Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

1155722 .. 1158056

Gene Structure 2335 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAAGTCCTTAGCCAATTCCCAAATGTCCCTCATCTTGATCTTCTTTTTCTTGAGTTCCCTCTTCTTCTTCATCTCCTCCAATGCAGCCACTTTTGAAATCCGTAACGAGTGCCCTTACACTGTCTGGGCAGCCGCCTCTCCTGGAGGAGGCCGTCGCCTGGACCGTGGCCAGAGCTGGAACCTAAACGTTGCCGCGGGGACGAAAATGGCTCGCATATGGGGGCGTACTAATTGCAAATTTGATAATAGTGGCCGCGGCCGTTGTGCCACGGGAGATTGTGGAGCCTTGGAATGCAACGGATGGGGAGTCCCTCCCAACACCTTGGCAGAATATGCCCTTAACCAATTTGGCAACATGGACTTCATCGACATTTCCTTAGTCGACGGCTTCAACATTCCGATGGACTTTAGCCCGACCAGTGGCGGGTGTAGGGGAATCCGGTGCACGGCGGACATCAACGGGCAGTGTCCTGGAGAGCTGAAGGTACCTAGTGGGTGCAATAACCCTTGTACTGTTTTCAAGACTAATGAATATTGCTGCACAAATGGGCAAGGGAGCTGTGGACCGACCAATTTCTCAAAGTTTTTCAAGACTAGGTGCCCGGATGCTTATAGTTATCCTCAGGATGATCCTACGAGCACATTTACATGCCCTGGAGGGACTAACTATAGGGTTGTGTTTTGCCCTGGAGGAAACCCTGGTAATTTCCCTTTGGAGATGGTGAGCGACAGGAATGAGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009817 GO:0042742 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

249

Amino Acids

26.91

Weight (kDa)

