Rh6AG002500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018609
Physical Location & Seq
Reverse (-)
538235 .. 546423
8189 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG002500.1

Sequence Viewer

Length: 486 bp
ATGTCCGCTGAGACCGGATGGAGAAGAGAGGCGATTCTGGGTTATTGGTTTGCTAAATCCGAGCCCACCGCCGACAATACTTCAAATTATGAGTTATACTTTTTGGCTGGACTTACACAAGGAGAGAACAAGACCAGGTGTTTATGGAAAATACTGATTGAGTTTTTTGAGTTGCAACAAGTTTCACAGTTTGATTTGTTTACACTGGATGATATTGATTCTACTTTCCAAAATGTCACCAGGCTGACCAATGCTCAGCATCATCATCTTACTGGTGAAGTTGGTCCAGAGGGCCAGGGCGAAGAGCATGATGATCTTCTGGAGAGTGTCAGCGGCGATGAAGCGGAAGTTCATGGTGTAAGGGTTGTTGGTGGAGATGAAGTGGAAGGAGAGAAGAGGAACTGCGAAGATTGCGATGAAGCGGTTGATTCTAGAGCATTGGTCCGGGGAGAAGATCTTCCACCACTGGACGGAGCCGTAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.93

Weight (kDa)

4.29

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018609)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0061421
rosa_laevigata RLG00000034047
rosa_roxburghii Rroxscaffold_4G00318370 Rroxscaffold_6G00394370 Rroxscaffold_7G00190450
rosa_rugosa Rorug07G0050000
rosa_samantha Rh3BG297200 Rh6AG002500 Rh6AG229700
rosa_wichuraiana Rw2G039330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 6, 69, 333, 344, 422
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 1 cut(s) 84
AjnI CCWGG 3 cut(s) 134, 239, 294
Alw26I GTCTC 1 cut(s) 5
AoxI GGCC 1 cut(s) 292
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 3 cut(s) 284, 292, 442
AsuC2I CCSGG 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 229, 287
AvaII GGWCC 2 cut(s) 284, 442
BanII GRGCYC 1 cut(s) 66
BccI CCATC 1 cut(s) 12
BceAI ACGGC 1 cut(s) 461
BciT130I CCWGG 3 cut(s) 136, 241, 296
BcnI CCSGG 1 cut(s) 446
BcoDI GTCTC 1 cut(s) 5
BfaI CTAG 1 cut(s) 432
BglII AGATCT 1 cut(s) 454
BisI GCNGC 1 cut(s) 334
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 1 cut(s) 335
Bme1390I CCNGG 4 cut(s) 136, 241, 296, 446
Bme18I GGWCC 2 cut(s) 284, 442
BmgT120I GGNCC 3 cut(s) 284, 292, 442
BmiI GGNNCC 1 cut(s) 475
BmrFI CCNGG 4 cut(s) 136, 241, 296, 446
BmsI GCATC 1 cut(s) 268
BpmI CTGGAG 1 cut(s) 341
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 295, 445
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 3 cut(s) 210, 277, 471
BseBI CCWGG 3 cut(s) 136, 241, 296
BseDI CCNNGG 2 cut(s) 295, 445
BseGI GGATG 2 cut(s) 23, 214
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 3 cut(s) 210, 277, 471
BshFI GGCC 1 cut(s) 294
BsiSI CCGG 2 cut(s) 15, 445
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 1 cut(s) 5
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 313, 454
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 5 cut(s) 6, 69, 333, 344, 422
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 475
BspQI GCTCTTC 1 cut(s) 297
BspTNI GGTCTC 1 cut(s) 5
BsrI ACTGG 3 cut(s) 210, 277, 471
BssECI CCNNGG 2 cut(s) 295, 445
BssMI GATC 2 cut(s) 313, 454
Bst2UI CCWGG 3 cut(s) 136, 241, 296
Bst4CI ACNGT 1 cut(s) 189
Bst6I CTCTTC 3 cut(s) 19, 297, 389
BstDEI CTNAG 2 cut(s) 9, 255
BstF5I GGATG 2 cut(s) 23, 214
BstKTI GATC 2 cut(s) 316, 457
BstMAI GTCTC 1 cut(s) 5
BstMBI GATC 2 cut(s) 313, 454
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 3 cut(s) 136, 241, 296
BstSCI CCNGG 4 cut(s) 134, 239, 294, 444
BstX2I RGATCY 1 cut(s) 454
BstYI RGATCY 1 cut(s) 454
BsuRI GGCC 1 cut(s) 294
