Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Reverse (-)

26274537 .. 26280395

Gene Structure 5859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG221700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGACGTGTATTCTTGAAGGCTTGAAGGCTGGGTTCGATTTCGGATTTCTGGTTACTGATATGATCATGACTCTCACACCTCCATCGTTATGCTCCTGCGATGGAACAGATTGTGGTCCCAATCTTAAGTCAGAAATTATCAACCAGCGGATTAATGTGCATTCTCCTGATATTCAAGAAATAGTGTACCAGAATTATGTTACCAAGGAATCTTCAAACTATTTGTTGGACTCCATTCAACCACTGCACGGACTTTACAAACTCAAGGTACTTGTTTTATCTGGTCATGATCATGATCAGTGTGATGTTGTCCACAAGCCAAAATATGGGCTTGTGAAGGAGAGTAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

5.36

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	1 cut(s)	148
AfaI	GTAC	2 cut(s)	188, 270
AfiI	CCNNNNNNNGG	2 cut(s)	248, 326
AflII	CTTAAG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	5 cut(s)	17, 25, 176, 216, 239
AjiI	CACGTC	1 cut(s)	6
AseI	ATTAAT	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	116
BccI	CCATC	2 cut(s)	91, 95
BclI	TGATCA	3 cut(s)	63, 289, 295
BfmI	CTRYAG	1 cut(s)	350
BfrI	CTTAAG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	116
BmgBI	CACGTC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	248
BsaBI	GATNNNNATC	1 cut(s)	294
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	248, 326
Bse8I	GATNNNNATC	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	248, 326
BseYI	CCCAGC	1 cut(s)	29
BsgI	GTGCAG	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	2 cut(s)	248, 326
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	160
Bsp143I	GATC	3 cut(s)	63, 289, 295
BspACI	CCGC	1 cut(s)	148
BspHI	TCATGA	3 cut(s)	66, 286, 292
BspLI	GGNNCC	1 cut(s)	118
BspTI	CTTAAG	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	3 cut(s)	63, 289, 295
BssT1I	CCWWGG	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	125
BstKTI	GATC	3 cut(s)	66, 292, 298
BstMBI	GATC	3 cut(s)	63, 289, 295
BstSFI	CTRYAG	1 cut(s)	350
BtgZI	GCGATG	1 cut(s)	114
BtrI	CACGTC	1 cut(s)	6
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	242, 305
CciI	TCATGA	3 cut(s)	66, 286, 292
Cfr13I	GGNCC	1 cut(s)	116
Csp6I	GTAC	2 cut(s)	187, 269
CviAII	CATG	3 cut(s)	67, 287, 293
CviJI	RGCY	4 cut(s)	21, 29, 319, 331
CviKI_1	RGCY	4 cut(s)	21, 29, 319, 331
CviQI	GTAC	2 cut(s)	187, 269
DpnI	GATC	3 cut(s)	65, 291, 297
DpnII	GATC	3 cut(s)	63, 289, 295
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	116
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	3 cut(s)	70, 290, 296
FaiI	YATR	7 cut(s)	62, 68, 91, 198, 288, 294, 327
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	3 cut(s)	66, 286, 292
FbaI	TGATCA	3 cut(s)	63, 289, 295
GsaI	CCCAGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	70, 290, 296
HinfI	GANTC	3 cut(s)	70, 209, 230
Hpy166II	GTNNAC	2 cut(s)	187, 313
Hpy188I	TCNGA	2 cut(s)	44, 133
Hpy188III	TCNNGA	6 cut(s)	14, 67, 167, 176, 287, 293
Hpy8I	GTNNAC	2 cut(s)	187, 313
HpyAV	CCTTC	3 cut(s)	11, 19, 331
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	160, 247
HpySE526I	ACGT	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	70, 290, 296
Ksp22I	TGATCA	3 cut(s)	63, 289, 295
Kzo9I	GATC	3 cut(s)	63, 289, 295
LmnI	GCTCC	1 cut(s)	98
LpnPI	CCDG	7 cut(s)	15, 35, 109, 158, 180, 203, 267
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	2 cut(s)	52, 199
MalI	GATC	3 cut(s)	65, 291, 297
MboI	GATC	3 cut(s)	63, 289, 295
MboII	GAAGA	1 cut(s)	204
MluCI	AATT	2 cut(s)	135, 193
MlyI	GAGTC	2 cut(s)	64, 224
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	1 cut(s)	90
MseI	TTAA	2 cut(s)	126, 153
MslI	CAYNNNNRTG	2 cut(s)	88, 291
MspA1I	CMGCKG	1 cut(s)	148
MspCI	CTTAAG	1 cut(s)	125
Mva1269I	GAATGC	1 cut(s)	160
NdeII	GATC	3 cut(s)	63, 289, 295
NlaIII	CATG	3 cut(s)	70, 290, 296
NlaIV	GGNNCC	1 cut(s)	118
PagI	TCATGA	3 cut(s)	66, 286, 292
PctI	GAATGC	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	326
PleI	GAGTC	2 cut(s)	64, 224
PpsI	GAGTC	2 cut(s)	64, 224
PshBI	ATTAAT	1 cut(s)	153
PspFI	CCCAGC	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	118
PspPI	GGNCC	1 cut(s)	116
RsaI	GTAC	2 cut(s)	188, 270
RsaNI	GTAC	2 cut(s)	187, 269
RseI	CAYNNNNRTG	2 cut(s)	88, 291
SaqAI	TTAA	2 cut(s)	126, 153
Sau3AI	GATC	3 cut(s)	63, 289, 295
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	2 cut(s)	64, 224
SetI	ASST	3 cut(s)	8, 82, 270
SfcI	CTRYAG	1 cut(s)	350
SinI	GGWCC	1 cut(s)	116
SmiMI	CAYNNNNRTG	2 cut(s)	88, 291
SmlI	CTYRAG	2 cut(s)	125, 263
SmoI	CTYRAG	2 cut(s)	125, 263
Sse9I	AATT	2 cut(s)	135, 193
SsiI	CCGC	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	1 cut(s)	36
TasI	AATT	2 cut(s)	135, 193
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	126, 153
Tru9I	TTAA	2 cut(s)	126, 153
TscAI	CASTG	2 cut(s)	249, 305
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	249, 305
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	125
VpaK11BI	GGWCC	1 cut(s)	116
VspI	ATTAAT	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.