5.6

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	36 - 230	7.4e-62	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	2 cut(s)	487, 600
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	2 cut(s)	197, 258
AciI	CCGC	7 cut(s)	135, 195, 197, 256, 258, 426, 452
AclI	AACGTT	1 cut(s)	189
AclWI	GGATC	1 cut(s)	626
AcoI	YGGCCR	3 cut(s)	169, 253, 259
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	229, 489, 514
AfiI	CCNNNNNNNGG	5 cut(s)	149, 160, 422, 426, 448
AgsI	TTSAA	4 cut(s)	98, 394, 523, 592
AjnI	CCWGG	6 cut(s)	142, 159, 472, 655, 688, 700
AluBI	AGCT	3 cut(s)	177, 481, 561
AluI	AGCT	3 cut(s)	177, 481, 561
Alw21I	GWGCWC	2 cut(s)	449, 644
Alw44I	GTGCAC	1 cut(s)	445
AlwI	GGATC	1 cut(s)	626
AoxI	GGCC	4 cut(s)	151, 169, 253, 259
ApaLI	GTGCAC	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	86, 131, 540
ApoI	RAATTY	1 cut(s)	239
Asp718I	GGTACC	1 cut(s)	487
AspS9I	GGNCC	2 cut(s)	163, 566
AsuC2I	CCSGG	1 cut(s)	605
AsuHPI	GGTGA	1 cut(s)	736
AvaII	GGWCC	2 cut(s)	163, 566
AxyI	CCTNAGG	1 cut(s)	624
BaeGI	GKGCMC	3 cut(s)	116, 449, 605
BalI	TGGCCA	1 cut(s)	171
BanI	GGYRCC	2 cut(s)	487, 600
Bbv12I	GWGCWC	2 cut(s)	449, 644
BbvI	GCAGC	3 cut(s)	98, 143, 527
BccI	CCATC	3 cut(s)	297, 397, 715
BceAI	ACGGC	4 cut(s)	138, 246, 403, 465
BciT130I	CCWGG	6 cut(s)	144, 161, 474, 657, 690, 702
BcnI	CCSGG	1 cut(s)	605
BfaI	CTAG	2 cut(s)	492, 597
BfmI	CTRYAG	1 cut(s)	670
BisI	GCNGC	7 cut(s)	87, 132, 135, 195, 256, 259, 541
BlsI	GCNGC	7 cut(s)	88, 133, 136, 196, 257, 260, 542
Bme1390I	CCNGG	7 cut(s)	144, 161, 474, 605, 657, 690, 702
Bme18I	GGWCC	2 cut(s)	163, 566
BmgT120I	GGNCC	2 cut(s)	163, 566
BmiI	GGNNCC	4 cut(s)	182, 286, 489, 602
BmrFI	CCNGG	7 cut(s)	144, 161, 474, 605, 657, 690, 702
BmsI	GCATC	1 cut(s)	598
BpmI	CTGGAG	4 cut(s)	165, 495, 678, 711
Bpu10I	CCTNAGC	1 cut(s)	10
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	605
BsaJI	CCNNGG	9 cut(s)	166, 195, 256, 270, 288, 324, 655, 688, 700
BsaWI	WCCGGW	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	5 cut(s)	149, 160, 422, 426, 448
Bse1I	ACTGG	1 cut(s)	420
Bse21I	CCTNAGG	1 cut(s)	624
BseBI	CCWGG	6 cut(s)	144, 161, 474, 657, 690, 702
BseDI	CCNNGG	9 cut(s)	166, 195, 256, 270, 288, 324, 655, 688, 700
BseGI	GGATG	3 cut(s)	308, 613, 634
BseLI	CCNNNNNNNGG	5 cut(s)	149, 160, 422, 426, 448
BseMII	CTCAG	1 cut(s)	638
BseNI	ACTGG	1 cut(s)	420
BseRI	GAGGAG	2 cut(s)	67, 162
BseSI	GKGCMC	3 cut(s)	116, 449, 605
BseX3I	CGGCCG	1 cut(s)	259
BseXI	GCAGC	3 cut(s)	98, 143, 527
BsgI	GTGCAG	1 cut(s)	526
Bsh1236I	CGCG	2 cut(s)	197, 258
Bsh1285I	CGRYCG	1 cut(s)	262
BshFI	GGCC	4 cut(s)	153, 171, 255, 261
BshNI	GGYRCC	2 cut(s)	487, 600
BsiEI	CGRYCG	1 cut(s)	262
BsiHKAI	GWGCWC	2 cut(s)	449, 644
BsiSI	CCGG	2 cut(s)	442, 605
BslFI	GGGAC	4 cut(s)	13, 214, 296, 676
BslI	CCNNNNNNNGG	5 cut(s)	149, 160, 422, 426, 448
BsmFI	GGGAC	4 cut(s)	13, 214, 296, 676
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	4 cut(s)	153, 171, 255, 261
Bsp1286I	GDGCHC	4 cut(s)	116, 449, 605, 644
Bsp143I	GATC	2 cut(s)	39, 631
BspACI	CCGC	7 cut(s)	135, 195, 197, 256, 258, 426, 452
BspANI	GGCC	4 cut(s)	153, 171, 255, 261
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	2 cut(s)	197, 258
