RLG00000033566

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0020054
Physical Location & Seq
Forward (+)
29029884 .. 29035817
5934 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033566

Sequence Viewer

Length: 411 bp
ATGGTGGGCTTTGACGGTGGGCTCGAGTTCGGTGAAGATTACGCCTGGGACATGCTTGCCGGCACCGATCTCGGAGAAGATGGTGTTGAAGGCGTCGTGGCTCTGCATCTGGCAACTGAAGTCCAGCATGGTGATGTCTCTACTAGATATAAAGGAATTAGAATATGCTTATTGCCCGGGCACCCACTACCACTAGTTCCACCAAATTGGATTTATCATGCTGATAACACAGCCAAGAGTTGGTACTTGAAATATCAAGATCGTTTCCAGCAATATAACCAGTTGCCGCATCCTGAAAGAGTAGCCAATATATCCTTAGAAATTATGGAACTTGGTGATGATGAAACTACTCAACTTGGTGATGTTAATCTGTCCGGCAAAGAGAATACAATGCATCTTGGCGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

137

Amino Acids

15.18

Weight (kDa)

4.46

Isoelectric Point (pI)

28.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020054)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033566
rosa_multiflora Rmu_sc0003593.1_g000004
rosa_samantha Rh2AG432300 Rh2CG418100 Rh4DG039300 Rh5CG102800 Rh7BG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 62, 180
AccB7I CCANNNNNTGG 1 cut(s) 240
AciI CCGC 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 89, 250
AhlI ACTAGT 1 cut(s) 193
AjnI CCWGG 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 142
Ama87I CYCGRG 2 cut(s) 23, 176
AsuC2I CCSGG 2 cut(s) 177, 178
AsuHPI GGTGA 4 cut(s) 44, 143, 347, 371
AvaI CYCGRG 2 cut(s) 23, 176
BaeGI GKGCMC 1 cut(s) 183
BanI GGYRCC 2 cut(s) 62, 180
BanII GRGCYC 1 cut(s) 24
BccI CCATC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 1 cut(s) 46
BcnI CCSGG 2 cut(s) 177, 178
BcoDI GTCTC 1 cut(s) 142
BcuI ACTAGT 1 cut(s) 193
BfaI CTAG 2 cut(s) 144, 194
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 3 cut(s) 46, 177, 178
BmeT110I CYCGRG 2 cut(s) 23, 176
BmiI GGNNCC 2 cut(s) 64, 182
BmrFI CCNGG 3 cut(s) 46, 177, 178
BmsI GCATC 3 cut(s) 115, 298, 403
BpuMI CCSGG 2 cut(s) 177, 178
BsaBI GATNNNNATC 1 cut(s) 366
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 45, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 366
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 2 cut(s) 45, 176
BseGI GGATG 1 cut(s) 289
BseJI GATNNNNATC 1 cut(s) 366
BseLI CCNNNNNNNGG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 280
BseSI GKGCMC 1 cut(s) 183
BshNI GGYRCC 2 cut(s) 62, 180
BsiHKCI CYCGRG 2 cut(s) 23, 176
BsiSI CCGG 3 cut(s) 60, 177, 375
BslFI GGGAC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 1 cut(s) 142
BsmFI GGGAC 1 cut(s) 62
BsoBI CYCGRG 2 cut(s) 23, 176
Bsp1286I GDGCHC 2 cut(s) 24, 183
Bsp143I GATC 2 cut(s) 67, 259
BspACI CCGC 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 64, 182
BspT107I GGYRCC 2 cut(s) 62, 180
BsrFI RCCGGY 1 cut(s) 59
BsrI ACTGG 1 cut(s) 280
BssAI RCCGGY 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 45, 176
BssMI GATC 2 cut(s) 67, 259
BssNI GRCGYC 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 57, 61
BstDEI CTNAG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 289
BstKTI GATC 2 cut(s) 70, 262
BstMAI GTCTC 1 cut(s) 142
BstMBI GATC 2 cut(s) 67, 259
BstNI CCWGG 1 cut(s) 46
BstNSI RCATGY 1 cut(s) 55
BstSCI CCNGG 3 cut(s) 44, 175, 176
BstSLI GKGCMC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 289
