Rh2CG418100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0020054
Physical Location & Seq
Forward (+)
57140574 .. 57149462
8889 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG418100.1

Sequence Viewer

Length: 324 bp
ATGGAACTCACCGATTCAAGTATCGAAGAACTCCGGGACTCCGGAACTGAGCCGATGATGCGGTTCGGACTCGGCATCGATCTTAATGAGAGGATCCCTGGCCCAGTTCGCCTGGTGGAGATTCTGATTTTGACTGACGAGGAGTCGGAGGGTTCAAACATAGTGTTGTTGCACCGTCAGTGCATAGAATCCGTTCCCCATGAACTATGGAGCTTCTCAAGGTTGGCATTATCATATGGAATTAGGAGGACTAAGACCTGCCCGTTTCGCATTGGAAGAGTTCAACAAGATAAAGAACTTCATCCCTCTTCCCTCTTAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.2

Weight (kDa)

5.15

Isoelectric Point (pI)

67.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020054)

Species Orthologous Gene IDs
rosa_laevigata RLG00000033566
rosa_multiflora Rmu_sc0003593.1_g000004
rosa_samantha Rh2AG432300 Rh2CG418100 Rh4DG039300 Rh5CG102800 Rh7BG476100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 41
AciI CCGC 1 cut(s) 61
AclWI GGATC 2 cut(s) 88, 101
AgsI TTSAA 3 cut(s) 18, 156, 284
AhdI GACNNNNNGTC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 97, 111
AluBI AGCT 1 cut(s) 213
AluI AGCT 1 cut(s) 213
AlwI GGATC 2 cut(s) 88, 101
Aor13HI TCCGGA 1 cut(s) 41
AoxI GGCC 1 cut(s) 100
Asp700I GAANNNNTTC 1 cut(s) 192
AspS9I GGNCC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 35
BamHI GGATCC 1 cut(s) 93
BciT130I CCWGG 2 cut(s) 99, 113
BcnI CCSGG 1 cut(s) 35
BfuAI ACCTGC 1 cut(s) 266
Bme1390I CCNGG 3 cut(s) 35, 99, 113
BmeRI GACNNNNNGTC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 101
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 3 cut(s) 35, 99, 113
BmrI ACTGGG 1 cut(s) 98
BmsI GCATC 2 cut(s) 48, 84
BmuI ACTGGG 1 cut(s) 98
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 35
Bsa29I ATCGAT 1 cut(s) 78
BsaJI CCNNGG 1 cut(s) 97
BsaWI WCCGGW 1 cut(s) 41
Bse1I ACTGG 1 cut(s) 104
BseAI TCCGGA 1 cut(s) 41
BseBI CCWGG 2 cut(s) 99, 113
BseCI ATCGAT 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 97
BseGI GGATG 1 cut(s) 301
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 102
BshVI ATCGAT 1 cut(s) 78
BsiSI CCGG 2 cut(s) 34, 42
BslFI GGGAC 1 cut(s) 50
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 102
Bsp13I TCCGGA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 79, 93
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 78
BspEI TCCGGA 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 95
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 88, 101
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 97
BssMI GATC 2 cut(s) 79, 93
Bst2UI CCWGG 2 cut(s) 99, 113
Bst4CI ACNGT 1 cut(s) 176
Bst6I CTCTTC 2 cut(s) 271, 313
BstDEI CTNAG 2 cut(s) 48, 252
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 82, 96
BstMBI GATC 2 cut(s) 79, 93
BstMWI GCNNNNNNNGC 3 cut(s) 58, 108, 267
BstNI CCWGG 2 cut(s) 99, 113
BstSCI CCNGG 3 cut(s) 33, 97, 111
BstX2I RGATCY 1 cut(s) 93
BstYI RGATCY 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 78
BsuRI GGCC 1 cut(s) 102