BspLI	GGNNCC	4 cut(s)	182, 286, 489, 602
BspPI	GGATC	1 cut(s)	626
BspT107I	GGYRCC	2 cut(s)	487, 600
BsrI	ACTGG	1 cut(s)	420
BssECI	CCNNGG	9 cut(s)	166, 195, 256, 270, 288, 324, 655, 688, 700
BssMI	GATC	2 cut(s)	39, 631
BssT1I	CCWWGG	2 cut(s)	288, 324
Bst2UI	CCWGG	6 cut(s)	144, 161, 474, 657, 690, 702
Bst4CI	ACNGT	3 cut(s)	124, 167, 517
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	3 cut(s)	10, 379, 624
BstDSI	CCRYGG	4 cut(s)	166, 195, 256, 270
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	3 cut(s)	308, 613, 634
BstFNI	CGCG	2 cut(s)	197, 258
BstKTI	GATC	2 cut(s)	42, 634
BstMBI	GATC	2 cut(s)	39, 631
BstMCI	CGRYCG	1 cut(s)	262
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	6 cut(s)	144, 161, 474, 657, 690, 702
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	7 cut(s)	142, 159, 472, 603, 655, 688, 700
BstSFI	CTRYAG	1 cut(s)	670
BstSLI	GKGCMC	3 cut(s)	116, 449, 605
BstUI	CGCG	2 cut(s)	197, 258
BstV1I	GCAGC	3 cut(s)	98, 143, 527
BstXI	CCANNNNNNTGG	1 cut(s)	325
BstZI	CGGCCG	1 cut(s)	259
Bsu36I	CCTNAGG	1 cut(s)	624
BsuRI	GGCC	4 cut(s)	153, 171, 255, 261
BtgI	CCRYGG	4 cut(s)	166, 195, 256, 270
BtsCI	GGATG	3 cut(s)	308, 613, 634
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	3 cut(s)	120, 427, 473
Cac8I	GCNNGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	163, 566
Cfr42I	CCGCGG	2 cut(s)	198, 259
Csp6I	GTAC	3 cut(s)	228, 488, 513
CviAII	CATG	2 cut(s)	358, 651
CviQI	GTAC	3 cut(s)	228, 488, 513
DdeI	CTNAG	3 cut(s)	10, 379, 624
DpnI	GATC	2 cut(s)	41, 633
DpnII	GATC	2 cut(s)	39, 631
EaeI	YGGCCR	3 cut(s)	169, 253, 259
EagI	CGGCCG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EciI	GGCGGA	1 cut(s)	467
EclXI	CGGCCG	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	288, 324
Eco47I	GGWCC	2 cut(s)	163, 566
Eco52I	CGGCCG	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	624
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	6 cut(s)	142, 159, 472, 655, 688, 700
EcoT14I	CCWWGG	2 cut(s)	288, 324
ErhI	CCWWGG	2 cut(s)	288, 324
FaeI	CATG	2 cut(s)	361, 654
FaiI	YATR	7 cut(s)	218, 220, 336, 359, 615, 652, 672
FaqI	GGGAC	4 cut(s)	13, 214, 296, 676
FatI	CATG	2 cut(s)	357, 650
FauI	CCCGC	2 cut(s)	190, 419
FauNDI	CATATG	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	7 cut(s)	87, 132, 135, 195, 256, 259, 541
FokI	GGATG	3 cut(s)	315, 620, 641
Fsp4HI	GCNGC	7 cut(s)	87, 132, 135, 195, 256, 259, 541
FspBI	CTAG	2 cut(s)	492, 597
GluI	GCNGC	7 cut(s)	87, 132, 135, 195, 256, 259, 541
GsuI	CTGGAG	4 cut(s)	165, 495, 678, 711
HaeIII	GGCC	4 cut(s)	153, 171, 255, 261
HapII	CCGG	2 cut(s)	442, 605
Hin1II	CATG	2 cut(s)	361, 654
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	309, 438
HpaII	CCGG	2 cut(s)	442, 605
HphI	GGTGA	1 cut(s)	736
Hpy166II	GTNNAC	3 cut(s)	385, 447, 566
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	5 cut(s)	37, 52, 523, 592, 626
Hpy8I	GTNNAC	3 cut(s)	385, 447, 566
Hpy99I	CGWCG	2 cut(s)	159, 389
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	3 cut(s)	124, 167, 517
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	6 cut(s)	86, 237, 297, 447, 501, 543
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	10, 379, 624
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	361, 654
