Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

3573335 .. 3576727

Gene Structure 3393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0050000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAAGCTCTAAGCCCAGCAACCCCTTACACTCCGAAATCGACGAACCCGAATCCCCAGACTCCGACCCAAAGCCCATCACCATTAGCAGCGTCGTCTGCTCGGCTGTGGAGGCCCACCGCGCAGCGCAACCTGAGAAACCAATGGTCCAAGTTAGCTTCTTTAAGACAACAATGGGAGTCTGCTTCTTCTAGGGGAAGAGCATCCGCCACGTCGCTCGTAAACTCCTACGTTTCCATCAAGTACATGCCTTCAAGGGAGTTGGGGGTTCTCAGCGACATGCCGGATATACTAAAGAAAGCTTCACAGAAATTGCTTAAGCAGCAGGAACTTCATCGGAGCAAGCTTTTATCATCATACAAGGACATGGTGTCTGTTGTAACTAATATGGTCAAAACTAGTAGATCCATGAGATGCTTTGTCAAAGGGTCGAGCAATAGTCCACTTTTACAATTTTCTGGCTATTCCGAATGTAATAATGACCCTGGAGATGGTGGTGGGATTCCAGTCTTCACATTTTGGTCGATCTCTTGCTTCGAGAAAGTGGCGGAGGAGCTTGTCCATATGCTTATATTGGAACTAAATTTGAAGCGTTTGCTTGTGGTGGACTTACTGTCAGTTAGTTGCAAAGTTCCAATGGCTAACGGTTTGCATTGGTCTGAAGAGCTTTATCCAGGAGAATTTGGTGATTTGAGTATGTGCAACTTATTATCTGAGGAAACTTGTAAACCAGTCTATCCAAGATTGCATGGTCAGAAATCTGATAAGCCAACTATTCGACGTAATCAGCAGCCAGATCATGATGTTTTGCAGGTTTATCTAACAACATGGCTCATAGAGGTGAACATTGATACTCACAGGGTGGATGAAATATTTGCTGAAGTTGGGGAGGAAATACATTGTAGACTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

304

Amino Acids

34.18

Weight (kDa)

8.41

Isoelectric Point (pI)

