RLG00000033257

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019421
Physical Location & Seq
Reverse (-)
25043783 .. 25044571
789 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033257

Sequence Viewer

Length: 789 bp
ATGGCCTTGTCCGCCGGAGAAACCACAGTGGTGGCCGTGCACAAGTATCCGGCTTCTAATCTGACCCATCGAGCCCGGTTCCAGGCTTTTCGGGCTTTCCTGGCGGAGACGGTTCATAAATATGGTGGAATTGTCCAAAATGCCCATCTCAAGACTGCGCTGTACGGCGGCTCTAGGGATGAGATTGCTCAGATTTTGGTTAATGGGTTTAGTGCTGCCAATGCTAACGGTGGCGCCCATGGTTGTGTTCAATTGGTTCCTGCTGCGCATTCTTTGGATGCTGCATTGTTCTGTGAAGTTGATGAAGCTGAGTTAAGGCACGTACTGGTGTGCCGGGTCATTTTGGGGAGGGTGCAGTTGGTCCCTGATGGCTCGAACCATGTTGGTCCCGATTTCGATACCGGTTGTGACAGTTTTACCAATGCTAGGACATTTTATGTGCCTGCCGGTTCCGCCAACTCTCGCATTTGTGCTGATTTTGTTATAAGCTTCAGGGCTCCTTCTTGCTTATGGGATTATGCAACATATGCTACTCAGGCGAGTGGTGGTTTTGTTGGTGCTTCAAGGGGGCCTATACCCCAAGAACTACCCATTAATTTGTTTGCTGTGTTGGACCGGCTCGCAAGTTTTGTAACTCCTCTACAAATGGCCATTGCTGTCGAGTTGTTCTGGGAGTATAGGAGAAACAATAACATGAGCCGACATGAGCTGATTCGACAACTGAAACTCATGGTTGGTGAGGAGGCGTGGGTTGCAGCGGCCAAGGCATCAGCTTCGGTGAACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

263

Amino Acids

28.29

Weight (kDa)

