Rh2AG432300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0020054
Physical Location & Seq
Forward (+)
64166796 .. 64171716
4921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG432300.1

Sequence Viewer

Length: 306 bp
ATGGAACTCACCGATTCAAGTATCGAAGAACTCCGGGACTCCGGAACTGAGCCGATGATGCGGTTCGGACTCGGCATCGATCTTAATGAGAGGATCCCTGGCCCAGTTCGCCTGGTGGAGATTCTGATTTTGACTGACGAGGAGTCGGAGGGTTCAAACATAGGGTTGGCATTATCATATGGAATTAGGAGGACTAAGACCTGCCCGTTTCGCATTGGAAGAGTTCAACAAGATAAAGAAAGCCCAACCGCAGCTTTTGAGAGTGGTGGGACTCTGGATGTAGCCGCAGGGTTATCCTCCTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.9

Weight (kDa)

4.48

Isoelectric Point (pI)

67.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020054)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033566
rosa_multiflora Rmu_sc0003593.1_g000004
rosa_samantha Rh2AG432300 Rh2CG418100 Rh4DG039300 Rh5CG102800 Rh7BG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 209
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 3 cut(s) 61, 249, 285
AclWI GGATC 2 cut(s) 88, 101
AgsI TTSAA 3 cut(s) 18, 156, 227
AhdI GACNNNNNGTC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 97, 111
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
AlwI GGATC 2 cut(s) 88, 101
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 35
BamHI GGATCC 1 cut(s) 93
BbvI GCAGC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 99, 113
BcnI CCSGG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 209
BisI GCNGC 2 cut(s) 252, 285
BlsI GCNGC 2 cut(s) 253, 286
Bme1390I CCNGG 3 cut(s) 35, 99, 113
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 3 cut(s) 35, 99, 113
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 48, 84
BmuI ACTGGG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 2 cut(s) 99, 113
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 2 cut(s) 155, 289
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 2 cut(s) 34, 42
BslFI GGGAC 2 cut(s) 50, 283
BsmFI GGGAC 2 cut(s) 50, 283
BsnI GGCC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 79, 93
BspACI CCGC 3 cut(s) 61, 249, 285
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 209
BspPI GGATC 2 cut(s) 88, 101
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 79, 93
Bst2UI CCWGG 2 cut(s) 99, 113
Bst6I CTCTTC 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 48, 195
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 2 cut(s) 82, 96
BstMBI GATC 2 cut(s) 79, 93
BstMWI GCNNNNNNNGC 3 cut(s) 58, 108, 210
BstNI CCWGG 2 cut(s) 99, 113
BstSCI CCNGG 3 cut(s) 33, 97, 111
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 78
CviJI RGCY 5 cut(s) 52, 102, 243, 254, 284
CviKI_1 RGCY 5 cut(s) 52, 102, 243, 254, 284
DdeI CTNAG 2 cut(s) 48, 195
DpnI GATC 2 cut(s) 81, 95
DpnII GATC 2 cut(s) 79, 93
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 1 cut(s) 214
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 1 cut(s) 214
EcoRII CCWGG 2 cut(s) 97, 111
FaiI YATR 4 cut(s) 161, 178, 180, 304
FaqI GGGAC 2 cut(s) 50, 283
FauNDI CATATG 1 cut(s) 178
Fnu4HI GCNGC 2 cut(s) 252, 285
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 2 cut(s) 252, 285
GluI GCNGC 2 cut(s) 252, 285
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 34, 42
HinfI GANTC 6 cut(s) 14, 38, 69, 121, 143, 271
HpaII CCGG 2 cut(s) 34, 42
Hpy188I TCNGA 3 cut(s) 68, 126, 148
Hpy188III TCNNGA 2 cut(s) 42, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 108, 210
HpyF3I CTNAG 2 cut(s) 48, 195
Kpn2I TCCGGA 1 cut(s) 41
Kzo9I GATC 2 cut(s) 79, 93
Lsp1109I GCAGC 1 cut(s) 263
LweI GCATC 2 cut(s) 48, 84
MalI GATC 2 cut(s) 81, 95
MboI GATC 2 cut(s) 79, 93
MboII GAAGA 2 cut(s) 38, 231
MflI RGATCY 1 cut(s) 93
MluCI AATT 1 cut(s) 183
MlyI GAGTC 4 cut(s) 32, 63, 152, 265
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 4 cut(s) 84, 133, 142, 183
MroI TCCGGA 1 cut(s) 41
MseI TTAA 1 cut(s) 84
MspI CCGG 2 cut(s) 34, 42
MspR9I CCNGG 3 cut(s) 35, 99, 113
MvaI CCWGG 2 cut(s) 99, 113
MwoI GCNNNNNNNGC 3 cut(s) 58, 108, 210
NciI CCSGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 178
NdeII GATC 2 cut(s) 79, 93
NlaIV GGNNCC 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 51
PfeI GAWTC 2 cut(s) 14, 121
PfoI TCCNGGA 1 cut(s) 33
PkrI GCNGC 2 cut(s) 253, 286
PleI GAGTC 4 cut(s) 32, 63, 151, 265
PpsI GAGTC 4 cut(s) 32, 63, 151, 265
Psp6I CCWGG 2 cut(s) 97, 111
PspGI CCWGG 2 cut(s) 97, 111
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 93
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 252, 285
Sau3AI GATC 2 cut(s) 79, 93
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 4 cut(s) 32, 63, 152, 265
ScrFI CCNGG 3 cut(s) 35, 99, 113
SetI ASST 2 cut(s) 203, 256
SfaNI GCATC 2 cut(s) 48, 84
Sse9I AATT 1 cut(s) 183
SsiI CCGC 3 cut(s) 61, 249, 285
StyD4I CCNGG 3 cut(s) 33, 97, 111
TaqI TCGA 2 cut(s) 24, 78
TasI AATT 1 cut(s) 183
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 2 cut(s) 14, 121
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.