Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Reverse (-)

14933002 .. 14935397

Gene Structure 2396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1156100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGCGCAGAGCGTTTCACCAATTTGTACTTCCTCTCTGGCCCGATGTGATTTTCATTTTGGGTGATTATTTTGACGGCGGTCCTTATCTTTCAGATGAAGAGTGGAATGAGTCGTTAATCCGTCTGAGACATATTTTTTCTCTGAGGGTGCGAGACAGATATTTAAATATCCTAGTTTACTACCTTCCTGGAAACCATGACATTGGCTATGGAGTTCTCCACTCTCGTATGGAAAAGAAACCATATACAAAAGATCAACGAACATATTCCATTAATTCATTTATAGATGTTCAAGCGTATCCAAGGGTTTTATTGACCCATATTCGATTGGATCGAAGAGATTGGACAGATTGTAATGGCTTTTCAGATGTTGAGTTTATTTGGATAGTAAGTCGGCAGCAGGGAAACTTGTATCCGTCTTTCATGTTATTGTCTGCTAGTAATTTTGTACCTTCAAATGCATCCAGTTCTGAAGAGGCAATCTCAACTTATCCGTGCTTTCTTCCAATGCAATCACACATTTATTTATGGTATCTATCACTATTTGTTTTTACCCTTGTTTCTCTCCTGCTTTGGCCATATAGTGGTGTGAGTGTTTGGCATCATTGTAGTGATTTGATGGGGATTGTAAAACAAGTAATCAGTAGCATCAGAAGTCGAACAAAAGAGAAAATTGAATATCTAAACTGTGTATATGAGATGATTTGGGATGCAGAAGGCATCTTAGGTAATGCTGTGCTGCAGTCCGCAGCTAGAAAGAATATTTCCCAGGACATAGAGGTTTCTGTGAATGGAGACTCTGATGCGGATTCTGTGGTTGATCCATTGGCAAAGTTACTGCCTAGAGCAAGCAGATCAAGGAAAAAGACGGTGACCAGAAGATTGGTGCAGACATTACTAATGGTCATGATCATCGCTGCAGTAAATGTACCCCTCTATGTGATGTTACTTTTCAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

321

Amino Acids

37.07

Weight (kDa)

