Rh5CG102800

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0020054
Physical Location & Seq
Reverse (-)
8224632 .. 8233858
9227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG102800.1

Sequence Viewer

Length: 471 bp
ATGGAACTCATAGATTTAAGTATCGACGAACTCCGGGACTCCGGAACTGAGCTGACAATGCAGTTCGGACTCGGCATCGATCTCAATGAAAGGATCCCTGGCCCGGTTCGCAGGGTGGAGATTCTGATTTTGACTGACGAGGAGTTGGAGGGTTCAAACATCGGTGGAGGGAGGAGTGGGGCGGGGCATGAGGTGGAGTCGGTTCAGATATGTTTATTGCCTGGGCACCCATTGCCACCGGTTACACCAAATTGGATTTACCATGCAGATGATAAATCTAAAAGTTTGTACTTGAAATATCAAGACCGTTTCCAACAATATGATCAATTGCCACATCCTGAAAGAGTGACTAACATATCCTCAGAAACAGTGCAACTTGACGATGACAATGAACTTACTGATGAAATTGTTCAACTTGGTGATGCCACTATATCTAGCAAAGAAGAAACAATGCATCTTGGTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AFT FAR1 MULE

Protein Analysis

156

Amino Acids

17.44

Weight (kDa)

4.28

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020054)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033566
rosa_multiflora Rmu_sc0003593.1_g000004
rosa_samantha Rh2AG432300 Rh2CG418100 Rh4DG039300 Rh5CG102800 Rh7BG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 225
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 1 cut(s) 182
AclWI GGATC 2 cut(s) 88, 101
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 103
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 3 cut(s) 156, 295, 413
AjnI CCWGG 2 cut(s) 97, 220
AluBI AGCT 1 cut(s) 52
AluI AGCT 1 cut(s) 52
AlwI GGATC 2 cut(s) 88, 101
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 2 cut(s) 35, 104
AsuHPI GGTGA 1 cut(s) 431
BaeGI GKGCMC 1 cut(s) 228
BamHI GGATCC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 225
BciT130I CCWGG 2 cut(s) 99, 222
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 2 cut(s) 35, 104
BfaI CTAG 1 cut(s) 435
Bme1390I CCNGG 4 cut(s) 35, 99, 104, 222
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 2 cut(s) 95, 227
BmrFI CCNGG 4 cut(s) 35, 99, 104, 222
BmsI GCATC 3 cut(s) 84, 412, 463
BpuMI CCSGG 2 cut(s) 35, 104
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 97, 221
BsaWI WCCGGW 2 cut(s) 41, 238
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse118I RCCGGY 1 cut(s) 238
Bse3DI GCAATG 1 cut(s) 230
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 2 cut(s) 99, 222
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 2 cut(s) 97, 221
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 103
BseMI GCAATG 1 cut(s) 230
BseMII CTCAG 2 cut(s) 39, 375
BseRI GAGGAG 2 cut(s) 155, 187
BseSI GKGCMC 1 cut(s) 228
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 1 cut(s) 225
BshTI ACCGGT 1 cut(s) 238
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 4 cut(s) 34, 42, 104, 239
BslFI GGGAC 1 cut(s) 50
BslI CCNNNNNNNGG 1 cut(s) 103
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 228
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 3 cut(s) 79, 93, 322
BspACI CCGC 1 cut(s) 182
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 40, 374
BspDI ATCGAT 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 41
BspLI GGNNCC 2 cut(s) 95, 227
BspPI GGATC 2 cut(s) 88, 101
BspT107I GGYRCC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 238
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 97, 221
BssMI GATC 3 cut(s) 79, 93, 322
Bst2UI CCWGG 2 cut(s) 99, 222
Bst4CI ACNGT 2 cut(s) 308, 370
BstAPI GCANNNNNTGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 334
BstKTI GATC 3 cut(s) 82, 96, 325
BstMBI GATC 3 cut(s) 79, 93, 322
BstMWI GCNNNNNNNGC 3 cut(s) 58, 108, 232
BstNI CCWGG 2 cut(s) 99, 222