7.11

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019421)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030821
rosa_laevigata RLG00000033257
rosa_multiflora Rmu_sc0001974.1_g000030
rosa_roxburghii Rroxscaffold_1G00049420
rosa_rugosa Rorug05G0121000
rosa_samantha Rh5BG212900 Rh5CG236200 Rh5DG217400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 485
Acc16I TGCGCA 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 233
AciI CCGC 5 cut(s) 12, 104, 168, 453, 758
AcoI YGGCCR 3 cut(s) 33, 648, 759
AcuI CTGAAG 1 cut(s) 475
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 164, 324
AfiI CCNNNNNNNGG 2 cut(s) 82, 426
AgeI ACCGGT 1 cut(s) 401
AgsI TTSAA 2 cut(s) 251, 564
AjnI CCWGG 2 cut(s) 81, 99
AleI CACNNNNGTG 1 cut(s) 29
AluBI AGCT 4 cut(s) 308, 489, 709, 773
AluI AGCT 4 cut(s) 308, 489, 709, 773
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 101
Alw44I GTGCAC 1 cut(s) 38
AoxI GGCC 5 cut(s) 3, 33, 569, 648, 759
ApaLI GTGCAC 1 cut(s) 38
ApeKI GCWGC 4 cut(s) 215, 263, 281, 755
AseI ATTAAT 1 cut(s) 594
AsiGI ACCGGT 1 cut(s) 401
AspLEI GCGC 3 cut(s) 160, 236, 268
AspS9I GGNCC 4 cut(s) 361, 386, 569, 613
AsuC2I CCSGG 2 cut(s) 76, 335
AsuHPI GGTGA 1 cut(s) 749
AvaII GGWCC 3 cut(s) 361, 386, 613
BaeGI GKGCMC 1 cut(s) 42
BalI TGGCCA 1 cut(s) 650
BanI GGYRCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 76, 499
Bbv12I GWGCWC 1 cut(s) 42
BbvI GCAGC 4 cut(s) 202, 250, 268, 767
BccI CCATC 3 cut(s) 75, 153, 362
BceAI ACGGC 2 cut(s) 20, 181
BcgI CGANNNNNNTGC 1 cut(s) 756
BciT130I CCWGG 2 cut(s) 83, 101
BciVI GTATCC 1 cut(s) 57
BcnI CCSGG 2 cut(s) 76, 335
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 2 cut(s) 174, 426
BfoI RGCGCY 1 cut(s) 237
BfuI GTATCC 1 cut(s) 57
BisI GCNGC 6 cut(s) 169, 216, 264, 282, 756, 759
BlsI GCNGC 6 cut(s) 170, 217, 265, 283, 757, 760
Bme1390I CCNGG 4 cut(s) 76, 83, 101, 335
Bme18I GGWCC 3 cut(s) 361, 386, 613
BmgT120I GGNCC 4 cut(s) 361, 386, 569, 613
BmiI GGNNCC 8 cut(s) 80, 235, 258, 363, 388, 451, 498, 570
BmrFI CCNGG 4 cut(s) 76, 83, 101, 335
BmsI GCATC 2 cut(s) 268, 776
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 2 cut(s) 76, 335
BsaAI YACGTR 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 238, 762
BsaWI WCCGGW 1 cut(s) 401
Bsc4I CCNNNNNNNGG 2 cut(s) 82, 426
Bse118I RCCGGY 3 cut(s) 401, 446, 615
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 651
BseBI CCWGG 2 cut(s) 83, 101
BseDI CCNNGG 2 cut(s) 238, 762
BseGI GGATG 2 cut(s) 184, 283
BseLI CCNNNNNNNGG 2 cut(s) 82, 426
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 3 cut(s) 203, 300, 548
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 2 cut(s) 627, 755
BseSI GKGCMC 1 cut(s) 42
BseXI GCAGC 4 cut(s) 202, 250, 268, 767
BsgI GTGCAG 1 cut(s) 374
BshFI GGCC 5 cut(s) 5, 35, 571, 650, 761
BshNI GGYRCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 7 cut(s) 15, 50, 76, 334, 402, 447, 616
BslFI GGGAC 2 cut(s) 347, 372
BslI CCNNNNNNNGG 2 cut(s) 82, 426
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
BsmFI GGGAC 2 cut(s) 347, 372
BsmI GAATGC 1 cut(s) 268
BsnI GGCC 5 cut(s) 5, 35, 571, 650, 761
Bsp1286I GDGCHC 3 cut(s) 42, 76, 499
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 5 cut(s) 12, 104, 168, 453, 758
