Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029680.1

Orthogroup ID

OG0003814

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 723

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029680.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 499 bp

gtatctgtcactatttgttttgacccttcttgccctcctgctttggccaactggtggtgtgagtttttggcatcattttagtgatctaatggcgtttggcaaacaactaataagtagcattacaagtagaccaaaagagaaagatgaagatctaaactgtgagtatgagatgatgtgggatgcagaaggatcaatgcaacttgtcaagaaaatttcaaacgttgctgttaccagcaaaagtgagacaagctcagttgaaagaggtactgctgtgatgcggccgacagctataaagaatatttctcaggagttagaggtttctgtgaatgccgatgccgatgcgtttgatcctatggcaaagacactttctagagcaagtaaatcttggacaaagttggtaatccaaagattggtccggacatttcgaatggtcacaatcatcgctgctgtaaatgtgcccatttatatgttgttacttttcaaggattggattgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006281 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006888 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016192 GO:0019538 GO:0019637 GO:0033554 GO:0034641 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046483 GO:0046486 GO:0046488 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051716 GO:0071704 GO:0090304 GO:0090407 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos

Protein Analysis

165

Amino Acids

18.64

Weight (kDa)

6.95

Isoelectric Point (pI)

25.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003814)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53710 AT1G53710
fragaria_vesca	FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250 FvH4_6g36250
malus_domestica	MD09G1171100.v1.1 MD17G1156100.v1.1
prunus_persica	Prupe.3G029600_v2.0.a1
pyrus_communis	pycom09g08860 pycom17g14900 pycom17g14910
rosa_chinensis	RchiOBHm_Chr2g0148251
rosa_laevigata	RLG00000020329
rosa_multiflora	Rmu_co8220218.1_g000001 Rmu_sc0001983.1_g000004 Rmu_sc0003937.1_g000004 Rmu_sc0029680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00098970
rosa_rugosa	Rorug02G0405000 Rorug02G0405000 Rorug05G0121000
rosa_samantha	Rh2AG463600 Rh2BG476700 Rh2CG450400 Rh2DG485400 Rh5AG221700
rosa_wichuraiana	Rw2G037790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	54, 410
AccI	GTMKAC	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	1 cut(s)	278
AclI	AACGTT	1 cut(s)	220
AclWI	GGATC	2 cut(s)	197, 342
AcoI	YGGCCR	2 cut(s)	45, 279
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	54, 410
AgsI	TTSAA	3 cut(s)	217, 258, 482
AluBI	AGCT	2 cut(s)	250, 288
AluI	AGCT	2 cut(s)	250, 288
Alw26I	GTCTC	1 cut(s)	237
AlwI	GGATC	2 cut(s)	197, 342
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	45, 279
ApeKI	GCWGC	1 cut(s)	444
ApoI	RAATTY	1 cut(s)	211
AspS9I	GGNCC	1 cut(s)	413
AsuII	TTCGAA	1 cut(s)	425
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	460
BaeI	ACNNNNGTAYC	2 cut(s)	256, 289
BalI	TGGCCA	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	431
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	370
BglII	AGATCT	1 cut(s)	149
BisI	GCNGC	2 cut(s)	279, 445
BlsI	GCNGC	2 cut(s)	280, 446
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmsI	GCATC	5 cut(s)	80, 170, 265, 323, 329
BplI	GAGNNNNNCTC	2 cut(s)	234, 266
Bpu14I	TTCGAA	1 cut(s)	425
BsaBI	GATNNNNATC	1 cut(s)	148
BsaWI	WCCGGW	1 cut(s)	415
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 410
Bse1I	ACTGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	148
BseAI	TCCGGA	1 cut(s)	415
BseGI	GGATG	1 cut(s)	185
BseJI	GATNNNNATC	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	54, 410
BseMII	CTCAG	2 cut(s)	265, 318
BseNI	ACTGG	1 cut(s)	56
BseSI	GKGCMC	1 cut(s)	460
BseX3I	CGGCCG	1 cut(s)	279
BseXI	GCAGC	1 cut(s)	431
Bsh1285I	CGRYCG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	47, 281
BsiEI	CGRYCG	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	54, 410
BsmAI	GTCTC	1 cut(s)	237
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	47, 281