Cac8I GCNNGC 2 cut(s) 57, 61
Cfr10I RCCGGY 1 cut(s) 59
Cfr9I CCCGGG 1 cut(s) 176
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 244
CviAII CATG 3 cut(s) 52, 128, 218
CviJI RGCY 5 cut(s) 9, 22, 101, 233, 305
CviKI_1 RGCY 5 cut(s) 9, 22, 101, 233, 305
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 316
DpnI GATC 2 cut(s) 69, 261
DpnII GATC 2 cut(s) 67, 259
Eco24I GRGCYC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 2 cut(s) 23, 176
EcoRII CCWGG 1 cut(s) 44
EcoT22I ATGCAT 1 cut(s) 396
EcoT38I GRGCYC 1 cut(s) 24
FaeI CATG 3 cut(s) 55, 131, 221
FaiI YATR 8 cut(s) 53, 129, 150, 166, 219, 276, 311, 326
FaqI GGGAC 1 cut(s) 62
FatI CATG 3 cut(s) 51, 127, 217
Fnu4HI GCNGC 1 cut(s) 287
FokI GGATG 1 cut(s) 276
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 2 cut(s) 144, 194
GluI GCNGC 1 cut(s) 287
HapII CCGG 3 cut(s) 60, 177, 375
HgaI GACGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 3 cut(s) 55, 131, 221
HpaII CCGG 3 cut(s) 60, 177, 375
HphI GGTGA 4 cut(s) 44, 143, 347, 371
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 2 cut(s) 257, 293
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 2 cut(s) 106, 394
HpyF3I CTNAG 1 cut(s) 316
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 3 cut(s) 55, 131, 221
KroI GCCGGC 1 cut(s) 59
KroNI GCCGGC 1 cut(s) 61
Kzo9I GATC 2 cut(s) 67, 259
LweI GCATC 3 cut(s) 115, 298, 403
MaeI CTAG 2 cut(s) 144, 194
MalI GATC 2 cut(s) 69, 261
MboI GATC 2 cut(s) 67, 259
MboII GAAGA 2 cut(s) 47, 89
MhlI GDGCHC 2 cut(s) 24, 183
MluCI AATT 3 cut(s) 156, 205, 321
Mph1103I ATGCAT 1 cut(s) 396
MroNI GCCGGC 1 cut(s) 59
MseI TTAA 1 cut(s) 366
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 60, 177, 375
MspR9I CCNGG 3 cut(s) 46, 177, 178
MvaI CCWGG 1 cut(s) 46
NaeI GCCGGC 1 cut(s) 61
NciI CCSGG 2 cut(s) 177, 178
NdeII GATC 2 cut(s) 67, 259
NgoMIV GCCGGC 1 cut(s) 59
NlaIII CATG 3 cut(s) 55, 131, 221
NlaIV GGNNCC 2 cut(s) 64, 182
NsiI ATGCAT 1 cut(s) 396
NspI RCATGY 1 cut(s) 55
PaeR7I CTCGAG 1 cut(s) 23
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PdiI GCCGGC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 44
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 2 cut(s) 64, 182
PspXI VCTCGAGB 1 cut(s) 23
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 1 cut(s) 366
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 67, 259
ScrFI CCNGG 3 cut(s) 46, 177, 178
SduI GDGCHC 2 cut(s) 24, 183
SfaNI GCATC 3 cut(s) 115, 298, 403
Sfr274I CTCGAG 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 23
SmaI CCCGGG 1 cut(s) 178
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SpeI ACTAGT 1 cut(s) 193
SrfI GCCCGGGC 1 cut(s) 178
Sse9I AATT 3 cut(s) 156, 205, 321
SsiI CCGC 1 cut(s) 287
SspMI CTAG 2 cut(s) 144, 194
StyD4I CCNGG 3 cut(s) 44, 175, 176
TaaI ACNGT 1 cut(s) 17
TaqI TCGA 1 cut(s) 24
TasI AATT 3 cut(s) 156, 205, 321
TauI GCSGC 1 cut(s) 289
Tru1I TTAA 1 cut(s) 366
Tru9I TTAA 1 cut(s) 366
TspDTI ATGAA 1 cut(s) 357
TspMI CCCGGG 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 240
XceI RCATGY 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 176
XspI CTAG 2 cut(s) 144, 194
Zsp2I ATGCAT 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.