Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000765.1

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

10227 .. 12371

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000765.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

atgcagagagaggatgatatcatcgaaaacgaaattcttgcatcatcaacatgcaacccagaatccttaccgccaatgaaagacaagaatttgaagaatgaagtgggtattgttgaggttgggaggaaggtgttctgtaggccagtactaaatctacgggttggcaaaaaatacccgggttacccaacccggtcgggtcggatttgtgtagctgtgccaggtggcggcaaaccgcttagcagtggccaaatatggactatcaatgtaaatgctggaaccacaagggctcgcatttgggccagaacaaattgcaactttgatgcaaccagacatggaagatgccagactggtgactgtggcggtctcctccaatgtaatggctatggtcaacccccaaacaccctcgccgaatattcactaaaccaatacatgaacatggattttattgatatctctttgattgaagggttcaatgtcccaatggacttcagtcccaccttcaatggctgcactagagatatcagatgcacagaggatataaacggacagtgccccgcgcagttgaaggctcccggtggatgtaacaatccgtgcactgtgttcaaaactgataagtatagttgtaattctggaaactgtggtcctaccgagtactctagatttttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

222

Amino Acids

24.41

Weight (kDa)

8.17

Isoelectric Point (pI)

34.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	557
AciI	CCGC	5 cut(s)	71, 225, 233, 360, 555
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	2 cut(s)	33, 88
AcuI	CTGAAG	1 cut(s)	472
AfaI	GTAC	2 cut(s)	147, 653
AfiI	CCNNNNNNNGG	1 cut(s)	224
AgsI	TTSAA	6 cut(s)	94, 464, 472, 502, 565, 604
AjnI	CCWGG	1 cut(s)	217
AluBI	AGCT	1 cut(s)	212
AluI	AGCT	1 cut(s)	212
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	1 cut(s)	368
Alw44I	GTGCAC	1 cut(s)	592
Ama87I	CYCGRG	1 cut(s)	175
AoxI	GGCC	3 cut(s)	140, 244, 297
ApaLI	GTGCAC	1 cut(s)	592
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	2 cut(s)	33, 88
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	559
AspS9I	GGNCC	2 cut(s)	297, 641
AsuC2I	CCSGG	4 cut(s)	176, 177, 190, 573
AsuHPI	GGTGA	1 cut(s)	362
AvaI	CYCGRG	1 cut(s)	175
AvaII	GGWCC	1 cut(s)	641
BaeGI	GKGCMC	2 cut(s)	554, 596
BalI	TGGCCA	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	494
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BciT130I	CCWGG	1 cut(s)	219
BcnI	CCSGG	4 cut(s)	176, 177, 190, 573
BcoDI	GTCTC	1 cut(s)	368
BfaI	CTAG	2 cut(s)	513, 657
BfmI	CTRYAG	1 cut(s)	136
BisI	GCNGC	2 cut(s)	226, 508
BlpI	GCTNAGC	1 cut(s)	236
BlsI	GCNGC	2 cut(s)	227, 509
BmcAI	AGTACT	2 cut(s)	147, 653
Bme1390I	CCNGG	5 cut(s)	176, 177, 190, 219, 573
Bme18I	GGWCC	1 cut(s)	641
BmeT110I	CYCGRG	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	297, 641
BmiI	GGNNCC	2 cut(s)	277, 570
BmrFI	CCNGG	5 cut(s)	176, 177, 190, 219, 573
BmsI	GCATC	4 cut(s)	50, 310, 329, 515
BoxI	GACNNNNGTC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	236
BpuMI	CCSGG	4 cut(s)	176, 177, 190, 573
BsaI	GGTCTC	1 cut(s)	368
BsaJI	CCNNGG	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	143, 352
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	175
BseGI	GGATG	2 cut(s)	19, 584
BseLI	CCNNNNNNNGG	1 cut(s)	224
BseNI	ACTGG	2 cut(s)	143, 352