53.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	904
AccII	CGCG	1 cut(s)	122
AciI	CCGC	3 cut(s)	120, 207, 548
AclWI	GGATC	1 cut(s)	399
AcsI	RAATTY	2 cut(s)	583, 680
AcuI	CTGAAG	2 cut(s)	681, 900
AdeI	CACNNNGTG	1 cut(s)	862
AfaI	GTAC	1 cut(s)	245
AfiI	CCNNNNNNNGG	1 cut(s)	491
AflII	CTTAAG	1 cut(s)	317
AgsI	TTSAA	2 cut(s)	255, 589
AhdI	GACNNNNNGTC	2 cut(s)	370, 613
AhlI	ACTAGT	1 cut(s)	398
AjiI	CACGTC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	484, 673
AluBI	AGCT	6 cut(s)	8, 158, 302, 346, 556, 667
AluI	AGCT	6 cut(s)	8, 158, 302, 346, 556, 667
AlwI	GGATC	1 cut(s)	399
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	89, 124, 322, 790
ApoI	RAATTY	2 cut(s)	583, 680
AspLEI	GCGC	2 cut(s)	124, 129
AspS9I	GGNCC	2 cut(s)	114, 147
AsuHPI	GGTGA	3 cut(s)	72, 698, 853
AvaII	GGWCC	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	4 cut(s)	101, 136, 334, 802
BccI	CCATC	3 cut(s)	85, 245, 485
BciT130I	CCWGG	2 cut(s)	486, 675
BcuI	ACTAGT	1 cut(s)	398
BfaI	CTAG	2 cut(s)	192, 399
BfrI	CTTAAG	1 cut(s)	317
BfuAI	ACCTGC	1 cut(s)	802
BisI	GCNGC	4 cut(s)	90, 125, 323, 791
BlsI	GCNGC	4 cut(s)	91, 126, 324, 792
Bme1390I	CCNGG	2 cut(s)	486, 675
Bme18I	GGWCC	1 cut(s)	147
BmeRI	GACNNNNNGTC	2 cut(s)	370, 613
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	114, 147
BmrFI	CCNGG	2 cut(s)	486, 675
BmsI	GCATC	2 cut(s)	212, 404
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	507
BsaJI	CCNNGG	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	2 cut(s)	506, 731
BseBI	CCWGG	2 cut(s)	486, 675
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	2 cut(s)	203, 871
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMII	CTCAG	3 cut(s)	125, 286, 705
BseNI	ACTGG	2 cut(s)	506, 731
BseRI	GAGGAG	1 cut(s)	566
BseXI	GCAGC	4 cut(s)	101, 136, 334, 802
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	115
BsiSI	CCGG	1 cut(s)	284
BslI	CCNNNNNNNGG	1 cut(s)	491
BsnI	GGCC	1 cut(s)	115
Bsp143I	GATC	3 cut(s)	404, 525, 796
BspACI	CCGC	3 cut(s)	120, 207, 548
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	3 cut(s)	126, 285, 706
BspFNI	CGCG	1 cut(s)	122
BspHI	TCATGA	2 cut(s)	799, 911
BspMI	ACCTGC	1 cut(s)	802
BspPI	GGATC	1 cut(s)	399
BspQI	GCTCTTC	2 cut(s)	193, 657
BspTI	CTTAAG	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	506, 731
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	404, 525, 796
Bst2UI	CCWGG	2 cut(s)	486, 675
Bst4CI	ACNGT	2 cut(s)	615, 647
Bst6I	CTCTTC	2 cut(s)	193, 657
BstAFI	CTTAAG	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	344
BstDEI	CTNAG	4 cut(s)	11, 134, 272, 714
BstF5I	GGATG	2 cut(s)	203, 871
BstFNI	CGCG	1 cut(s)	122
BstHHI	GCGC	2 cut(s)	124, 129
BstKTI	GATC	3 cut(s)	407, 528, 799
BstMBI	GATC	3 cut(s)	404, 525, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
BstNI	CCWGG	2 cut(s)	486, 675
BstNSI	RCATGY	2 cut(s)	250, 283
BstSCI	CCNGG	2 cut(s)	484, 673
BstUI	CGCG	1 cut(s)	122
BstV1I	GCAGC	4 cut(s)	101, 136, 334, 802
BstV2I	GAAGAC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	213
BtsCI	GGATG	2 cut(s)	203, 871
BveI	ACCTGC	1 cut(s)	802
Cac8I	GCNNGC	1 cut(s)	344
CciI	TCATGA	2 cut(s)	799, 911
CfoI	GCGC	2 cut(s)	124, 129
Cfr13I	GGNCC	2 cut(s)	114, 147
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	244
CviAII	CATG	8 cut(s)	247, 280, 367, 409, 749, 800, 828, 912
CviQI	GTAC	1 cut(s)	244
DdeI	CTNAG	4 cut(s)	11, 134, 272, 714
DpnI	GATC	3 cut(s)	406, 527, 798
DpnII	GATC	3 cut(s)	404, 525, 796
DraIII	CACNNNGTG	1 cut(s)	862
DriI	GACNNNNNGTC	2 cut(s)	370, 613
Eam1104I	CTCTTC	2 cut(s)	193, 657
Eam1105I	GACNNNNNGTC	2 cut(s)	370, 613
EarI	CTCTTC	2 cut(s)	193, 657
EciI	GGCGGA	2 cut(s)	196, 563
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	2 cut(s)	681, 900
EcoRII	CCWGG	2 cut(s)	484, 673
FaeI	CATG	8 cut(s)	250, 283, 370, 412, 752, 803, 831, 915
