Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

51839150 .. 51839764

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAGCTACATTCAATATCCGAAACAACTGTCCCTTCACTGTTTGGGCTGCCGCTGTGCCGGGCGGTGGCAGACAGCTTGGCAATGGCCAAACAAACATGGATACTAAATGTAAACGCCGGAACTAAAGGGGCTCGCATTTGGGCCCGAACAAATTGCAACTTCGATGGAGCAGGACGTGGAAGATGCCAGACTGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCCCAAACACCCTCGCTGAATATGCTCTGAACCAATTCAACAACTTGGATTTCTTTGATATCTCTCTGGTTGATGGGTTCAATGTCCCAATGGACTTTAGTTCCACCTCTAACGGTTGCACTAGGGGTATCAAATGCACGGCGGATATAAACGGACAGTGCCCCGCTCAGTTGAGGGCTCCCGGAGGGTGTAACAACCCATGCACTGTGTTCAAAACTGATCAGTATTGTTGTAATTCTGGAAACTGTGGTCCTACAGACTACTCTAGGTTTTTTAAAAGTCGTTGCCCGGATGCTTATAGTTATCCTAAGGATGATGCAACCAGTACATTTACTTGCCCTGGTGGGACAAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

204

Amino Acids

21.99

Weight (kDa)

7.34

Isoelectric Point (pI)