BsuTUI ATCGAT 1 cut(s) 78
BtsCI GGATG 1 cut(s) 301
BtsIMutI CAGTG 1 cut(s) 185
BveI ACCTGC 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 101
ClaI ATCGAT 1 cut(s) 78
CviAII CATG 1 cut(s) 200
CviJI RGCY 3 cut(s) 52, 102, 213
CviKI_1 RGCY 3 cut(s) 52, 102, 213
DdeI CTNAG 2 cut(s) 48, 252
DpnI GATC 2 cut(s) 81, 95
DpnII GATC 2 cut(s) 79, 93
DriI GACNNNNNGTC 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 271, 313
Eam1105I GACNNNNNGTC 1 cut(s) 142
EarI CTCTTC 2 cut(s) 271, 313
EcoRII CCWGG 2 cut(s) 97, 111
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 161, 185, 201, 208, 235, 237
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 199
FauNDI CATATG 1 cut(s) 235
FokI GGATG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 102
HapII CCGG 2 cut(s) 34, 42
Hin1II CATG 1 cut(s) 203
HinfI GANTC 6 cut(s) 14, 38, 69, 121, 143, 188
HpaII CCGG 2 cut(s) 34, 42
Hpy188I TCNGA 3 cut(s) 68, 126, 148
Hpy188III TCNNGA 1 cut(s) 42
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4V TGCA 2 cut(s) 172, 183
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 108, 267
HpyF3I CTNAG 2 cut(s) 48, 252
Hsp92II CATG 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 41
Kzo9I GATC 2 cut(s) 79, 93
LmnI GCTCC 1 cut(s) 210
LpnPI CCDG 8 cut(s) 47, 55, 84, 98, 111, 117, 125, 271
LweI GCATC 2 cut(s) 48, 84
MalI GATC 2 cut(s) 81, 95
MboI GATC 2 cut(s) 79, 93
MboII GAAGA 3 cut(s) 38, 288, 300
MflI RGATCY 1 cut(s) 93
MluCI AATT 1 cut(s) 240
MlyI GAGTC 3 cut(s) 32, 63, 152
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 6 cut(s) 84, 133, 142, 240, 316, 323
MroI TCCGGA 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 192
MseI TTAA 3 cut(s) 84, 317, 322
MspI CCGG 2 cut(s) 34, 42
MspR9I CCNGG 3 cut(s) 35, 99, 113
MvaI CCWGG 2 cut(s) 99, 113
MwoI GCNNNNNNNGC 3 cut(s) 58, 108, 267
NciI CCSGG 1 cut(s) 35
NdeI CATATG 1 cut(s) 235
NdeII GATC 2 cut(s) 79, 93
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 51
PdmI GAANNNNTTC 1 cut(s) 192
PfeI GAWTC 3 cut(s) 14, 121, 188
PfoI TCCNGGA 1 cut(s) 33
PleI GAGTC 3 cut(s) 32, 63, 151
PpsI GAGTC 3 cut(s) 32, 63, 151
Psp6I CCWGG 2 cut(s) 97, 111
PspGI CCWGG 2 cut(s) 97, 111
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 101
PsuI RGATCY 1 cut(s) 93
SaqAI TTAA 3 cut(s) 84, 317, 322
Sau3AI GATC 2 cut(s) 79, 93
Sau96I GGNCC 1 cut(s) 101
SchI GAGTC 3 cut(s) 32, 63, 152
ScrFI CCNGG 3 cut(s) 35, 99, 113
SetI ASST 3 cut(s) 215, 224, 260
SfaNI GCATC 2 cut(s) 48, 84
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
Sse9I AATT 1 cut(s) 240
SsiI CCGC 1 cut(s) 61
StyD4I CCNGG 3 cut(s) 33, 97, 111
TaaI ACNGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 24, 78
TasI AATT 1 cut(s) 240
TfiI GAWTC 3 cut(s) 14, 121, 188
Tru1I TTAA 3 cut(s) 84, 317, 322
Tru9I TTAA 3 cut(s) 84, 317, 322
TscAI CASTG 1 cut(s) 185
TspDTI ATGAA 2 cut(s) 216, 290
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 185
XmnI GAANNNNTTC 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.