BspANI GGCC 5 cut(s) 5, 35, 571, 650, 761
BspCNI CTCAG 3 cut(s) 202, 301, 547
BspLI GGNNCC 8 cut(s) 80, 235, 258, 363, 388, 451, 498, 570
BspT107I GGYRCC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 651
BsrFI RCCGGY 3 cut(s) 401, 446, 615
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 3 cut(s) 401, 446, 615
BssECI CCNNGG 2 cut(s) 238, 762
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 2 cut(s) 238, 762
Bst2UI CCWGG 2 cut(s) 83, 101
Bst4CI ACNGT 4 cut(s) 28, 112, 230, 413
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 1 cut(s) 527
BstBAI YACGTR 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 444, 621
BstDEI CTNAG 3 cut(s) 189, 309, 534
BstDSI CCRYGG 1 cut(s) 238
BstF5I GGATG 2 cut(s) 184, 283
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 3 cut(s) 160, 236, 268
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 9 cut(s) 11, 92, 101, 221, 452, 527, 536, 752, 764
BstNI CCWGG 2 cut(s) 83, 101
BstSCI CCNGG 4 cut(s) 74, 81, 99, 333
BstSLI GKGCMC 1 cut(s) 42
BstV1I GCAGC 4 cut(s) 202, 250, 268, 767
BstXI CCANNNNNNTGG 1 cut(s) 31
BsuI GTATCC 1 cut(s) 57
BsuRI GGCC 5 cut(s) 5, 35, 571, 650, 761
BtgI CCRYGG 1 cut(s) 238
BtsCI GGATG 2 cut(s) 184, 283
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 2 cut(s) 444, 621
CfoI GCGC 3 cut(s) 160, 236, 268
Cfr10I RCCGGY 3 cut(s) 401, 446, 615
Cfr13I GGNCC 4 cut(s) 361, 386, 569, 613
Csp6I GTAC 2 cut(s) 163, 323
CspAI ACCGGT 1 cut(s) 401
CviAII CATG 5 cut(s) 239, 380, 694, 704, 730
CviQI GTAC 2 cut(s) 163, 323
DdeI CTNAG 3 cut(s) 189, 309, 534
DinI GGCGCC 1 cut(s) 235
EaeI YGGCCR 3 cut(s) 33, 648, 759
EciI GGCGGA 2 cut(s) 119, 442
Eco130I CCWWGG 2 cut(s) 238, 762
Eco24I GRGCYC 2 cut(s) 76, 499
Eco47I GGWCC 3 cut(s) 361, 386, 613
Eco57I CTGAAG 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 569
EcoRII CCWGG 2 cut(s) 81, 99
EcoT14I CCWWGG 2 cut(s) 238, 762
EcoT38I GRGCYC 2 cut(s) 76, 499
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
ErhI CCWWGG 2 cut(s) 238, 762
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 5 cut(s) 242, 383, 697, 707, 733
FaqI GGGAC 2 cut(s) 347, 372
FatI CATG 5 cut(s) 238, 379, 693, 703, 729
FauNDI CATATG 1 cut(s) 526
Fnu4HI GCNGC 6 cut(s) 169, 216, 264, 282, 756, 759
FokI GGATG 2 cut(s) 191, 290
FriOI GRGCYC 2 cut(s) 76, 499
Fsp4HI GCNGC 6 cut(s) 169, 216, 264, 282, 756, 759
FspBI CTAG 2 cut(s) 174, 426
FspI TGCGCA 1 cut(s) 267
GlaI GCGC 3 cut(s) 159, 235, 267
GluI GCNGC 6 cut(s) 169, 216, 264, 282, 756, 759
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 5 cut(s) 5, 35, 571, 650, 761
HapII CCGG 7 cut(s) 15, 50, 76, 334, 402, 447, 616
HhaI GCGC 3 cut(s) 160, 236, 268
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 5 cut(s) 242, 383, 697, 707, 733
Hin6I GCGC 3 cut(s) 158, 234, 266
HinP1I GCGC 3 cut(s) 158, 234, 266
HindIII AAGCTT 1 cut(s) 487
HinfI GANTC 1 cut(s) 712
HpaII CCGG 7 cut(s) 15, 50, 76, 334, 402, 447, 616
HphI GGTGA 1 cut(s) 749
Hpy166II GTNNAC 2 cut(s) 40, 781
Hpy188I TCNGA 2 cut(s) 63, 192
Hpy188III TCNNGA 2 cut(s) 151, 389
Hpy8I GTNNAC 2 cut(s) 40, 781
HpyAV CCTTC 1 cut(s) 510
HpyCH4III ACNGT 4 cut(s) 28, 112, 230, 413
HpyCH4IV ACGT 1 cut(s) 321
HpyCH4V TGCA 5 cut(s) 40, 284, 355, 521, 755
