHI GRCGYC 2 cut(s) 90, 174
BsaJI CCNNGG 1 cut(s) 66
BsaXI ACNNNNNCTCC 4 cut(s) 35, 65, 78, 108
Bse1I ACTGG 2 cut(s) 30, 50
BseDI CCNNGG 1 cut(s) 66
BseNI ACTGG 2 cut(s) 30, 50
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 41, 119
BshFI GGCC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 54
BsmAI GTCTC 2 cut(s) 81, 181
BsmBI CGTCTC 2 cut(s) 81, 181
BsnI GGCC 1 cut(s) 57
Bsp119I TTCGAA 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 112
Bsp68I TCGCGA 1 cut(s) 119
BspACI CCGC 2 cut(s) 41, 141
BspANI GGCC 1 cut(s) 57
BspFNI CGCG 2 cut(s) 41, 119
BspLI GGNNCC 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 112
BspT104I TTCGAA 1 cut(s) 21
BsrI ACTGG 2 cut(s) 30, 50
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 112
BssNI GRCGYC 2 cut(s) 90, 174
BstACI GRCGYC 2 cut(s) 90, 174
BstBI TTCGAA 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 66
BstFNI CGCG 2 cut(s) 41, 119
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 1 cut(s) 115
BstMAI GTCTC 2 cut(s) 81, 181
BstMBI GATC 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 2 cut(s) 41, 119
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 57
BtgI CCRYGG 1 cut(s) 66
BtuMI TCGCGA 1 cut(s) 119
CfoI GCGC 1 cut(s) 41
CseI GACGC 1 cut(s) 163
Csp6I GTAC 1 cut(s) 73
CviJI RGCY 4 cut(s) 51, 57, 65, 107
CviKI_1 RGCY 4 cut(s) 51, 57, 65, 107
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 114
DpnII GATC 1 cut(s) 112
EaeI YGGCCR 1 cut(s) 55
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco53kI GAGCTC 1 cut(s) 51
EcoICRI GAGCTC 1 cut(s) 51
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 2 cut(s) 81, 181
FauI CCCGC 1 cut(s) 134
FblI GTMKAC 2 cut(s) 11, 132
Fnu4HI GCNGC 1 cut(s) 108
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 164
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 108
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 163
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 2 cut(s) 90, 174
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 2 cut(s) 12, 133
HindII GTYRAC 2 cut(s) 12, 133
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 12, 133
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 2 cut(s) 12, 133
Hpy99I CGWCG 6 cut(s) 16, 95, 98, 104, 137, 140
HpyAV CCTTC 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 2 cut(s) 90, 174
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 1 cut(s) 112
LmnI GCTCC 2 cut(s) 48, 56
LpnPI CCDG 3 cut(s) 11, 31, 67
Lsp1109I GCAGC 1 cut(s) 94
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 90
MalI GATC 1 cut(s) 114
MboI GATC 1 cut(s) 112
MfeI CAATTG 1 cut(s) 168
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 2 cut(s) 79, 168
MnlI CCTC 2 cut(s) 97, 151
MspI CCGG 1 cut(s) 54
MunI CAATTG 1 cut(s) 168
MvnI CGCG 2 cut(s) 41, 119
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 112
NlaIV GGNNCC 1 cut(s) 30
NruI TCGCGA 1 cut(s) 119
NspV TTCGAA 1 cut(s) 21
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 99, 129
PflFI GACNNNGTC 1 cut(s) 92
PkrI GCNGC 1 cut(s) 109
Psp124BI GAGCTC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 30
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 92
RruI TCGCGA 1 cut(s) 119
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 53
SalI GTCGAC 2 cut(s) 10, 131
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 1 cut(s) 112
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 11, 34, 53, 93
SfcI CTRYAG 1 cut(s) 108
SfuI TTCGAA 1 cut(s) 21
Sse9I AATT 2 cut(s) 79, 168
SsiI CCGC 2 cut(s) 41, 141
SspMI CTAG 1 cut(s) 164
SstI GAGCTC 1 cut(s) 53
TaiI ACGT 1 cut(s) 93
TaqI TCGA 4 cut(s) 11, 21, 35, 132
TasI AATT 2 cut(s) 79, 168
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 138
Tth111I GACNNNGTC 1 cut(s) 92
XmiI GTMKAC 2 cut(s) 11, 132
XspI CTAG 1 cut(s) 164
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.