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	460
Bsp13I	TCCGGA	1 cut(s)	415
Bsp143I	GATC	4 cut(s)	83, 149, 189, 347
BspACI	CCGC	1 cut(s)	278
BspANI	GGCC	2 cut(s)	47, 281
BspCNI	CTCAG	2 cut(s)	264, 317
BspEI	TCCGGA	1 cut(s)	415
BspPI	GGATC	2 cut(s)	197, 342
BspT104I	TTCGAA	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	56
BssMI	GATC	4 cut(s)	83, 149, 189, 347
Bst4CI	ACNGT	1 cut(s)	159
BstBI	TTCGAA	1 cut(s)	425
BstDEI	CTNAG	2 cut(s)	251, 304
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	4 cut(s)	86, 152, 192, 350
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	4 cut(s)	83, 149, 189, 347
BstMCI	CGRYCG	1 cut(s)	282
BstSLI	GKGCMC	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	431
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BstZI	CGGCCG	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	47, 281
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	1 cut(s)	265
CviJI	RGCY	4 cut(s)	47, 250, 281, 288
CviKI_1	RGCY	4 cut(s)	47, 250, 281, 288
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	251, 304
DpnI	GATC	4 cut(s)	85, 151, 191, 349
DpnII	GATC	4 cut(s)	83, 149, 189, 347
EaeI	YGGCCR	2 cut(s)	45, 279
EagI	CGGCCG	1 cut(s)	279
EclXI	CGGCCG	1 cut(s)	279
Eco47I	GGWCC	1 cut(s)	413
Eco52I	CGGCCG	1 cut(s)	279
FaiI	YATR	5 cut(s)	166, 291, 354, 466, 468
FalI	AAGNNNNNCTT	2 cut(s)	368, 400
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	2 cut(s)	279, 445
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	279, 445
FspBI	CTAG	1 cut(s)	370
GluI	GCNGC	2 cut(s)	279, 445
HaeIII	GGCC	2 cut(s)	47, 281
HapII	CCGG	1 cut(s)	416
HpaII	CCGG	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188III	TCNNGA	4 cut(s)	206, 306, 370, 416
Hpy8I	GTNNAC	1 cut(s)	129
HpyAV	CCTTC	2 cut(s)	36, 180
HpyCH4III	ACNGT	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	2 cut(s)	183, 197
HpyF3I	CTNAG	2 cut(s)	251, 304
HpySE526I	ACGT	1 cut(s)	220
Kpn2I	TCCGGA	1 cut(s)	415
Kzo9I	GATC	4 cut(s)	83, 149, 189, 347
LpnPI	CCDG	5 cut(s)	37, 51, 245, 291, 429
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	5 cut(s)	80, 170, 265, 323, 329
MaeI	CTAG	1 cut(s)	370
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	4 cut(s)	7, 227, 431, 472
MalI	GATC	4 cut(s)	85, 151, 191, 349
MboI	GATC	4 cut(s)	83, 149, 189, 347
MboII	GAAGA	1 cut(s)	159
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	1 cut(s)	211
MluNI	TGGCCA	1 cut(s)	47
MnlI	CCTC	3 cut(s)	45, 255, 308
Mox20I	TGGCCA	1 cut(s)	47
MroI	TCCGGA	1 cut(s)	415
MscI	TGGCCA	1 cut(s)	47
MslI	CAYNNNNRTG	2 cut(s)	79, 465
Msp20I	TGGCCA	1 cut(s)	47
MspI	CCGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	332
NdeII	GATC	4 cut(s)	83, 149, 189, 347
NmuCI	GTSAC	2 cut(s)	7, 431
NspV	TTCGAA	1 cut(s)	425
PctI	GAATGC	1 cut(s)	332
PflMI	CCANNNNNTGG	2 cut(s)	54, 410
PkrI	GCNGC	2 cut(s)	280, 446
Psp1406I	AACGTT	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	2 cut(s)	79, 465
SatI	GCNGC	2 cut(s)	279, 445
Sau3AI	GATC	4 cut(s)	83, 149, 189, 347
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	460
SetI	ASST	5 cut(s)	223, 252, 266, 290, 319
SfaNI	GCATC	5 cut(s)	80, 170, 265, 323, 329
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	1 cut(s)	413
SmiMI	CAYNNNNRTG	2 cut(s)	79, 465
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	278
SspI	AATATT	1 cut(s)	299
SspMI	CTAG	1 cut(s)	370
TaaI	ACNGT	1 cut(s)	159
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	425
TasI	AATT	1 cut(s)	211
TauI	GCSGC	1 cut(s)	281
TseFI	GTSAC	2 cut(s)	7, 431
TseI	GCWGC	1 cut(s)	444
Tsp45I	GTSAC	2 cut(s)	7, 431
TspDTI	ATGAA	1 cut(s)	160
Van91I	CCANNNNNTGG	2 cut(s)	54, 410
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	211
XbaI	TCTAGA	1 cut(s)	369
XmiI	GTMKAC	1 cut(s)	128
XspI	CTAG	1 cut(s)	370

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.