Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Reverse (-)

10646222 .. 10648852

Gene Structure 2631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0121000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAGCAGATTGAGAAAGAAGCGATTAAGGAGGCATCAGTGGAGGTATCAAATGAATTCAAAACCCTAATCGATGCCCAGGATTTGGATTCCCTCAAACAACTGCAGCACCTCATATTGGGGAGGTTGCAAGATGGCAACGCGGTCCTGTCACACTTTAATGAAGTTTCAGAGAACTGCTTTGCTGAGGTTTCTGGAGATTTCTCTAAAAACACACGCCTCTTACGGTCTATGAAGTCTGATCTTGAATACATATTTCAGAAGTTAAGGAGCATGAAGTCAAGAATTTTGGCTACCTATCCAGATGCATTTCCAGATGACTCGAAACAAGAAGTACATGACCAAAGACCAGACCTTGAAATGCCACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

123

Amino Acids

14.14

Weight (kDa)

4.82

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KxDL	PF10241	20 - 104	8.5e-25	Uncharacterized conserved protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	85
AccII	CGCG	1 cut(s)	143
AciI	CCGC	1 cut(s)	143
AcsI	RAATTY	2 cut(s)	56, 285
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	2 cut(s)	85, 118
AgsI	TTSAA	3 cut(s)	61, 248, 359
AjnI	CCWGG	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	56, 285
AspS9I	GGNCC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	145
BbvCI	CCTCAGC	1 cut(s)	186
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	1 cut(s)	128
BciT130I	CCWGG	1 cut(s)	80
BfmI	CTRYAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	44, 64, 295
BpmI	CTGGAG	1 cut(s)	216
Bpu10I	CCTNAGC	1 cut(s)	186
Bsa29I	ATCGAT	1 cut(s)	72
BsaJI	CCNNGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	85, 118
BseBI	CCWGG	1 cut(s)	80
BseCI	ATCGAT	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	85, 118
BseMII	CTCAG	1 cut(s)	177
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	72
BslI	CCNNNNNNNGG	2 cut(s)	85, 118
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	178
BspDI	ATCGAT	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	143
BspMAI	CTGCAG	1 cut(s)	108
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	241
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	228, 369
BstDEI	CTNAG	1 cut(s)	186
BstFNI	CGCG	1 cut(s)	143
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSFI	CTRYAG	1 cut(s)	104
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	118
Bsu15I	ATCGAT	1 cut(s)	72
BsuTUI	ATCGAT	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	45, 365
Cfr13I	GGNCC	1 cut(s)	145
ClaI	ATCGAT	1 cut(s)	72
Csp6I	GTAC	1 cut(s)	335
CviAII	CATG	2 cut(s)	274, 338
CviJI	RGCY	1 cut(s)	293
CviKI_1	RGCY	1 cut(s)	293
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	145
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	310
FaeI	CATG	2 cut(s)	277, 341
FaiI	YATR	5 cut(s)	116, 233, 254, 275, 339
FatI	CATG	2 cut(s)	273, 337
Fnu4HI	GCNGC	1 cut(s)	107
Fsp4HI	GCNGC	1 cut(s)	107
GluI	GCNGC	1 cut(s)	107
GsuI	CTGGAG	1 cut(s)	216
Hin1II	CATG	2 cut(s)	277, 341
HinfI	GANTC	2 cut(s)	89, 320
Hpy188I	TCNGA	3 cut(s)	172, 241, 261
Hpy188III	TCNNGA	5 cut(s)	195, 245, 282, 302, 314
HpyCH4III	ACNGT	2 cut(s)	228, 369
HpyCH4V	TGCA	3 cut(s)	106, 130, 308
HpyF3I	CTNAG	1 cut(s)	186
Hsp92II	CATG	2 cut(s)	277, 341
Kzo9I	GATC	1 cut(s)	241
LmnI	GCTCC	2 cut(s)	4, 270
LpnPI	CCDG	7 cut(s)	65, 92, 161, 180, 315, 327, 363
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	3 cut(s)	44, 64, 295
MaeIII	GTNAC	1 cut(s)	150
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MluCI	AATT	2 cut(s)	56, 285
MlyI	GAGTC	1 cut(s)	314
MnlI	CCTC	7 cut(s)	25, 37, 104, 117, 122, 181, 230
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	3 cut(s)	27, 159, 266
MslI	CAYNNNNRTG	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	143
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	277, 341
NmuCI	GTSAC	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	145
PstI	CTGCAG	1 cut(s)	108
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	3 cut(s)	27, 159, 266
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	1 cut(s)	241
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	6 cut(s)	48, 114, 128, 192, 299, 357
SfaNI	GCATC	3 cut(s)	44, 64, 295
SfcI	CTRYAG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	159
Sse9I	AATT	2 cut(s)	56, 285
SsiI	CCGC	1 cut(s)	143
StyD4I	CCNGG	1 cut(s)	78
TaaI	ACNGT	2 cut(s)	228, 369
TaqI	TCGA	2 cut(s)	72, 323
TasI	AATT	2 cut(s)	56, 285
TatI	WGTACW	1 cut(s)	334
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	27, 159, 266
Tru9I	TTAA	3 cut(s)	27, 159, 266
TscAI	CASTG	2 cut(s)	45, 372
TseFI	GTSAC	1 cut(s)	150
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	150
TspDTI	ATGAA	4 cut(s)	69, 177, 248, 290
TspRI	CASTG	2 cut(s)	45, 372
Van91I	CCANNNNNTGG	1 cut(s)	85
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	2 cut(s)	56, 285
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.