Rmu_sc0001974.1_g000030

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001974.1
OG0019421
Physical Location & Seq
Forward (+)
140614 .. 141672
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001974.1_g000030.1.cds

Sequence Viewer

Length: 1059 bp
atggagcagacccagattgttgaaaatgaagcttccggttccaatgtggatataacggaggtcgagaagcatcaagattccgtttccggtgccggtgccgccgaagctgatcccaaggctgacaagaacgctaaagaatccgggtcgggtccttccggatccggttcctctgctccagacccgtttagggttttcactcaggacggaacgatgttgcgagtaaggggaaccagtgcggatctaataatagtcaagaggaacttcatttccggtatggcctcggccgccggagaaacctcagtggcggccgtgcacaagtatccggcttctaatctgacccaccgggcccggttccaggcttgtcgggctttcttggcggagacggttcataaatatggtggaattgtccaaaatgcccatctcaagactgcgctgtacggcggctctagggatgagattgctcagattttggttcatgggtttagtgctgccaatgctaatggtggcgcccatggttgtgttcaattggttcctgctgcgcattatttggatgctgcattgttctgtgaagttgatgaagctgagctaaggcacgtactggtgtgccgggtcataatgggcagggtgcaattcgtcccagatggctcgaaccatgttggtcccgatttcgataccggttgtgacagttttaccgatgctaggacactttatgtgcctgccggtttagccaactctcgcatttgtgctgattttgttataagcttcaaggctccttcttgcttatgggattatgcaacgtatgctactcaggcgagtggtggttttgttggtgcttcaagggggcctagacaacaagaactacccattaatttgtttgctgtgttggactggctcgcaagttttgtcactcctctgcaaatgaccattgctgtcgagttgttttggaagtataagggaaacaacatgagccgacatgagctgattcgacaactgagactcatagttggtgaggaggcgttggttgcagcggccaaggcatcagcttcggtgaacaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

352

Amino Acids

37.52

Weight (kDa)

6.0

Isoelectric Point (pI)