BseRI	GAGGAG	1 cut(s)	356
BseSI	GKGCMC	2 cut(s)	554, 596
BseXI	GCAGC	1 cut(s)	494
BsgI	GTGCAG	1 cut(s)	493
Bsh1236I	CGCG	1 cut(s)	557
Bsh1285I	CGRYCG	1 cut(s)	194
BshFI	GGCC	3 cut(s)	142, 246, 299
BsiEI	CGRYCG	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	175
BsiSI	CCGG	3 cut(s)	176, 190, 573
BslFI	GGGAC	2 cut(s)	461, 477
BslI	CCNNNNNNNGG	1 cut(s)	224
BsmAI	GTCTC	1 cut(s)	368
BsmFI	GGGAC	2 cut(s)	461, 477
BsnI	GGCC	3 cut(s)	142, 246, 299
Bso31I	GGTCTC	1 cut(s)	368
BsoBI	CYCGRG	1 cut(s)	175
Bsp1286I	GDGCHC	3 cut(s)	289, 554, 596
Bsp1720I	GCTNAGC	1 cut(s)	236
BspACI	CCGC	5 cut(s)	71, 225, 233, 360, 555
BspANI	GGCC	3 cut(s)	142, 246, 299
BspFNI	CGCG	1 cut(s)	557
BspLI	GGNNCC	2 cut(s)	277, 570
BspTNI	GGTCTC	1 cut(s)	368
BsrI	ACTGG	2 cut(s)	143, 352
BssECI	CCNNGG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	219
Bst4CI	ACNGT	4 cut(s)	356, 549, 598, 638
BstC8I	GCNNGC	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	236
BstEII	GGTNACC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	19, 584
BstFNI	CGCG	1 cut(s)	557
BstHHI	GCGC	1 cut(s)	559
BstMAI	GTCTC	1 cut(s)	368
BstMCI	CGRYCG	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	1 cut(s)	54
BstPAI	GACNNNNGTC	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	179
BstSCI	CCNGG	5 cut(s)	174, 175, 188, 217, 571
BstSFI	CTRYAG	1 cut(s)	136
BstSLI	GKGCMC	2 cut(s)	554, 596
BstUI	CGCG	1 cut(s)	557
BstV1I	GCAGC	1 cut(s)	494
BstXI	CCANNNNNNTGG	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	142, 246, 299
BtsCI	GGATG	2 cut(s)	19, 584
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	3 cut(s)	247, 554, 594
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	559
Cfr13I	GGNCC	2 cut(s)	297, 641
Cfr9I	CCCGGG	1 cut(s)	175
Csp6I	GTAC	2 cut(s)	146, 652
CviAII	CATG	4 cut(s)	51, 332, 430, 436
CviJI	RGCY	8 cut(s)	142, 212, 246, 287, 299, 381, 507, 569
CviKI_1	RGCY	8 cut(s)	142, 212, 246, 287, 299, 381, 507, 569
CviQI	GTAC	2 cut(s)	146, 652
DdeI	CTNAG	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	289
Eco31I	GGTCTC	1 cut(s)	368
Eco32I	GATATC	3 cut(s)	19, 451, 520
Eco47I	GGWCC	1 cut(s)	641
Eco57I	CTGAAG	1 cut(s)	472
Eco88I	CYCGRG	1 cut(s)	175
Eco91I	GGTNACC	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	179
EcoRII	CCWGG	1 cut(s)	217
EcoRV	GATATC	3 cut(s)	19, 451, 520
EcoT38I	GRGCYC	1 cut(s)	289
FaeI	CATG	4 cut(s)	54, 335, 433, 439
FaiI	YATR	8 cut(s)	52, 253, 333, 384, 431, 437, 539, 618
FaqI	GGGAC	2 cut(s)	461, 477
FatI	CATG	4 cut(s)	50, 331, 429, 435
FauI	CCCGC	1 cut(s)	562
Fnu4HI	GCNGC	2 cut(s)	226, 508
FokI	GGATG	2 cut(s)	26, 591
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	226, 508
FspBI	CTAG	2 cut(s)	513, 657
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	2 cut(s)	226, 508
HaeIII	GGCC	3 cut(s)	142, 246, 299
HapII	CCGG	3 cut(s)	176, 190, 573
HhaI	GCGC	1 cut(s)	559
Hin1II	CATG	4 cut(s)	54, 335, 433, 439
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	176, 190, 573
HphI	GGTGA	1 cut(s)	362