FatI	CATG	8 cut(s)	246, 279, 366, 408, 748, 799, 827, 911
FauNDI	CATATG	1 cut(s)	564
FblI	GTMKAC	1 cut(s)	904
Fnu4HI	GCNGC	4 cut(s)	90, 125, 323, 791
FokI	GGATG	2 cut(s)	190, 878
Fsp4HI	GCNGC	4 cut(s)	90, 125, 323, 791
FspBI	CTAG	2 cut(s)	192, 399
GlaI	GCGC	2 cut(s)	123, 128
GluI	GCNGC	4 cut(s)	90, 125, 323, 791
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	284
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	124, 129
Hin1II	CATG	8 cut(s)	250, 283, 370, 412, 752, 803, 831, 915
Hin6I	GCGC	2 cut(s)	122, 127
HinP1I	GCGC	2 cut(s)	122, 127
HindIII	AAGCTT	2 cut(s)	300, 344
HinfI	GANTC	4 cut(s)	52, 61, 179, 502
HpaII	CCGG	1 cut(s)	284
HphI	GGTGA	3 cut(s)	72, 698, 853
Hpy166II	GTNNAC	6 cut(s)	223, 443, 607, 728, 844, 905
Hpy188I	TCNGA	8 cut(s)	36, 66, 339, 469, 661, 715, 756, 763
Hpy188III	TCNNGA	3 cut(s)	538, 800, 912
Hpy8I	GTNNAC	6 cut(s)	223, 443, 607, 728, 844, 905
Hpy99I	CGWCG	4 cut(s)	46, 97, 217, 783
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	2 cut(s)	615, 647
HpyCH4IV	ACGT	3 cut(s)	212, 231, 781
HpyCH4V	TGCA	5 cut(s)	627, 652, 702, 748, 811
HpyF10VI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
HpyF3I	CTNAG	4 cut(s)	11, 134, 272, 714
HpySE526I	ACGT	3 cut(s)	212, 231, 781
Hsp92II	CATG	8 cut(s)	250, 283, 370, 412, 752, 803, 831, 915
HspAI	GCGC	2 cut(s)	122, 127
Kzo9I	GATC	3 cut(s)	404, 525, 796
LguI	GCTCTTC	2 cut(s)	193, 657
LmnI	GCTCC	2 cut(s)	339, 553
Lsp1109I	GCAGC	4 cut(s)	101, 136, 334, 802
LweI	GCATC	2 cut(s)	212, 404
MaeI	CTAG	2 cut(s)	192, 399
MaeII	ACGT	3 cut(s)	212, 231, 781
MaeIII	GTNAC	1 cut(s)	379
MalI	GATC	3 cut(s)	406, 527, 798
MboI	GATC	3 cut(s)	404, 525, 796
MboII	GAAGA	4 cut(s)	180, 210, 502, 674
MflI	RGATCY	1 cut(s)	404
MluCI	AATT	4 cut(s)	311, 452, 583, 680
MlyI	GAGTC	2 cut(s)	55, 188
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	5 cut(s)	105, 544, 709, 832, 883
MseI	TTAA	2 cut(s)	164, 318
MslI	CAYNNNNRTG	1 cut(s)	839
MspCI	CTTAAG	1 cut(s)	317
MspI	CCGG	1 cut(s)	284
MspR9I	CCNGG	2 cut(s)	486, 675
MteI	GCGCNGCGC	1 cut(s)	125
MvaI	CCWGG	2 cut(s)	486, 675
MvnI	CGCG	1 cut(s)	122
MwoI	GCNNNNNNNGC	4 cut(s)	98, 112, 121, 322
NdeI	CATATG	1 cut(s)	564
NdeII	GATC	3 cut(s)	404, 525, 796
NlaIII	CATG	8 cut(s)	250, 283, 370, 412, 752, 803, 831, 915
NmeAIII	GCCGAG	1 cut(s)	82
NspI	RCATGY	2 cut(s)	250, 283
PagI	TCATGA	2 cut(s)	799, 911
PciSI	GCTCTTC	2 cut(s)	193, 657
PcsI	WCGNNNNNNNCGW	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	52, 502
PfoI	TCCNGGA	1 cut(s)	673
PkrI	GCNGC	4 cut(s)	91, 126, 324, 792
PleI	GAGTC	2 cut(s)	55, 187
PpsI	GAGTC	2 cut(s)	55, 187
Psp6I	CCWGG	2 cut(s)	484, 673
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	2 cut(s)	484, 673
PspPI	GGNCC	2 cut(s)	114, 147
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	839
SapI	GCTCTTC	2 cut(s)	193, 657
SaqAI	TTAA	2 cut(s)	164, 318
SatI	GCNGC	4 cut(s)	90, 125, 323, 791
Sau3AI	GATC	3 cut(s)	404, 525, 796
Sau96I	GGNCC	2 cut(s)	114, 147
SchI	GAGTC	2 cut(s)	55, 188
ScrFI	CCNGG	2 cut(s)	486, 675
SfaNI	GCATC	2 cut(s)	212, 404
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
SpeI	ACTAGT	1 cut(s)	398
Sse9I	AATT	4 cut(s)	311, 452, 583, 680
SsiI	CCGC	3 cut(s)	120, 207, 548
SspI	AATATT	1 cut(s)	873
SspMI	CTAG	2 cut(s)	192, 399
StyD4I	CCNGG	2 cut(s)	484, 673
TaaI	ACNGT	2 cut(s)	615, 647
TaiI	ACGT	3 cut(s)	215, 234, 784
TaqI	TCGA	5 cut(s)	41, 431, 524, 537, 778
TasI	AATT	4 cut(s)	311, 452, 583, 680
TatI	WGTACW	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	52, 502
Tru1I	TTAA	2 cut(s)	164, 318
Tru9I	TTAA	2 cut(s)	164, 318
TseI	GCWGC	4 cut(s)	89, 124, 322, 790
TspDTI	ATGAA	3 cut(s)	323, 882, 900
Vha464I	CTTAAG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	147
XapI	RAATTY	2 cut(s)	583, 680
XceI	RCATGY	2 cut(s)	250, 283
XmiI	GTMKAC	1 cut(s)	904
XspI	CTAG	2 cut(s)	192, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.