RLG00000034047
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018609
Physical Location & Seq
Forward (+)
35819898 .. 35824107
4210 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034047

Sequence Viewer

Length: 663 bp
ATGGGTTTGCAAAGATTGTGTCTTTATGGTGTTCATGACAAAAAGAGCACCATGTCTCTGAATCTTGTTGGAGACGAATTTGATCAGGATGACAAAAAGGCTTGGATCCAAAAGGCTTTCATGACCACCCCATTTTGCCCCCTATTTTCTTTGCTCTTTGACCTTTTTGTCCCTCATTGCTGCCCCGATCTTGTCACGTCATCTGTGCTTCTCTGGATTTCCCTCCCCTACGCCTTTGTCTCTTCCGCTGCTGCCATCTCTTTTCTTTCGTTTTGGGTTGTGGACTGCATCGGTTTACCATGTTCTGGAATTGCGTTGAGAGAAGTAGGAGAGCTCCAGGACAATCCCGAATTTCCAGCTCTGGCAATGGCCGCCAGCCTTACATCTCCCCTGCGCAGAGTCTTGAAATCTCAAAATTTGCCTGGAGAACTCCCACCAGAATTTATCAGGCTCCTCTGTCTCCAAGAAATTGACCTCTCCCGCAACTGCCTGAATGGTACTATCCTCCAGAATGGGTGGAAGCGTCGCAAGATTGACAAAGAGCATCGCTTGGCTGCACAGGCTGTTCGTTGGCAAAAGACCGGCAAGACCAAGGCTATAAAAAAAAATGGAGTTCATGGGGGCTGTAAAAAGATCGTGGTGGTGTATAGAAGTTCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

221

Amino Acids

24.6

Weight (kDa)

9.17

Isoelectric Point (pI)

