Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001983.1

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Forward (+)

19919 .. 22435

Gene Structure 2517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001983.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ctgacggcggtaactgtgacctcaagagtcaaggctcaagcagagttctggattcttgaaggcttgaaggctgggttcgatttcggatttctggttactgatatgatcatgactctcacacctccatcgttatgctcctgcgatggaacagattgtggtcccaatcttaagtcagaaattatcaaccagcggattaatgtgcattctcctgatattcaagaaatagtgtaccagaattacgttaccaaggaatcttcaaactatttgttggactccattcaaccagtacttgttttatctggtcatgatcatgatcagtgtgatgttgtccacaagccaaaatatgggcttgtgaaggaggtatggcactttgttttgacccttcttgccctcctgctttggccagctggtggtgtgagtttttggcatcattttagtgatctaatggcgtgtggcaaacaagaagtaaaaggatataatttcaaagtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

163

Amino Acids

18.27

Weight (kDa)

5.73

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	344, 410
AciI	CCGC	2 cut(s)	8, 190
AcoI	YGGCCR	1 cut(s)	401
AfaI	GTAC	2 cut(s)	230, 288
AfiI	CCNNNNNNNGG	2 cut(s)	344, 410
AflII	CTTAAG	1 cut(s)	167
AgsI	TTSAA	6 cut(s)	59, 67, 218, 258, 281, 484
AluBI	AGCT	1 cut(s)	407
AluI	AGCT	1 cut(s)	407
AoxI	GGCC	1 cut(s)	401
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	403
BccI	CCATC	2 cut(s)	133, 137
BceAI	ACGGC	1 cut(s)	21
BclI	TGATCA	3 cut(s)	105, 307, 313
BfrI	CTTAAG	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	160
BmsI	GCATC	1 cut(s)	436
BpuEI	CTTGAG	2 cut(s)	7, 21
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	344, 410
Bse1I	ACTGG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	312
BseDI	CCNNGG	1 cut(s)	246
BseJI	GATNNNNATC	1 cut(s)	312
BseLI	CCNNNNNNNGG	2 cut(s)	344, 410
BseNI	ACTGG	1 cut(s)	284
BseYI	CCCAGC	1 cut(s)	71
BshFI	GGCC	1 cut(s)	403
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	344, 410
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	105, 307, 313, 439
BspACI	CCGC	2 cut(s)	8, 190
BspANI	GGCC	1 cut(s)	403
BspHI	TCATGA	3 cut(s)	108, 304, 310
BspLI	GGNNCC	1 cut(s)	160
BspTI	CTTAAG	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	4 cut(s)	105, 307, 313, 439
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	1 cut(s)	16
BstAFI	CTTAAG	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	405
BstKTI	GATC	4 cut(s)	108, 310, 316, 442
BstMBI	GATC	4 cut(s)	105, 307, 313, 439
BsuRI	GGCC	1 cut(s)	403
BtgZI	GCGATG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	323
Cac8I	GCNNGC	1 cut(s)	405
CciI	TCATGA	3 cut(s)	108, 304, 310
Cfr13I	GGNCC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	229, 287
CviAII	CATG	3 cut(s)	109, 305, 311
CviJI	RGCY	7 cut(s)	35, 63, 71, 337, 349, 403, 407
CviKI_1	RGCY	7 cut(s)	35, 63, 71, 337, 349, 403, 407
CviQI	GTAC	2 cut(s)	229, 287
DpnI	GATC	4 cut(s)	107, 309, 315, 441
DpnII	GATC	4 cut(s)	105, 307, 313, 439
EaeI	YGGCCR	1 cut(s)	401
Eco130I	CCWWGG	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	158
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	3 cut(s)	112, 308, 314