Hpy166II	GTNNAC	2 cut(s)	389, 594
Hpy188I	TCNGA	2 cut(s)	201, 524
Hpy188III	TCNNGA	2 cut(s)	630, 657
Hpy8I	GTNNAC	2 cut(s)	389, 594
HpyAV	CCTTC	4 cut(s)	121, 458, 508, 559
HpyCH4III	ACNGT	4 cut(s)	356, 549, 598, 638
HpyCH4V	TGCA	8 cut(s)	4, 41, 54, 312, 323, 510, 528, 594
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	54, 335, 433, 439
HspAI	GCGC	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	574
Lsp1109I	GCAGC	1 cut(s)	494
LweI	GCATC	4 cut(s)	50, 310, 329, 515
MaeI	CTAG	2 cut(s)	513, 657
MaeIII	GTNAC	3 cut(s)	179, 350, 581
MboII	GAAGA	2 cut(s)	106, 348
MhlI	GDGCHC	3 cut(s)	289, 554, 596
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	4 cut(s)	33, 88, 307, 625
MluNI	TGGCCA	1 cut(s)	246
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	6 cut(s)	4, 109, 117, 377, 413, 526
Mox20I	TGGCCA	1 cut(s)	246
MroXI	GAANNNNTTC	1 cut(s)	131
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	1 cut(s)	667
MslI	CAYNNNNRTG	2 cut(s)	49, 434
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	3 cut(s)	176, 190, 573
MspR9I	CCNGG	5 cut(s)	176, 177, 190, 219, 573
MvaI	CCWGG	1 cut(s)	219
MvnI	CGCG	1 cut(s)	557
NciI	CCSGG	4 cut(s)	176, 177, 190, 573
NlaIII	CATG	4 cut(s)	54, 335, 433, 439
NlaIV	GGNNCC	2 cut(s)	277, 570
NmuCI	GTSAC	1 cut(s)	350
NspI	RCATGY	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	227, 509
PshAI	GACNNNNGTC	1 cut(s)	489
Psp6I	CCWGG	1 cut(s)	217
PspEI	GGTNACC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	277, 570
PspPI	GGNCC	2 cut(s)	297, 641
RsaI	GTAC	2 cut(s)	147, 653
RsaNI	GTAC	2 cut(s)	146, 652
RseI	CAYNNNNRTG	2 cut(s)	49, 434
SaqAI	TTAA	1 cut(s)	667
SatI	GCNGC	2 cut(s)	226, 508
Sau96I	GGNCC	2 cut(s)	297, 641
ScaI	AGTACT	2 cut(s)	147, 653
ScrFI	CCNGG	5 cut(s)	176, 177, 190, 219, 573
SduI	GDGCHC	3 cut(s)	289, 554, 596
SetI	ASST	5 cut(s)	120, 132, 214, 223, 500
SfaNI	GCATC	4 cut(s)	50, 310, 329, 515
SfcI	CTRYAG	1 cut(s)	136
SinI	GGWCC	1 cut(s)	641
SmaI	CCCGGG	1 cut(s)	177
SmiMI	CAYNNNNRTG	2 cut(s)	49, 434
Sse9I	AATT	4 cut(s)	33, 88, 307, 625
SsiI	CCGC	5 cut(s)	71, 225, 233, 360, 555
SspI	AATATT	1 cut(s)	413
SspMI	CTAG	2 cut(s)	513, 657
StyD4I	CCNGG	5 cut(s)	174, 175, 188, 217, 571
TaaI	ACNGT	4 cut(s)	356, 549, 598, 638
TaqI	TCGA	1 cut(s)	24
TasI	AATT	4 cut(s)	33, 88, 307, 625
TatI	WGTACW	2 cut(s)	145, 651
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	62
Tru1I	TTAA	1 cut(s)	667
Tru9I	TTAA	1 cut(s)	667
TscAI	CASTG	3 cut(s)	247, 554, 601
TseFI	GTSAC	1 cut(s)	350
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	92, 114, 446
TspGWI	ACGGA	2 cut(s)	558, 579
TspMI	CCCGGG	1 cut(s)	175
TspRI	CASTG	3 cut(s)	247, 554, 601
VneI	GTGCAC	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	641
XapI	RAATTY	2 cut(s)	33, 88
XbaI	TCTAGA	1 cut(s)	656
XceI	RCATGY	1 cut(s)	54
XmaI	CCCGGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	2 cut(s)	513, 657
ZrmI	AGTACT	2 cut(s)	147, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.