BstSCI CCNGG 4 cut(s) 33, 97, 102, 220
BstSLI GKGCMC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 1 cut(s) 334
BtsIMutI CAGTG 1 cut(s) 375
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 78
Csp6I GTAC 1 cut(s) 289
CspAI ACCGGT 1 cut(s) 238
CviAII CATG 2 cut(s) 188, 263
CviJI RGCY 2 cut(s) 52, 102
CviKI_1 RGCY 2 cut(s) 52, 102
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 2 cut(s) 48, 361
DpnI GATC 3 cut(s) 81, 95, 324
DpnII GATC 3 cut(s) 79, 93, 322
EcoRII CCWGG 2 cut(s) 97, 220
EcoT22I ATGCAT 1 cut(s) 456
FaeI CATG 2 cut(s) 191, 266
FaiI YATR 7 cut(s) 11, 189, 211, 264, 321, 356, 431
FaqI GGGAC 1 cut(s) 50
FatI CATG 2 cut(s) 187, 262
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 322
FokI GGATG 1 cut(s) 321
FspBI CTAG 1 cut(s) 435
HaeIII GGCC 1 cut(s) 102
HapII CCGG 4 cut(s) 34, 42, 104, 239
Hin1II CATG 2 cut(s) 191, 266
HinfI GANTC 4 cut(s) 38, 69, 121, 197
HpaII CCGG 4 cut(s) 34, 42, 104, 239
HphI GGTGA 1 cut(s) 431
Hpy188I TCNGA 4 cut(s) 68, 126, 207, 364
Hpy188III TCNNGA 3 cut(s) 42, 302, 338
Hpy99I CGWCG 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 308, 370
HpyCH4V TGCA 4 cut(s) 61, 266, 373, 454
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 108, 232
HpyF3I CTNAG 2 cut(s) 48, 361
Hsp92II CATG 2 cut(s) 191, 266
Kpn2I TCCGGA 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 3 cut(s) 79, 93, 322
LweI GCATC 3 cut(s) 84, 412, 463
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 241, 346
MalI GATC 3 cut(s) 81, 95, 324
MboI GATC 3 cut(s) 79, 93, 322
MboII GAAGA 1 cut(s) 455
MfeI CAATTG 1 cut(s) 326
MflI RGATCY 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 228
MluCI AATT 3 cut(s) 250, 326, 405
MlyI GAGTC 3 cut(s) 32, 63, 206
MmeI TCCRAC 2 cut(s) 126, 337
MnlI CCTC 6 cut(s) 133, 142, 161, 165, 184, 370
Mph1103I ATGCAT 1 cut(s) 456
MroI TCCGGA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 1 cut(s) 17
MslI CAYNNNNRTG 2 cut(s) 267, 459
MspI CCGG 4 cut(s) 34, 42, 104, 239
MspR9I CCNGG 4 cut(s) 35, 99, 104, 222
MunI CAATTG 1 cut(s) 326
MvaI CCWGG 2 cut(s) 99, 222
MwoI GCNNNNNNNGC 3 cut(s) 58, 108, 232
NciI CCSGG 2 cut(s) 35, 104
NdeII GATC 3 cut(s) 79, 93, 322
NlaIII CATG 2 cut(s) 191, 266
NlaIV GGNNCC 2 cut(s) 95, 227
NmeAIII GCCGAG 1 cut(s) 51
NmuCI GTSAC 1 cut(s) 346
NsiI ATGCAT 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 1 cut(s) 121
PfoI TCCNGGA 1 cut(s) 33
PinAI ACCGGT 1 cut(s) 238
PleI GAGTC 3 cut(s) 32, 63, 205
PpsI GAGTC 3 cut(s) 32, 63, 205
Psp6I CCWGG 2 cut(s) 97, 220
PspGI CCWGG 2 cut(s) 97, 220
PspN4I GGNNCC 2 cut(s) 95, 227
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 93
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
RseI CAYNNNNRTG 2 cut(s) 267, 459
SaqAI TTAA 1 cut(s) 17
Sau3AI GATC 3 cut(s) 79, 93, 322
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 3 cut(s) 32, 63, 206
ScrFI CCNGG 4 cut(s) 35, 99, 104, 222
SduI GDGCHC 1 cut(s) 228
SetI ASST 2 cut(s) 54, 195
SfaNI GCATC 3 cut(s) 84, 412, 463
SmiMI CAYNNNNRTG 2 cut(s) 267, 459
Sse9I AATT 3 cut(s) 250, 326, 405
SsiI CCGC 1 cut(s) 182
SspMI CTAG 1 cut(s) 435
StyD4I CCNGG 4 cut(s) 33, 97, 102, 220
TaaI ACNGT 2 cut(s) 308, 370
TaqI TCGA 2 cut(s) 24, 78
TasI AATT 3 cut(s) 250, 326, 405
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 121
Tru1I TTAA 1 cut(s) 17
Tru9I TTAA 1 cut(s) 17
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 346
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 102, 405, 417
TspRI CASTG 1 cut(s) 375
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.