BtgZI GCGATG 2 cut(s) 351, 429
BtsCI GGATG 2 cut(s) 23, 214
BtsIMutI CAGTG 2 cut(s) 203, 464
Cfr13I GGNCC 3 cut(s) 284, 292, 442
CsiI ACCWGGT 1 cut(s) 134
CviAII CATG 2 cut(s) 308, 353
CviJI RGCY 6 cut(s) 64, 107, 244, 294, 476, 483
CviKI_1 RGCY 6 cut(s) 64, 107, 244, 294, 476, 483
DdeI CTNAG 2 cut(s) 9, 255
DpnI GATC 2 cut(s) 315, 456
DpnII GATC 2 cut(s) 313, 454
Eam1104I CTCTTC 3 cut(s) 19, 297, 389
EarI CTCTTC 3 cut(s) 19, 297, 389
Eco24I GRGCYC 1 cut(s) 66
Eco31I GGTCTC 1 cut(s) 5
Eco47I GGWCC 2 cut(s) 284, 442
EcoRII CCWGG 3 cut(s) 134, 239, 294
EcoT38I GRGCYC 1 cut(s) 66
FaeI CATG 2 cut(s) 311, 356
FaiI YATR 5 cut(s) 90, 97, 145, 309, 354
FatI CATG 2 cut(s) 307, 352
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 2 cut(s) 30, 221
FriOI GRGCYC 1 cut(s) 66
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 1 cut(s) 432
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 1 cut(s) 294
HapII CCGG 2 cut(s) 15, 445
Hin1II CATG 2 cut(s) 311, 356
HinfI GANTC 3 cut(s) 34, 218, 428
HpaII CCGG 2 cut(s) 15, 445
HphI GGTGA 2 cut(s) 229, 287
Hpy166II GTNNAC 1 cut(s) 201
Hpy188I TCNGA 1 cut(s) 61
Hpy188III TCNNGA 3 cut(s) 287, 320, 432
Hpy8I GTNNAC 1 cut(s) 201
HpyAV CCTTC 1 cut(s) 380
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 1 cut(s) 175
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 2 cut(s) 9, 255
Hsp92II CATG 2 cut(s) 311, 356
Kzo9I GATC 2 cut(s) 313, 454
LguI GCTCTTC 1 cut(s) 297
LmnI GCTCC 1 cut(s) 473
LweI GCATC 1 cut(s) 268
MabI ACCWGGT 1 cut(s) 134
MaeI CTAG 1 cut(s) 432
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 315, 456
MboI GATC 2 cut(s) 313, 454
MboII GAAGA 7 cut(s) 36, 308, 314, 406, 419, 449, 464
MflI RGATCY 1 cut(s) 454
MhlI GDGCHC 1 cut(s) 66
MluCI AATT 1 cut(s) 85
MnlI CCTC 3 cut(s) 22, 283, 390
MroXI GAANNNNTTC 1 cut(s) 456
MspA1I CMGCKG 2 cut(s) 8, 333
MspI CCGG 2 cut(s) 15, 445
MspR9I CCNGG 4 cut(s) 136, 241, 296, 446
MvaI CCWGG 3 cut(s) 136, 241, 296
MwoI GCNNNNNNNGC 1 cut(s) 411
NciI CCSGG 1 cut(s) 446
NdeII GATC 2 cut(s) 313, 454
NlaIII CATG 2 cut(s) 311, 356
NlaIV GGNNCC 1 cut(s) 475
NmuCI GTSAC 1 cut(s) 235
PciSI GCTCTTC 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 34, 218, 428
PkrI GCNGC 1 cut(s) 335
Psp6I CCWGG 3 cut(s) 134, 239, 294
PspGI CCWGG 3 cut(s) 134, 239, 294
PspN4I GGNNCC 1 cut(s) 475
PspPI GGNCC 3 cut(s) 284, 292, 442
PsuI RGATCY 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 297
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 2 cut(s) 313, 454
Sau96I GGNCC 3 cut(s) 284, 292, 442
ScrFI CCNGG 4 cut(s) 136, 241, 296, 446
SduI GDGCHC 1 cut(s) 66
SetI ASST 1 cut(s) 140
SexAI ACCWGGT 1 cut(s) 134
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 2 cut(s) 284, 442
Sse9I AATT 1 cut(s) 85
SsiI CCGC 5 cut(s) 6, 69, 333, 344, 422
SspMI CTAG 1 cut(s) 432
StyD4I CCNGG 4 cut(s) 134, 239, 294, 444
TaaI ACNGT 1 cut(s) 189
TasI AATT 1 cut(s) 85
TauI GCSGC 1 cut(s) 336
TfiI GAWTC 3 cut(s) 34, 218, 428
TscAI CASTG 2 cut(s) 210, 471
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 4 cut(s) 341, 354, 393, 432
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 210, 471
VpaK11BI GGWCC 2 cut(s) 284, 442
XbaI TCTAGA 1 cut(s) 431
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 1 cut(s) 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.