Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8220218.1

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 589

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8220218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 314 bp

aaggatcaatgcaacttgtcaagaaaatttcaaacgttgctgttaccagcaaaagtgagacaagctcagttgaaagaggtactgctgtgatgcggccgacagctataaagaatatttctcaggagttagaggtttctgtgaatgccgatgccgatgcgtttgatcctatggcaaagacactttctagagcaagtaaatcttggacaaagttggtaatccaaagattggtccggacatttcgaatggtcacaatcatcgctgctgtaaatgtgcccatttatatgttgttacttttcaaggattggattgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

103

Amino Acids

11.43

Weight (kDa)

9.89

Isoelectric Point (pI)

22.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	230
AciI	CCGC	1 cut(s)	93
AclI	AACGTT	1 cut(s)	35
AclWI	GGATC	2 cut(s)	12, 157
AcoI	YGGCCR	1 cut(s)	94
AcsI	RAATTY	1 cut(s)	26
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	32, 73, 297
AluBI	AGCT	2 cut(s)	65, 103
AluI	AGCT	2 cut(s)	65, 103
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	2 cut(s)	12, 157
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	228
AsuII	TTCGAA	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	228
BaeGI	GKGCMC	1 cut(s)	275
BaeI	ACNNNNGTAYC	2 cut(s)	71, 104
BbvI	GCAGC	1 cut(s)	246
BcgI	CGANNNNNNTGC	2 cut(s)	136, 170
BcoDI	GTCTC	1 cut(s)	52
BfaI	CTAG	1 cut(s)	185
BisI	GCNGC	2 cut(s)	94, 260
BlsI	GCNGC	2 cut(s)	95, 261
Bme18I	GGWCC	1 cut(s)	228
BmgT120I	GGNCC	1 cut(s)	228
BmsI	GCATC	3 cut(s)	80, 138, 144
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
Bpu14I	TTCGAA	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
BseAI	TCCGGA	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	80, 133
BseSI	GKGCMC	1 cut(s)	275
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	97
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	52
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	1 cut(s)	96
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	4, 162
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	2 cut(s)	79, 132
BspEI	TCCGGA	1 cut(s)	230
BspPI	GGATC	2 cut(s)	12, 157
BspT104I	TTCGAA	1 cut(s)	240
BssMI	GATC	2 cut(s)	4, 162
BstBI	TTCGAA	1 cut(s)	240
BstDEI	CTNAG	2 cut(s)	66, 119
BstKTI	GATC	2 cut(s)	7, 165
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	2 cut(s)	4, 162
BstMCI	CGRYCG	1 cut(s)	97
BstSLI	GKGCMC	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	94
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	240
Cfr13I	GGNCC	1 cut(s)	228
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	3 cut(s)	65, 96, 103
CviKI_1	RGCY	3 cut(s)	65, 96, 103
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	66, 119
DpnI	GATC	2 cut(s)	6, 164
DpnII	GATC	2 cut(s)	4, 162
EaeI	YGGCCR	1 cut(s)	94
EagI	CGGCCG	1 cut(s)	94
EclXI	CGGCCG	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	228
Eco52I	CGGCCG	1 cut(s)	94
FaiI	YATR	4 cut(s)	106, 169, 281, 283
FalI	AAGNNNNNCTT	2 cut(s)	183, 215
Fnu4HI	GCNGC	2 cut(s)	94, 260
Fsp4HI	GCNGC	2 cut(s)	94, 260
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	2 cut(s)	94, 260
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	231
HpaII	CCGG	1 cut(s)	231
Hpy188III	TCNNGA	4 cut(s)	21, 121, 185, 231
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	12
HpyF3I	CTNAG	2 cut(s)	66, 119
HpySE526I	ACGT	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	2 cut(s)	4, 162
LpnPI	CCDG	3 cut(s)	60, 106, 244
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	3 cut(s)	80, 138, 144
MaeI	CTAG	1 cut(s)	185
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	3 cut(s)	42, 246, 287
MalI	GATC	2 cut(s)	6, 164
MboI	GATC	2 cut(s)	4, 162
MhlI	GDGCHC	1 cut(s)	275
MluCI	AATT	1 cut(s)	26
MnlI	CCTC	2 cut(s)	70, 123
MroI	TCCGGA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	280
MspI	CCGG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	147
NdeII	GATC	2 cut(s)	4, 162
NmuCI	GTSAC	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	240
PctI	GAATGC	1 cut(s)	147
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	95, 261
Psp1406I	AACGTT	1 cut(s)	35
PspPI	GGNCC	1 cut(s)	228
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	280
SatI	GCNGC	2 cut(s)	94, 260
Sau3AI	GATC	2 cut(s)	4, 162
Sau96I	GGNCC	1 cut(s)	228
SduI	GDGCHC	1 cut(s)	275
SetI	ASST	5 cut(s)	38, 67, 81, 105, 134
SfaNI	GCATC	3 cut(s)	80, 138, 144
SfuI	TTCGAA	1 cut(s)	240
SinI	GGWCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	280
Sse9I	AATT	1 cut(s)	26
SsiI	CCGC	1 cut(s)	93
SspI	AATATT	1 cut(s)	114
SspMI	CTAG	1 cut(s)	185
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	240
TasI	AATT	1 cut(s)	26
TauI	GCSGC	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	246
Van91I	CCANNNNNTGG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	228
XapI	RAATTY	1 cut(s)	26
XbaI	TCTAGA	1 cut(s)	184
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.