48.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018609)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0061421
rosa_laevigata RLG00000034047
rosa_roxburghii Rroxscaffold_4G00318370 Rroxscaffold_6G00394370 Rroxscaffold_7G00190450
rosa_rugosa Rorug07G0050000
rosa_samantha Rh3BG297200 Rh6AG002500 Rh6AG229700
rosa_wichuraiana Rw2G039330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
Acc16I TGCGCA 1 cut(s) 395
AccB7I CCANNNNNTGG 1 cut(s) 305
AciI CCGC 3 cut(s) 246, 372, 481
AclWI GGATC 2 cut(s) 100, 113
AcoI YGGCCR 1 cut(s) 369
AcsI RAATTY 4 cut(s) 77, 350, 415, 440
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 406, 657
AjiI CACGTC 1 cut(s) 198
AjnI CCWGG 2 cut(s) 336, 421
AluBI AGCT 2 cut(s) 334, 359
AluI AGCT 2 cut(s) 334, 359
Alw21I GWGCWC 2 cut(s) 50, 336
Alw26I GTCTC 4 cut(s) 60, 66, 244, 464
AlwI GGATC 2 cut(s) 100, 113
AoxI GGCC 1 cut(s) 369
ApeKI GCWGC 4 cut(s) 180, 248, 251, 554
ApoI RAATTY 4 cut(s) 77, 350, 415, 440
ArsI GACNNNNNNTTYG 1 cut(s) 36
AspLEI GCGC 1 cut(s) 396
BamHI GGATCC 1 cut(s) 105
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 50, 336
BbvI GCAGC 4 cut(s) 167, 235, 238, 541
BccI CCATC 1 cut(s) 263
BciT130I CCWGG 2 cut(s) 338, 423
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 4 cut(s) 60, 66, 244, 464
BisI GCNGC 5 cut(s) 181, 249, 252, 372, 555
BlsI GCNGC 5 cut(s) 182, 250, 253, 373, 556
Bme1390I CCNGG 2 cut(s) 338, 423
BmgBI CACGTC 1 cut(s) 198
BmiI GGNNCC 2 cut(s) 107, 452
BmrFI CCNGG 2 cut(s) 338, 423
BmsI GCATC 2 cut(s) 297, 553
BpmI CTGGAG 3 cut(s) 320, 444, 491
BsaJI CCNNGG 1 cut(s) 591
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 581
Bse3DI GCAATG 2 cut(s) 175, 372
BseBI CCWGG 2 cut(s) 338, 423
BseDI CCNNGG 1 cut(s) 591
BseGI GGATG 1 cut(s) 94
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMI GCAATG 2 cut(s) 175, 372
BseRI GAGGAG 1 cut(s) 443
BseXI GCAGC 4 cut(s) 167, 235, 238, 541
BsgI GTGCAG 1 cut(s) 540
BshFI GGCC 1 cut(s) 371
BsiHKAI GWGCWC 2 cut(s) 50, 336
BsiSI CCGG 1 cut(s) 582
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 4 cut(s) 60, 66, 244, 464
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 1 cut(s) 371
Bsp1286I GDGCHC 2 cut(s) 50, 336
Bsp143I GATC 4 cut(s) 82, 105, 187, 633
BspACI CCGC 3 cut(s) 246, 372, 481
BspANI GGCC 1 cut(s) 371
BspHI TCATGA 2 cut(s) 34, 120
BspLI GGNNCC 2 cut(s) 107, 452
BspPI GGATC 2 cut(s) 100, 113
BsrDI GCAATG 2 cut(s) 175, 372
BsrFI RCCGGY 1 cut(s) 581
BssAI RCCGGY 1 cut(s) 581
BssECI CCNNGG 1 cut(s) 591
BssMI GATC 4 cut(s) 82, 105, 187, 633
BssT1I CCWWGG 1 cut(s) 591
Bst2UI CCWGG 2 cut(s) 338, 423
Bst6I CTCTTC 1 cut(s) 247
BstC8I GCNNGC 1 cut(s) 376
BstF5I GGATG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 4 cut(s) 85, 108, 190, 636
BstMAI GTCTC 4 cut(s) 60, 66, 244, 464
BstMBI GATC 4 cut(s) 82, 105, 187, 633
BstMWI GCNNNNNNNGC 2 cut(s) 371, 560
BstNI CCWGG 2 cut(s) 338, 423
BstSCI CCNGG 2 cut(s) 336, 421
BstV1I GCAGC 4 cut(s) 167, 235, 238, 541
BstX2I RGATCY 1 cut(s) 105
BstYI RGATCY 1 cut(s) 105
BsuRI GGCC 1 cut(s) 371
BtgZI GCGATG 1 cut(s) 530
BtrI CACGTC 1 cut(s) 198
BtsCI GGATG 1 cut(s) 94
Cac8I GCNNGC 1 cut(s) 376
CciI TCATGA 2 cut(s) 34, 120
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 581
CseI GACGC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 498
CviAII CATG 5 cut(s) 35, 52, 121, 300, 617
CviQI GTAC 1 cut(s) 498
DpnI GATC 4 cut(s) 84, 107, 189, 635
DpnII GATC 4 cut(s) 82, 105, 187, 633
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 1 cut(s) 369
Eam1104I CTCTTC 1 cut(s) 247
EarI CTCTTC 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 334