30.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019421)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0030821
rosa_laevigata RLG00000033257
rosa_multiflora Rmu_sc0001974.1_g000030
rosa_roxburghii Rroxscaffold_1G00049420
rosa_rugosa Rorug05G0121000
rosa_samantha Rh5BG212900 Rh5CG236200 Rh5DG217400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 758
Acc16I TGCGCA 1 cut(s) 540
AccB1I GGYRCC 3 cut(s) 89, 95, 506
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 7 cut(s) 99, 236, 285, 305, 377, 441, 1028
AclWI GGATC 4 cut(s) 104, 153, 166, 246
AcoI YGGCCR 3 cut(s) 282, 306, 1029
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 2 cut(s) 437, 597
AfiI CCNNNNNNNGG 3 cut(s) 187, 355, 699
AgeI ACCGGT 1 cut(s) 674
AgsI TTSAA 4 cut(s) 23, 524, 766, 837
AjnI CCWGG 1 cut(s) 354
AloI GAACNNNNNNTCC 2 cut(s) 251, 283
AluBI AGCT 7 cut(s) 32, 107, 581, 586, 762, 979, 1043
AluI AGCT 7 cut(s) 32, 107, 581, 586, 762, 979, 1043
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 374, 988
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 4 cut(s) 104, 153, 166, 246
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 6 cut(s) 276, 282, 306, 345, 842, 1029
ApaI GGGCCC 1 cut(s) 349
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 4 cut(s) 488, 536, 554, 1025
AseI ATTAAT 1 cut(s) 867
AsiGI ACCGGT 1 cut(s) 674
AspLEI GCGC 3 cut(s) 433, 509, 541
AspS9I GGNCC 5 cut(s) 149, 345, 346, 659, 842
AsuC2I CCSGG 4 cut(s) 142, 344, 349, 608
AsuHPI GGTGA 1 cut(s) 1019
AvaII GGWCC 2 cut(s) 149, 659
BaeGI GKGCMC 2 cut(s) 315, 349
BamHI GGATCC 1 cut(s) 158
BanI GGYRCC 3 cut(s) 89, 95, 506
BanII GRGCYC 1 cut(s) 349
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 475, 523, 541, 1037
BccI CCATC 2 cut(s) 426, 635
BceAI ACGGC 2 cut(s) 293, 454
BcgI CGANNNNNNTGC 1 cut(s) 1026
BciT130I CCWGG 1 cut(s) 356
BciVI GTATCC 1 cut(s) 330
BcnI CCSGG 4 cut(s) 142, 344, 349, 608
BcoDI GTCTC 2 cut(s) 374, 988
BfaI CTAG 3 cut(s) 447, 699, 846
BfoI RGCGCY 1 cut(s) 510
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 9 cut(s) 99, 285, 306, 442, 489, 537, 555, 1026, 1029
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 9 cut(s) 100, 286, 307, 443, 490, 538, 556, 1027, 1030
Bme1390I CCNGG 5 cut(s) 142, 344, 349, 356, 608
Bme18I GGWCC 2 cut(s) 149, 659
BmgT120I GGNCC 5 cut(s) 149, 345, 346, 659, 842
BmrFI CCNGG 5 cut(s) 142, 344, 349, 356, 608
BmsI GCATC 4 cut(s) 79, 541, 685, 1046
BpmI CTGGAG 1 cut(s) 159
Bpu10I CCTNAGC 1 cut(s) 587
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 4 cut(s) 142, 344, 349, 608
BsaAI YACGTR 1 cut(s) 595
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 4 cut(s) 114, 279, 511, 1032
BsaWI WCCGGW 6 cut(s) 35, 86, 155, 161, 269, 674
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 355, 699
Bse118I RCCGGY 3 cut(s) 92, 674, 719
Bse1I ACTGG 3 cut(s) 231, 603, 893
Bse3DI GCAATG 1 cut(s) 924
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 4 cut(s) 114, 279, 511, 1032
BseGI GGATG 2 cut(s) 457, 556
BseLI CCNNNNNNNGG 3 cut(s) 187, 355, 699
BseMI GCAATG 1 cut(s) 924
BseMII CTCAG 6 cut(s) 212, 312, 476, 573, 821, 983
BseNI ACTGG 3 cut(s) 231, 603, 893
BseRI GAGGAG 2 cut(s) 900, 1025
BseSI GKGCMC 2 cut(s) 315, 349
BseX3I CGGCCG 2 cut(s) 282, 306
BseXI GCAGC 4 cut(s) 475, 523, 541, 1037
Bsh1285I CGRYCG 2 cut(s) 285, 309
BshFI GGCC 6 cut(s) 278, 284, 308, 347, 844, 1031
BshNI GGYRCC 3 cut(s) 89, 95, 506
BshTI ACCGGT 1 cut(s) 674
BsiEI CGRYCG 2 cut(s) 285, 309
BsiHKAI GWGCWC 1 cut(s) 315
BslFI GGGAC 2 cut(s) 620, 645
BslI CCNNNNNNNGG 3 cut(s) 187, 355, 699
BsmAI GTCTC 2 cut(s) 374, 988
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 620, 645