FaiI	YATR	9 cut(s)	104, 110, 133, 306, 312, 345, 364, 477, 490
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	108, 304, 310
FbaI	TGATCA	3 cut(s)	105, 307, 313
GsaI	CCCAGC	1 cut(s)	75
HaeIII	GGCC	1 cut(s)	403
Hin1II	CATG	3 cut(s)	112, 308, 314
HinfI	GANTC	5 cut(s)	27, 52, 112, 251, 272
Hpy166II	GTNNAC	2 cut(s)	229, 331
Hpy188I	TCNGA	2 cut(s)	86, 175
Hpy188III	TCNNGA	8 cut(s)	24, 49, 56, 109, 209, 218, 305, 311
Hpy8I	GTNNAC	2 cut(s)	229, 331
HpyAV	CCTTC	4 cut(s)	53, 61, 349, 392
HpyCH4III	ACNGT	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	1 cut(s)	202
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	112, 308, 314
Ksp22I	TGATCA	3 cut(s)	105, 307, 313
Kzo9I	GATC	4 cut(s)	105, 307, 313, 439
LmnI	GCTCC	1 cut(s)	140
LweI	GCATC	1 cut(s)	436
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	4 cut(s)	10, 16, 94, 241
MalI	GATC	4 cut(s)	107, 309, 315, 441
MboI	GATC	4 cut(s)	105, 307, 313, 439
MboII	GAAGA	1 cut(s)	246
MlsI	TGGCCA	1 cut(s)	403
MluCI	AATT	3 cut(s)	177, 235, 478
MluNI	TGGCCA	1 cut(s)	403
MlyI	GAGTC	3 cut(s)	36, 106, 266
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	31, 132, 352, 401
Mox20I	TGGCCA	1 cut(s)	403
MscI	TGGCCA	1 cut(s)	403
MseI	TTAA	2 cut(s)	168, 195
MslI	CAYNNNNRTG	3 cut(s)	130, 309, 435
Msp20I	TGGCCA	1 cut(s)	403
MspA1I	CMGCKG	2 cut(s)	190, 407
MspCI	CTTAAG	1 cut(s)	167
Mva1269I	GAATGC	1 cut(s)	202
NdeII	GATC	4 cut(s)	105, 307, 313, 439
NlaIII	CATG	3 cut(s)	112, 308, 314
NlaIV	GGNNCC	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	16
PagI	TCATGA	3 cut(s)	108, 304, 310
PctI	GAATGC	1 cut(s)	202
PfeI	GAWTC	2 cut(s)	52, 251
PflMI	CCANNNNNTGG	2 cut(s)	344, 410
PleI	GAGTC	3 cut(s)	35, 106, 266
PpsI	GAGTC	3 cut(s)	35, 106, 266
PshBI	ATTAAT	1 cut(s)	195
PspFI	CCCAGC	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	160
PspPI	GGNCC	1 cut(s)	158
PvuII	CAGCTG	1 cut(s)	407
RsaI	GTAC	2 cut(s)	230, 288
RsaNI	GTAC	2 cut(s)	229, 287
RseI	CAYNNNNRTG	3 cut(s)	130, 309, 435
SaqAI	TTAA	2 cut(s)	168, 195
Sau3AI	GATC	4 cut(s)	105, 307, 313, 439
Sau96I	GGNCC	1 cut(s)	158
ScaI	AGTACT	1 cut(s)	288
SchI	GAGTC	3 cut(s)	36, 106, 266
SetI	ASST	5 cut(s)	23, 124, 243, 363, 409
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	158
SmiMI	CAYNNNNRTG	3 cut(s)	130, 309, 435
SmlI	CTYRAG	3 cut(s)	22, 36, 167
SmoI	CTYRAG	3 cut(s)	22, 36, 167
Sse9I	AATT	3 cut(s)	177, 235, 478
SsiI	CCGC	2 cut(s)	8, 190
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	16
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	78
TasI	AATT	3 cut(s)	177, 235, 478
TatI	WGTACW	1 cut(s)	286
TfiI	GAWTC	2 cut(s)	52, 251
Tru1I	TTAA	2 cut(s)	168, 195
Tru9I	TTAA	2 cut(s)	168, 195
TscAI	CASTG	1 cut(s)	323
TseFI	GTSAC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	16
TspRI	CASTG	1 cut(s)	323
Van91I	CCANNNNNTGG	2 cut(s)	344, 410
Vha464I	CTTAAG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	195
ZrmI	AGTACT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.