21.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	30 - 204	2.3e-57	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	404
AciI	CCGC	5 cut(s)	53, 65, 207, 380, 402
AcoI	YGGCCR	1 cut(s)	87
AfaI	GTAC	1 cut(s)	565
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	4 cut(s)	15, 277, 319, 451
AjiI	CACGTC	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	577
AluBI	AGCT	2 cut(s)	7, 78
AluI	AGCT	2 cut(s)	7, 78
Alw26I	GTCTC	1 cut(s)	215
AoxI	GGCC	2 cut(s)	87, 144
ApaI	GGGCCC	1 cut(s)	148
ApeKI	GCWGC	2 cut(s)	4, 49
ArsI	GACNNNNNNTTYG	2 cut(s)	15, 47
Asp700I	GAANNNNTTC	1 cut(s)	272
AspS9I	GGNCC	3 cut(s)	144, 145, 488
AsuC2I	CCSGG	3 cut(s)	62, 420, 527
AsuHPI	GGTGA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	546
BaeGI	GKGCMC	2 cut(s)	148, 401
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	3 cut(s)	136, 148, 418
BbvI	GCAGC	2 cut(s)	16, 36
BccI	CCATC	2 cut(s)	161, 305
BceAI	ACGGC	1 cut(s)	393
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BciT130I	CCWGG	1 cut(s)	579
BciVI	GTATCC	1 cut(s)	96
BclI	TGATCA	1 cut(s)	457
BcnI	CCSGG	3 cut(s)	62, 420, 527
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	2 cut(s)	360, 504
BfmI	CTRYAG	2 cut(s)	492, 592
BfuI	GTATCC	1 cut(s)	96
BisI	GCNGC	3 cut(s)	5, 50, 53
BlsI	GCNGC	3 cut(s)	6, 51, 54
Bme1390I	CCNGG	4 cut(s)	62, 420, 527, 579
Bme18I	GGWCC	1 cut(s)	488
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	3 cut(s)	144, 145, 488
BmiI	GGNNCC	2 cut(s)	146, 417
BmrFI	CCNGG	4 cut(s)	62, 420, 527, 579
BmsI	GCATC	3 cut(s)	176, 520, 544
BpuMI	CCSGG	3 cut(s)	62, 420, 527
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	199, 561
Bse21I	CCTNAGG	1 cut(s)	546
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	579
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	2 cut(s)	535, 556
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	199, 561
BseRI	GAGGAG	1 cut(s)	203
BseSI	GKGCMC	2 cut(s)	148, 401
BseXI	GCAGC	2 cut(s)	16, 36
BshFI	GGCC	2 cut(s)	89, 146
BsiSI	CCGG	4 cut(s)	61, 120, 420, 527
BslFI	GGGAC	3 cut(s)	17, 308, 598
BslI	CCNNNNNNNGG	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	3 cut(s)	17, 308, 598
BsnI	GGCC	2 cut(s)	89, 146
Bso31I	GGTCTC	1 cut(s)	215
Bsp120I	GGGCCC	1 cut(s)	144
Bsp1286I	GDGCHC	4 cut(s)	136, 148, 401, 418
Bsp143I	GATC	1 cut(s)	457
BspACI	CCGC	5 cut(s)	53, 65, 207, 380, 402
BspANI	GGCC	2 cut(s)	89, 146
BspCNI	CTCAG	1 cut(s)	418
BspLI	GGNNCC	2 cut(s)	146, 417
BspTNI	GGTCTC	1 cut(s)	215
BsrBI	CCGCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	90
BsrI	ACTGG	2 cut(s)	199, 561
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	1 cut(s)	457
Bst2UI	CCWGG	1 cut(s)	579
Bst4CI	ACNGT	7 cut(s)	31, 42, 203, 353, 396, 445, 485
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	405, 546
BstF5I	GGATG	2 cut(s)	535, 556
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	579
BstSCI	CCNGG	4 cut(s)	60, 418, 525, 577
BstSFI	CTRYAG	2 cut(s)	492, 592
BstSLI	GKGCMC	2 cut(s)	148, 401
BstV1I	GCAGC	2 cut(s)	16, 36
Bsu36I	CCTNAGG	1 cut(s)	546
BsuI	GTATCC	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	89, 146
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	2 cut(s)	535, 556
BtsIMutI	CAGTG	3 cut(s)	38, 401, 441
Cac8I	GCNNGC	1 cut(s)	136
Cfr13I	GGNCC	3 cut(s)	144, 145, 488
Csp6I	GTAC	1 cut(s)	564
CviAII	CATG	3 cut(s)	99, 438, 612
CviJI	RGCY	8 cut(s)	7, 49, 78, 89, 134, 146, 228, 416
CviKI_1	RGCY	8 cut(s)	7, 49, 78, 89, 134, 146, 228, 416
CviQI	GTAC	1 cut(s)	564
DdeI	CTNAG	2 cut(s)	405, 546
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
DraI	TTTAAA	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	87
EciI	GGCGGA	1 cut(s)	395
Eco24I	GRGCYC	3 cut(s)	136, 148, 418
Eco31I	GGTCTC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	488
Eco81I	CCTNAGG	1 cut(s)	546
EcoRII	CCWGG	1 cut(s)	577
EcoRV	GATATC	1 cut(s)	298
EcoT38I	GRGCYC	3 cut(s)	136, 148, 418
FaeI	CATG	3 cut(s)	102, 441, 615
FaiI	YATR	8 cut(s)	100, 231, 261, 386, 439, 537, 594, 613
FaqI	GGGAC	3 cut(s)	17, 308, 598
FatI	CATG	3 cut(s)	98, 437, 611
FauI	CCCGC	1 cut(s)	409
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	3 cut(s)	5, 50, 53
FokI	GGATG	2 cut(s)	542, 563
FriOI	GRGCYC	3 cut(s)	136, 148, 418
Fsp4HI	GCNGC	3 cut(s)	5, 50, 53
FspBI	CTAG	2 cut(s)	360, 504
GluI	GCNGC	3 cut(s)	5, 50, 53
HaeIII	GGCC	2 cut(s)	89, 146
HapII	CCGG	4 cut(s)	61, 120, 420, 527
Hin1II	CATG	3 cut(s)	102, 441, 615
HincII	GTYRAC	1 cut(s)	236
HindII	GTYRAC	1 cut(s)	236
HpaII	CCGG	4 cut(s)	61, 120, 420, 527
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	115, 236
Hpy188I	TCNGA	2 cut(s)	22, 267
Hpy188III	TCNNGA	1 cut(s)	477
Hpy8I	GTNNAC	2 cut(s)	115, 236
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	7 cut(s)	31, 42, 203, 353, 396, 445, 485
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	6 cut(s)	4, 159, 357, 375, 441, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	2 cut(s)	405, 546
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	3 cut(s)	102, 441, 615
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	1 cut(s)	457
LmnI	GCTCC	2 cut(s)	170, 421
Lsp1109I	GCAGC	2 cut(s)	16, 36
LweI	GCATC	3 cut(s)	176, 520, 544
MaeI	CTAG	2 cut(s)	360, 504
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	197, 428
MalI	GATC	1 cut(s)	459
MbiI	CCGCTC	1 cut(s)	404
MboI	GATC	1 cut(s)	457
MboII	GAAGA	1 cut(s)	195
MhlI	GDGCHC	4 cut(s)	136, 148, 401, 418
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	3 cut(s)	154, 272, 472
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	5 cut(s)	224, 260, 355, 405, 416
Mox20I	TGGCCA	1 cut(s)	89
MroXI	GAANNNNTTC	1 cut(s)	272
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	1 cut(s)	513
Msp20I	TGGCCA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	55
MspI	CCGG	4 cut(s)	61, 120, 420, 527
MspR9I	CCNGG	4 cut(s)	62, 420, 527, 579
MvaI	CCWGG	1 cut(s)	579
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	3 cut(s)	62, 420, 527
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	102, 441, 615
NlaIV	GGNNCC	2 cut(s)	146, 417
NmuCI	GTSAC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	272
PfoI	TCCNGGA	1 cut(s)	418
PkrI	GCNGC	3 cut(s)	6, 51, 54
Psp6I	CCWGG	1 cut(s)	577
PspGI	CCWGG	1 cut(s)	577
PspN4I	GGNNCC	2 cut(s)	146, 417
PspOMI	GGGCCC	1 cut(s)	144
PspPI	GGNCC	3 cut(s)	144, 145, 488
RsaI	GTAC	1 cut(s)	565
RsaNI	GTAC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	3 cut(s)	5, 50, 53
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	3 cut(s)	144, 145, 488
ScrFI	CCNGG	4 cut(s)	62, 420, 527, 579
SduI	GDGCHC	4 cut(s)	136, 148, 401, 418
SetI	ASST	5 cut(s)	9, 80, 181, 347, 509
SfaNI	GCATC	3 cut(s)	176, 520, 544
SfcI	CTRYAG	2 cut(s)	492, 592
SinI	GGWCC	1 cut(s)	488
Sse9I	AATT	3 cut(s)	154, 272, 472
SsiI	CCGC	5 cut(s)	53, 65, 207, 380, 402
SspMI	CTAG	2 cut(s)	360, 504
StyD4I	CCNGG	4 cut(s)	60, 418, 525, 577
TaaI	ACNGT	7 cut(s)	31, 42, 203, 353, 396, 445, 485
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	1 cut(s)	165
TasI	AATT	3 cut(s)	154, 272, 472
TatI	WGTACW	1 cut(s)	563
TauI	GCSGC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	3 cut(s)	45, 401, 448
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	2 cut(s)	4, 49
Tsp45I	GTSAC	1 cut(s)	197
TspGWI	ACGGA	1 cut(s)	405
TspRI	CASTG	3 cut(s)	45, 401, 448
VpaK11BI	GGWCC	1 cut(s)	488
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	2 cut(s)	360, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.