7.7

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	3 - 111	3.4e-08	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	584
AciI	CCGC	3 cut(s)	78, 747, 806
AclWI	GGATC	2 cut(s)	339, 815
AcoI	YGGCCR	1 cut(s)	575
AcuI	CTGAAG	1 cut(s)	492
AfaI	GTAC	3 cut(s)	27, 450, 930
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	4 cut(s)	293, 456, 677, 955
AjnI	CCWGG	2 cut(s)	187, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	12, 44
AluBI	AGCT	1 cut(s)	752
AluI	AGCT	1 cut(s)	752
Alw26I	GTCTC	3 cut(s)	121, 147, 789
AlwI	GGATC	2 cut(s)	339, 815
AoxI	GGCC	2 cut(s)	38, 575
ApeKI	GCWGC	4 cut(s)	397, 739, 749, 917
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	2 cut(s)	39, 80
AsuHPI	GGTGA	3 cut(s)	8, 74, 883
AvaII	GGWCC	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	577
BbvI	GCAGC	4 cut(s)	409, 726, 761, 904
BccI	CCATC	1 cut(s)	613
BceAI	ACGGC	1 cut(s)	91
BciT130I	CCWGG	2 cut(s)	189, 770
BciVI	GTATCC	2 cut(s)	309, 423
BclI	TGATCA	1 cut(s)	909
BcoDI	GTCTC	3 cut(s)	121, 147, 789
BfaI	CTAG	4 cut(s)	173, 438, 753, 843
BfmI	CTRYAG	2 cut(s)	740, 918
BfuI	GTATCC	2 cut(s)	309, 423
BisI	GCNGC	4 cut(s)	398, 740, 750, 918
BlsI	GCNGC	4 cut(s)	399, 741, 751, 919
Bme1390I	CCNGG	2 cut(s)	189, 770
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	39, 80
BmrFI	CCNGG	2 cut(s)	189, 770
BmsI	GCATC	6 cut(s)	470, 610, 657, 700, 729, 793
BoxI	GACNNNNGTC	1 cut(s)	78
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BsaJI	CCNNGG	2 cut(s)	302, 768
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	1 cut(s)	465
BseBI	CCWGG	2 cut(s)	189, 770
BseDI	CCNNGG	2 cut(s)	302, 768
BseGI	GGATG	2 cut(s)	461, 715
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	116, 134
BseNI	ACTGG	1 cut(s)	465
BseXI	GCAGC	4 cut(s)	409, 726, 761, 904
BsgI	GTGCAG	1 cut(s)	908
BshFI	GGCC	2 cut(s)	40, 577
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmAI	GTCTC	3 cut(s)	121, 147, 789
BsnI	GGCC	2 cut(s)	40, 577
Bsp143I	GATC	5 cut(s)	253, 331, 820, 854, 909
BspACI	CCGC	3 cut(s)	78, 747, 806
BspANI	GGCC	2 cut(s)	40, 577
BspCNI	CTCAG	2 cut(s)	117, 135
BspHI	TCATGA	1 cut(s)	906
BspMAI	CTGCAG	2 cut(s)	744, 922
BspPI	GGATC	2 cut(s)	339, 815
BsrI	ACTGG	1 cut(s)	465
BssECI	CCNNGG	2 cut(s)	302, 768
BssMI	GATC	5 cut(s)	253, 331, 820, 854, 909
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	189, 770
Bst4CI	ACNGT	2 cut(s)	689, 871
Bst6I	CTCTTC	3 cut(s)	93, 331, 468
BstC8I	GCNNGC	1 cut(s)	850
BstDEI	CTNAG	3 cut(s)	125, 143, 724
BstEII	GGTNACC	1 cut(s)	871
BstF5I	GGATG	2 cut(s)	461, 715
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	5 cut(s)	256, 334, 823, 857, 912
BstMAI	GTCTC	3 cut(s)	121, 147, 789
BstMBI	GATC	5 cut(s)	253, 331, 820, 854, 909
BstNI	CCWGG	2 cut(s)	189, 770
BstPAI	GACNNNNGTC	1 cut(s)	78
BstPI	GGTNACC	1 cut(s)	871
BstSCI	CCNGG	2 cut(s)	187, 768
BstSFI	CTRYAG	2 cut(s)	740, 918
BstV1I	GCAGC	4 cut(s)	409, 726, 761, 904
BstXI	CCANNNNNNTGG	2 cut(s)	203, 883
BsuI	GTATCC	2 cut(s)	309, 423
BsuRI	GGCC	2 cut(s)	40, 577
BtgZI	GCGATG	1 cut(s)	898
BtsCI	GGATG	2 cut(s)	461, 715
Cac8I	GCNNGC	1 cut(s)	850
CciI	TCATGA	1 cut(s)	906
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	39, 80
Csp6I	GTAC	3 cut(s)	26, 449, 929
CviAII	CATG	3 cut(s)	197, 424, 907
CviJI	RGCY	5 cut(s)	40, 207, 360, 577, 752
CviKI_1	RGCY	5 cut(s)	40, 207, 360, 577, 752
CviQI	GTAC	3 cut(s)	26, 449, 929
DdeI	CTNAG	3 cut(s)	125, 143, 724
DpnI	GATC	5 cut(s)	255, 333, 822, 856, 911
DpnII	GATC	5 cut(s)	253, 331, 820, 854, 909
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	575
Eam1104I	CTCTTC	3 cut(s)	93, 331, 468
EarI	CTCTTC	3 cut(s)	93, 331, 468
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	1 cut(s)	492
Eco91I	GGTNACC	1 cut(s)	871
EcoO65I	GGTNACC	1 cut(s)	871
EcoRII	CCWGG	2 cut(s)	187, 768
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	3 cut(s)	200, 427, 910