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 92, 101, 221, 452, 527, 536, 752, 764
HpyF3I CTNAG 3 cut(s) 189, 309, 534
HpySE526I ACGT 1 cut(s) 321
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 5 cut(s) 242, 383, 697, 707, 733
HspAI GCGC 3 cut(s) 158, 234, 266
KasI GGCGCC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 502
Lsp1109I GCAGC 4 cut(s) 202, 250, 268, 767
LweI GCATC 2 cut(s) 268, 776
MaeI CTAG 2 cut(s) 174, 426
MaeII ACGT 1 cut(s) 321
MaeIII GTNAC 2 cut(s) 407, 631
MfeI CAATTG 1 cut(s) 251
MhlI GDGCHC 3 cut(s) 42, 76, 499
MlsI TGGCCA 1 cut(s) 650
MluCI AATT 3 cut(s) 129, 251, 595
MluNI TGGCCA 1 cut(s) 650
Mly113I GGCGCC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 4 cut(s) 342, 648, 733, 736
Mox20I TGGCCA 1 cut(s) 650
MscI TGGCCA 1 cut(s) 650
MseI TTAA 3 cut(s) 201, 314, 594
MslI CAYNNNNRTG 3 cut(s) 29, 120, 243
Msp20I TGGCCA 1 cut(s) 650
MspA1I CMGCKG 1 cut(s) 758
MspI CCGG 7 cut(s) 15, 50, 76, 334, 402, 447, 616
MspR9I CCNGG 4 cut(s) 76, 83, 101, 335
MunI CAATTG 1 cut(s) 251
Mva1269I GAATGC 1 cut(s) 268
MvaI CCWGG 2 cut(s) 83, 101
MwoI GCNNNNNNNGC 9 cut(s) 11, 92, 101, 221, 452, 527, 536, 752, 764
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 2 cut(s) 76, 335
NcoI CCATGG 1 cut(s) 238
NdeI CATATG 1 cut(s) 526
NlaIII CATG 5 cut(s) 242, 383, 697, 707, 733
NlaIV GGNNCC 8 cut(s) 80, 235, 258, 363, 388, 451, 498, 570
NmuCI GTSAC 1 cut(s) 407
NsbI TGCGCA 1 cut(s) 267
OliI CACNNNNGTG 1 cut(s) 29
PctI GAATGC 1 cut(s) 268
PfeI GAWTC 1 cut(s) 712
PinAI ACCGGT 1 cut(s) 401
PkrI GCNGC 6 cut(s) 170, 217, 265, 283, 757, 760
PluTI GGCGCC 1 cut(s) 237
Ppu21I YACGTR 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 594
PsiI TTATAA 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 81, 99
PspGI CCWGG 2 cut(s) 81, 99
PspN4I GGNNCC 8 cut(s) 80, 235, 258, 363, 388, 451, 498, 570
PspPI GGNCC 4 cut(s) 361, 386, 569, 613
RsaI GTAC 2 cut(s) 164, 324
RsaNI GTAC 2 cut(s) 163, 323
RseI CAYNNNNRTG 3 cut(s) 29, 120, 243
SaqAI TTAA 3 cut(s) 201, 314, 594
SatI GCNGC 6 cut(s) 169, 216, 264, 282, 756, 759
Sau96I GGNCC 4 cut(s) 361, 386, 569, 613
ScrFI CCNGG 4 cut(s) 76, 83, 101, 335
SduI GDGCHC 3 cut(s) 42, 76, 499
SetI ASST 5 cut(s) 310, 324, 491, 711, 775
SfaNI GCATC 2 cut(s) 268, 776
SfoI GGCGCC 1 cut(s) 235
SinI GGWCC 3 cut(s) 361, 386, 613
SmiMI CAYNNNNRTG 3 cut(s) 29, 120, 243
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
Sse9I AATT 3 cut(s) 129, 251, 595
SsiI CCGC 5 cut(s) 12, 104, 168, 453, 758
SspDI GGCGCC 1 cut(s) 233
SspMI CTAG 2 cut(s) 174, 426
StyD4I CCNGG 4 cut(s) 74, 81, 99, 333
StyI CCWWGG 2 cut(s) 238, 762
TaaI ACNGT 4 cut(s) 28, 112, 230, 413
TaiI ACGT 1 cut(s) 324
TaqI TCGA 5 cut(s) 70, 374, 396, 660, 715
TasI AATT 3 cut(s) 129, 251, 595
TauI GCSGC 2 cut(s) 171, 761
TfiI GAWTC 1 cut(s) 712
Tru1I TTAA 3 cut(s) 201, 314, 594
Tru9I TTAA 3 cut(s) 201, 314, 594
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 407
TseI GCWGC 4 cut(s) 215, 263, 281, 755
Tsp45I GTSAC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 104, 318
TspRI CASTG 1 cut(s) 33
VneI GTGCAC 1 cut(s) 38
VpaK11BI GGWCC 3 cut(s) 361, 386, 613
VspI ATTAAT 1 cut(s) 594
XspI CTAG 2 cut(s) 174, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.