BsnI GGCC 6 cut(s) 278, 284, 308, 347, 844, 1031
Bsp120I GGGCCC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 315, 349
Bsp13I TCCGGA 1 cut(s) 155
Bsp143I GATC 3 cut(s) 109, 158, 238
Bsp1720I GCTNAGC 1 cut(s) 582
Bsp19I CCATGG 1 cut(s) 511
BspACI CCGC 7 cut(s) 99, 236, 285, 305, 377, 441, 1028
BspANI GGCC 6 cut(s) 278, 284, 308, 347, 844, 1031
BspCNI CTCAG 6 cut(s) 211, 311, 475, 574, 820, 984
BspEI TCCGGA 1 cut(s) 155
BspPI GGATC 4 cut(s) 104, 153, 166, 246
BspT107I GGYRCC 3 cut(s) 89, 95, 506
BsrDI GCAATG 1 cut(s) 924
BsrFI RCCGGY 3 cut(s) 92, 674, 719
BsrI ACTGG 3 cut(s) 231, 603, 893
BssAI RCCGGY 3 cut(s) 92, 674, 719
BssECI CCNNGG 4 cut(s) 114, 279, 511, 1032
BssMI GATC 3 cut(s) 109, 158, 238
BssNI GRCGYC 1 cut(s) 507
BssT1I CCWWGG 3 cut(s) 114, 511, 1032
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 385, 686
BstACI GRCGYC 1 cut(s) 507
BstAPI GCANNNNNTGC 1 cut(s) 800
BstBAI YACGTR 1 cut(s) 595
BstC8I GCNNGC 2 cut(s) 717, 894
BstDEI CTNAG 7 cut(s) 198, 298, 462, 582, 587, 807, 992
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 2 cut(s) 457, 556
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 3 cut(s) 433, 509, 541
BstKTI GATC 3 cut(s) 112, 161, 241
BstMAI GTCTC 2 cut(s) 374, 988
BstMBI GATC 3 cut(s) 109, 158, 238
BstMCI CGRYCG 2 cut(s) 285, 309
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 5 cut(s) 140, 342, 347, 354, 606
BstSLI GKGCMC 2 cut(s) 315, 349
BstV1I GCAGC 4 cut(s) 475, 523, 541, 1037
BstX2I RGATCY 2 cut(s) 158, 238
BstYI RGATCY 2 cut(s) 158, 238
BstZI CGGCCG 2 cut(s) 282, 306
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 6 cut(s) 278, 284, 308, 347, 844, 1031
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 2 cut(s) 457, 556
BtsIMutI CAGTG 2 cut(s) 238, 306
Cac8I GCNNGC 2 cut(s) 717, 894
CfoI GCGC 3 cut(s) 433, 509, 541
Cfr10I RCCGGY 3 cut(s) 92, 674, 719
Cfr13I GGNCC 5 cut(s) 149, 345, 346, 659, 842
Csp6I GTAC 2 cut(s) 436, 596
CspAI ACCGGT 1 cut(s) 674
CviAII CATG 5 cut(s) 476, 512, 653, 964, 974
CviQI GTAC 2 cut(s) 436, 596
DdeI CTNAG 7 cut(s) 198, 298, 462, 582, 587, 807, 992
DinI GGCGCC 1 cut(s) 508
DpnI GATC 3 cut(s) 111, 160, 240
DpnII GATC 3 cut(s) 109, 158, 238
EaeI YGGCCR 3 cut(s) 282, 306, 1029
EagI CGGCCG 2 cut(s) 282, 306
EciI GGCGGA 1 cut(s) 392
EclXI CGGCCG 2 cut(s) 282, 306
Eco130I CCWWGG 3 cut(s) 114, 511, 1032
Eco24I GRGCYC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 149, 659
Eco52I CGGCCG 2 cut(s) 282, 306
EcoO109I RGGNCCY 2 cut(s) 149, 842
EcoRII CCWGG 1 cut(s) 354
EcoT14I CCWWGG 3 cut(s) 114, 511, 1032
EcoT38I GRGCYC 1 cut(s) 349
EgeI GGCGCC 1 cut(s) 508
EheI GGCGCC 1 cut(s) 508
ErhI CCWWGG 3 cut(s) 114, 511, 1032
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 5 cut(s) 479, 515, 656, 967, 977
FalI AAGNNNNNCTT 2 cut(s) 245, 277
FaqI GGGAC 2 cut(s) 620, 645
FatI CATG 5 cut(s) 475, 511, 652, 963, 973
Fnu4HI GCNGC 9 cut(s) 99, 285, 306, 442, 489, 537, 555, 1026, 1029
FokI GGATG 2 cut(s) 464, 563
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 9 cut(s) 99, 285, 306, 442, 489, 537, 555, 1026, 1029
FspBI CTAG 3 cut(s) 447, 699, 846
FspI TGCGCA 1 cut(s) 540
GlaI GCGC 3 cut(s) 432, 508, 540
GluI GCNGC 9 cut(s) 99, 285, 306, 442, 489, 537, 555, 1026, 1029
GsuI CTGGAG 1 cut(s) 159
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 6 cut(s) 278, 284, 308, 347, 844, 1031
HhaI GCGC 3 cut(s) 433, 509, 541
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 5 cut(s) 479, 515, 656, 967, 977
Hin6I GCGC 3 cut(s) 431, 507, 539
HinP1I GCGC 3 cut(s) 431, 507, 539
HindIII AAGCTT 2 cut(s) 30, 760
HinfI GANTC 4 cut(s) 77, 137, 982, 996