FatI	CATG	3 cut(s)	196, 423, 906
FbaI	TGATCA	1 cut(s)	909
Fnu4HI	GCNGC	4 cut(s)	398, 740, 750, 918
FokI	GGATG	2 cut(s)	448, 722
Fsp4HI	GCNGC	4 cut(s)	398, 740, 750, 918
FspBI	CTAG	4 cut(s)	173, 438, 753, 843
FspI	TGCGCA	1 cut(s)	5
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	4 cut(s)	398, 740, 750, 918
HaeIII	GGCC	2 cut(s)	40, 577
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	3 cut(s)	200, 427, 910
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HinfI	GANTC	3 cut(s)	110, 797, 809
HphI	GGTGA	3 cut(s)	8, 74, 883
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	7 cut(s)	94, 126, 144, 367, 472, 653, 802
Hpy188III	TCNNGA	1 cut(s)	907
Hpy8I	GTNNAC	1 cut(s)	178
HpyAV	CCTTC	3 cut(s)	194, 462, 710
HpyCH4III	ACNGT	2 cut(s)	689, 871
HpyCH4V	TGCA	6 cut(s)	461, 511, 713, 742, 889, 920
HpyF3I	CTNAG	3 cut(s)	125, 143, 724
Hsp92II	CATG	3 cut(s)	200, 427, 910
HspAI	GCGC	1 cut(s)	4
Ksp22I	TGATCA	1 cut(s)	909
Kzo9I	GATC	5 cut(s)	253, 331, 820, 854, 909
LpnPI	CCDG	9 cut(s)	22, 174, 201, 386, 478, 581, 755, 782, 889
Lsp1109I	GCAGC	4 cut(s)	409, 726, 761, 904
LweI	GCATC	6 cut(s)	470, 610, 657, 700, 729, 793
MaeI	CTAG	4 cut(s)	173, 438, 753, 843
MaeIII	GTNAC	3 cut(s)	834, 871, 945
MalI	GATC	5 cut(s)	255, 333, 822, 856, 911
MboI	GATC	5 cut(s)	253, 331, 820, 854, 909
MboII	GAAGA	5 cut(s)	110, 348, 485, 494, 891
MlsI	TGGCCA	1 cut(s)	577
MluCI	AATT	4 cut(s)	20, 274, 442, 672
MluNI	TGGCCA	1 cut(s)	577
MlyI	GAGTC	2 cut(s)	119, 791
MnlI	CCTC	5 cut(s)	42, 138, 469, 772, 944
Mox20I	TGGCCA	1 cut(s)	577
Mph1103I	ATGCAT	1 cut(s)	463
MroXI	GAANNNNTTC	1 cut(s)	265
MscI	TGGCCA	1 cut(s)	577
MseI	TTAA	3 cut(s)	116, 164, 273
MslI	CAYNNNNRTG	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	577
MspR9I	CCNGG	2 cut(s)	189, 770
MvaI	CCWGG	2 cut(s)	189, 770
NdeII	GATC	5 cut(s)	253, 331, 820, 854, 909
NlaIII	CATG	3 cut(s)	200, 427, 910
NmuCI	GTSAC	1 cut(s)	871
NsbI	TGCGCA	1 cut(s)	5
NsiI	ATGCAT	1 cut(s)	463
PagI	TCATGA	1 cut(s)	906
PcsI	WCGNNNNNNNCGW	1 cut(s)	331
PdmI	GAANNNNTTC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	809
PflMI	CCANNNNNTGG	1 cut(s)	584
PfoI	TCCNGGA	1 cut(s)	187
PkrI	GCNGC	4 cut(s)	399, 741, 751, 919
PleI	GAGTC	2 cut(s)	118, 791
PpsI	GAGTC	2 cut(s)	118, 791
PshAI	GACNNNNGTC	1 cut(s)	78
PshBI	ATTAAT	1 cut(s)	273
Psp6I	CCWGG	2 cut(s)	187, 768
PspEI	GGTNACC	1 cut(s)	871
PspGI	CCWGG	2 cut(s)	187, 768
PspPI	GGNCC	2 cut(s)	39, 80
PstI	CTGCAG	2 cut(s)	744, 922
RsaI	GTAC	3 cut(s)	27, 450, 930
RsaNI	GTAC	3 cut(s)	26, 449, 929
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	116, 164, 273
SatI	GCNGC	4 cut(s)	398, 740, 750, 918
Sau3AI	GATC	5 cut(s)	253, 331, 820, 854, 909
Sau96I	GGNCC	2 cut(s)	39, 80
SchI	GAGTC	2 cut(s)	119, 791
ScrFI	CCNGG	2 cut(s)	189, 770
SetI	ASST	5 cut(s)	186, 454, 730, 754, 783
SfaNI	GCATC	6 cut(s)	470, 610, 657, 700, 729, 793
SfcI	CTRYAG	2 cut(s)	740, 918
SinI	GGWCC	1 cut(s)	80
SmiI	ATTTAAAT	1 cut(s)	165
SmiMI	CAYNNNNRTG	1 cut(s)	609
Sse9I	AATT	4 cut(s)	20, 274, 442, 672
SsiI	CCGC	3 cut(s)	78, 747, 806
SspI	AATATT	1 cut(s)	763
SspMI	CTAG	4 cut(s)	173, 438, 753, 843
StyD4I	CCNGG	2 cut(s)	187, 768
StyI	CCWWGG	1 cut(s)	302
SwaI	ATTTAAAT	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	689, 871
TaqI	TCGA	3 cut(s)	325, 334, 658
TasI	AATT	4 cut(s)	20, 274, 442, 672
TatI	WGTACW	1 cut(s)	25
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	3 cut(s)	116, 164, 273
Tru9I	TTAA	3 cut(s)	116, 164, 273
TseFI	GTSAC	1 cut(s)	871
TseI	GCWGC	4 cut(s)	397, 739, 749, 917
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	4 cut(s)	43, 111, 267, 412
TspGWI	ACGGA	3 cut(s)	110, 405, 483
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	80
VspI	ATTAAT	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	265
XspI	CTAG	4 cut(s)	173, 438, 753, 843
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.