KpnI	GGTACC	1 cut(s)	491
KspI	CCGCGG	2 cut(s)	198, 259
Kzo9I	GATC	2 cut(s)	39, 631
LmnI	GCTCC	2 cut(s)	284, 558
Lsp1109I	GCAGC	3 cut(s)	98, 143, 527
LweI	GCATC	1 cut(s)	598
MaeI	CTAG	2 cut(s)	492, 597
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	41, 633
MboI	GATC	2 cut(s)	39, 631
MboII	GAAGA	4 cut(s)	34, 55, 58, 61
MhlI	GDGCHC	4 cut(s)	116, 449, 605, 644
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	6 cut(s)	16, 232, 239, 347, 574, 706
MluNI	TGGCCA	1 cut(s)	171
MlyI	GAGTC	1 cut(s)	318
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	2 cut(s)	401, 649
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	197, 258
MspI	CCGG	2 cut(s)	442, 605
MspR9I	CCNGG	7 cut(s)	144, 161, 474, 605, 657, 690, 702
Mva1269I	GAATGC	1 cut(s)	299
MvaI	CCWGG	6 cut(s)	144, 161, 474, 657, 690, 702
MvnI	CGCG	2 cut(s)	197, 258
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	605
NdeI	CATATG	1 cut(s)	218
NdeII	GATC	2 cut(s)	39, 631
NlaIII	CATG	2 cut(s)	361, 654
NlaIV	GGNNCC	4 cut(s)	182, 286, 489, 602
NspI	RCATGY	1 cut(s)	654
PcsI	WCGNNNNNNNCGW	1 cut(s)	163
PctI	GAATGC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	438
PfoI	TCCNGGA	2 cut(s)	142, 472
PkrI	GCNGC	7 cut(s)	88, 133, 136, 196, 257, 260, 542
PleI	GAGTC	1 cut(s)	317
PpsI	GAGTC	1 cut(s)	317
Psp1406I	AACGTT	1 cut(s)	189
Psp6I	CCWGG	6 cut(s)	142, 159, 472, 655, 688, 700
PspGI	CCWGG	6 cut(s)	142, 159, 472, 655, 688, 700
PspN4I	GGNNCC	4 cut(s)	182, 286, 489, 602
PspPI	GGNCC	2 cut(s)	163, 566
RsaI	GTAC	3 cut(s)	229, 489, 514
RsaNI	GTAC	3 cut(s)	228, 488, 513
RseI	CAYNNNNRTG	2 cut(s)	401, 649
SacII	CCGCGG	2 cut(s)	198, 259
SalI	GTCGAC	1 cut(s)	383
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	7 cut(s)	87, 132, 135, 195, 256, 259, 541
Sau3AI	GATC	2 cut(s)	39, 631
Sau96I	GGNCC	2 cut(s)	163, 566
SchI	GAGTC	1 cut(s)	318
ScrFI	CCNGG	7 cut(s)	144, 161, 474, 605, 657, 690, 702
SduI	GDGCHC	4 cut(s)	116, 449, 605, 644
SetI	ASST	9 cut(s)	179, 186, 192, 326, 483, 489, 493, 563, 602
SfaNI	GCATC	1 cut(s)	598
SfcI	CTRYAG	1 cut(s)	670
Sfr303I	CCGCGG	2 cut(s)	198, 259
SgrBI	CCGCGG	2 cut(s)	198, 259
SinI	GGWCC	2 cut(s)	163, 566
SmiMI	CAYNNNNRTG	2 cut(s)	401, 649
SmlI	CTYRAG	1 cut(s)	52
SmoI	CTYRAG	1 cut(s)	52
Sse9I	AATT	6 cut(s)	16, 232, 239, 347, 574, 706
SsiI	CCGC	7 cut(s)	135, 195, 197, 256, 258, 426, 452
SspI	AATATT	1 cut(s)	536
SspMI	CTAG	2 cut(s)	492, 597
StyD4I	CCNGG	7 cut(s)	142, 159, 472, 603, 655, 688, 700
StyI	CCWWGG	2 cut(s)	288, 324
TaaI	ACNGT	3 cut(s)	124, 167, 517
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	2 cut(s)	369, 384
TaqII	GACCGA	1 cut(s)	583
TasI	AATT	6 cut(s)	16, 232, 239, 347, 574, 706
TatI	WGTACW	1 cut(s)	512
TauI	GCSGC	4 cut(s)	137, 197, 258, 261
TfiI	GAWTC	1 cut(s)	438
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	127, 427, 473
TseI	GCWGC	3 cut(s)	86, 131, 540
TspDTI	ATGAA	4 cut(s)	17, 61, 355, 546
TspGWI	ACGGA	2 cut(s)	92, 315
TspRI	CASTG	3 cut(s)	127, 427, 473
VneI	GTGCAC	1 cut(s)	445
VpaK11BI	GGWCC	2 cut(s)	163, 566
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	239
XceI	RCATGY	1 cut(s)	654
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	492, 597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.