HphI GGTGA 1 cut(s) 1019
Hpy166II GTNNAC 2 cut(s) 313, 1051
Hpy188I TCNGA 2 cut(s) 336, 465
Hpy188III TCNNGA 8 cut(s) 64, 74, 156, 176, 200, 253, 424, 662
Hpy8I GTNNAC 2 cut(s) 313, 1051
HpyAV CCTTC 2 cut(s) 162, 783
HpyCH4III ACNGT 2 cut(s) 385, 686
HpyCH4IV ACGT 2 cut(s) 594, 797
HpyCH4V TGCA 6 cut(s) 313, 557, 628, 794, 916, 1025
HpyF3I CTNAG 7 cut(s) 198, 298, 462, 582, 587, 807, 992
HpySE526I ACGT 2 cut(s) 594, 797
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 5 cut(s) 479, 515, 656, 967, 977
HspAI GCGC 3 cut(s) 431, 507, 539
KasI GGCGCC 1 cut(s) 506
Kpn2I TCCGGA 1 cut(s) 155
Kzo9I GATC 3 cut(s) 109, 158, 238
LmnI GCTCC 3 cut(s) 4, 178, 775
Lsp1109I GCAGC 4 cut(s) 475, 523, 541, 1037
LweI GCATC 4 cut(s) 79, 541, 685, 1046
MaeI CTAG 3 cut(s) 447, 699, 846
MaeII ACGT 2 cut(s) 594, 797
MaeIII GTNAC 2 cut(s) 680, 904
MalI GATC 3 cut(s) 111, 160, 240
MboI GATC 3 cut(s) 109, 158, 238
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 2 cut(s) 158, 238
MhlI GDGCHC 2 cut(s) 315, 349
MluCI AATT 4 cut(s) 402, 524, 629, 868
Mly113I GGCGCC 1 cut(s) 507
MlyI GAGTC 1 cut(s) 990
MmeI TCCRAC 1 cut(s) 864
MnlI CCTC 8 cut(s) 52, 178, 249, 289, 307, 921, 1003, 1006
MroI TCCGGA 1 cut(s) 155
MseI TTAA 1 cut(s) 867
MslI CAYNNNNRTG 2 cut(s) 393, 516
MspA1I CMGCKG 1 cut(s) 1028
MspR9I CCNGG 5 cut(s) 142, 344, 349, 356, 608
MunI CAATTG 1 cut(s) 524
MvaI CCWGG 1 cut(s) 356
NarI GGCGCC 1 cut(s) 507
NciI CCSGG 4 cut(s) 142, 344, 349, 608
NcoI CCATGG 1 cut(s) 511
NdeII GATC 3 cut(s) 109, 158, 238
NlaIII CATG 5 cut(s) 479, 515, 656, 967, 977
NmeAIII GCCGAG 1 cut(s) 260
NmuCI GTSAC 2 cut(s) 680, 904
NsbI TGCGCA 1 cut(s) 540
PfeI GAWTC 3 cut(s) 77, 137, 982
PinAI ACCGGT 1 cut(s) 674
PkrI GCNGC 9 cut(s) 100, 286, 307, 443, 490, 538, 556, 1027, 1030
PleI GAGTC 1 cut(s) 990
PluTI GGCGCC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 990
Ppu21I YACGTR 1 cut(s) 595
PpuMI RGGWCCY 1 cut(s) 149
PshBI ATTAAT 1 cut(s) 867
PsiI TTATAA 1 cut(s) 758
Psp5II RGGWCCY 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspOMI GGGCCC 1 cut(s) 345
PspPI GGNCC 5 cut(s) 149, 345, 346, 659, 842
PspPPI RGGWCCY 1 cut(s) 149
PsuI RGATCY 2 cut(s) 158, 238
RsaI GTAC 2 cut(s) 437, 597
RsaNI GTAC 2 cut(s) 436, 596
RseI CAYNNNNRTG 2 cut(s) 393, 516
SaqAI TTAA 1 cut(s) 867
SatI GCNGC 9 cut(s) 99, 285, 306, 442, 489, 537, 555, 1026, 1029
Sau3AI GATC 3 cut(s) 109, 158, 238
Sau96I GGNCC 5 cut(s) 149, 345, 346, 659, 842
SchI GAGTC 1 cut(s) 990
ScrFI CCNGG 5 cut(s) 142, 344, 349, 356, 608
SduI GDGCHC 2 cut(s) 315, 349
SfaNI GCATC 4 cut(s) 79, 541, 685, 1046
SfoI GGCGCC 1 cut(s) 508
SinI GGWCC 2 cut(s) 149, 659
SmiMI CAYNNNNRTG 2 cut(s) 393, 516
SmlI CTYRAG 1 cut(s) 422
SmoI CTYRAG 1 cut(s) 422
Sse9I AATT 4 cut(s) 402, 524, 629, 868
SsiI CCGC 7 cut(s) 99, 236, 285, 305, 377, 441, 1028
SspDI GGCGCC 1 cut(s) 506
SspMI CTAG 3 cut(s) 447, 699, 846
StyD4I CCNGG 5 cut(s) 140, 342, 347, 354, 606
StyI CCWWGG 3 cut(s) 114, 511, 1032
TaaI ACNGT 2 cut(s) 385, 686
TaiI ACGT 2 cut(s) 597, 800
TaqI TCGA 5 cut(s) 63, 647, 669, 933, 985
TasI AATT 4 cut(s) 402, 524, 629, 868
TauI GCSGC 5 cut(s) 101, 287, 308, 444, 1031
TfiI GAWTC 3 cut(s) 77, 137, 982
Tru1I TTAA 1 cut(s) 867
Tru9I TTAA 1 cut(s) 867
TscAI CASTG 2 cut(s) 238, 306
TseFI GTSAC 2 cut(s) 680, 904
TseI GCWGC 4 cut(s) 488, 536, 554, 1025
Tsp45I GTSAC 2 cut(s) 680, 904
TspDTI ATGAA 5 cut(s) 42, 253, 377, 464, 591
TspGWI ACGGA 3 cut(s) 70, 71, 219
TspRI CASTG 2 cut(s) 238, 306
VneI GTGCAC 1 cut(s) 311
VpaK11BI GGWCC 2 cut(s) 149, 659
VspI ATTAAT 1 cut(s) 867
XspI CTAG 3 cut(s) 447, 699, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.