Eco130I CCWWGG 1 cut(s) 591
Eco24I GRGCYC 1 cut(s) 336
Eco53kI GAGCTC 1 cut(s) 334
EcoICRI GAGCTC 1 cut(s) 334
EcoRII CCWGG 2 cut(s) 336, 421
EcoT14I CCWWGG 1 cut(s) 591
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 591
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 5 cut(s) 38, 55, 124, 303, 620
FaiI YATR 8 cut(s) 27, 36, 53, 122, 301, 599, 618, 648
FaqI GGGAC 1 cut(s) 155
FatI CATG 5 cut(s) 34, 51, 120, 299, 616
FauI CCCGC 1 cut(s) 488
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 181, 249, 252, 372, 555
FokI GGATG 1 cut(s) 101
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 5 cut(s) 181, 249, 252, 372, 555
FspI TGCGCA 1 cut(s) 395
GlaI GCGC 1 cut(s) 395
GluI GCNGC 5 cut(s) 181, 249, 252, 372, 555
GsuI CTGGAG 3 cut(s) 320, 444, 491
HaeIII GGCC 1 cut(s) 371
HapII CCGG 1 cut(s) 582
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 396
Hin1II CATG 5 cut(s) 38, 55, 124, 303, 620
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HinfI GANTC 2 cut(s) 61, 399
HpaII CCGG 1 cut(s) 582
Hpy166II GTNNAC 2 cut(s) 283, 296
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 8 cut(s) 35, 86, 121, 214, 306, 347, 403, 508
Hpy8I GTNNAC 2 cut(s) 283, 296
Hpy99I CGWCG 1 cut(s) 528
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 3 cut(s) 10, 288, 557
HpyF10VI GCNNNNNNNGC 2 cut(s) 371, 560
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 5 cut(s) 38, 55, 124, 303, 620
HspAI GCGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 4 cut(s) 82, 105, 187, 633
LmnI GCTCC 2 cut(s) 339, 456
Lsp1109I GCAGC 4 cut(s) 167, 235, 238, 541
LweI GCATC 2 cut(s) 297, 553
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 1 cut(s) 193
MalI GATC 4 cut(s) 84, 107, 189, 635
MboI GATC 4 cut(s) 82, 105, 187, 633
MboII GAAGA 1 cut(s) 234
MflI RGATCY 1 cut(s) 105
MhlI GDGCHC 2 cut(s) 50, 336
MluCI AATT 6 cut(s) 77, 309, 350, 415, 440, 468
MlyI GAGTC 1 cut(s) 408
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 183, 233, 464, 485, 515
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 1 cut(s) 582
MspR9I CCNGG 2 cut(s) 338, 423
MvaI CCWGG 2 cut(s) 338, 423
MwoI GCNNNNNNNGC 2 cut(s) 371, 560
NdeII GATC 4 cut(s) 82, 105, 187, 633
NlaIII CATG 5 cut(s) 38, 55, 124, 303, 620
NlaIV GGNNCC 2 cut(s) 107, 452
NmuCI GTSAC 1 cut(s) 193
NsbI TGCGCA 1 cut(s) 395
PagI TCATGA 2 cut(s) 34, 120
PfeI GAWTC 1 cut(s) 61
PflMI CCANNNNNTGG 1 cut(s) 305
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 5 cut(s) 182, 250, 253, 373, 556
PleI GAGTC 1 cut(s) 407
PpsI GAGTC 1 cut(s) 407
Psp124BI GAGCTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 336, 421
PspGI CCWGG 2 cut(s) 336, 421
PspN4I GGNNCC 2 cut(s) 107, 452
PsuI RGATCY 1 cut(s) 105
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
SacI GAGCTC 1 cut(s) 336
SatI GCNGC 5 cut(s) 181, 249, 252, 372, 555
Sau3AI GATC 4 cut(s) 82, 105, 187, 633
SchI GAGTC 1 cut(s) 408
ScrFI CCNGG 2 cut(s) 338, 423
SduI GDGCHC 2 cut(s) 50, 336
SetI ASST 5 cut(s) 165, 200, 336, 361, 477
SfaNI GCATC 2 cut(s) 297, 553
Sse9I AATT 6 cut(s) 77, 309, 350, 415, 440, 468
SsiI CCGC 3 cut(s) 246, 372, 481
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 2 cut(s) 336, 421
StyI CCWWGG 1 cut(s) 591
TaiI ACGT 1 cut(s) 200
TasI AATT 6 cut(s) 77, 309, 350, 415, 440, 468
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 1 cut(s) 61
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 4 cut(s) 180, 248, 251, 554
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 3 cut(s) 23, 109, 605
Van91I CCANNNNNTGG 1 cut(s) 305
XapI RAATTY 4 cut(s) 77, 350, 415, 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.