Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

10358296 .. 10359909

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G093500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCCGTATATGGACTGGTGCAAGGCTAATGCTAGATTCGATATCCGAAACAACTGCCCCTTCACAGTCTGGGCAGCAGCCGTGCCAGGCGGTGGACGCCAACTTAATAGAGGCCAAAGTTGGGCCCTAGATGTGCGTGCCGGAACCCAAGGGGCTCGCATTTGGGCCCGAACTGGATGCAGCTTTGATGGAGCCGGACGTGGGAGATGTCAAACAGGTGATTGTGGGGGTGTCCTCCAATGCCAAGCCTATGGCCAACCCCCAAACACCCTAGCTGAGTATGCCCTTAACCAGTACAACAACTTGGATTTCTTTGACATTTCCCTTGTTGATGGCTTCAACGTCCCTATGGACTTTAGCCCCACGTCTAATGGGTGCACCAAGGGCATCAGATGTACCGCTGATATTAATGGGCAGTGTCCTAACCAACTGAGGGCTCAAGGAGGCTGCAACAACCCTTGCACTGTGTTCAGGACTGATAAATATTGCTGCAATTCTGGGAGCTGTGGCCCAACAGACTTGTCTAGGTTTTTTAAGGATCGGTGCCCGAGTGCTTATAGCTACCCGAAGGATGATCCAACGAGCACATTTACATGCCCTGGCGGGACCAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

212

Amino Acids

22.97

Weight (kDa)

8.29

Isoelectric Point (pI)

29.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	543
AccB7I	CCANNNNNTGG	1 cut(s)	92
AciI	CCGC	3 cut(s)	90, 399, 603
AclWI	GGATC	2 cut(s)	546, 569
AcoI	YGGCCR	1 cut(s)	253
AcyI	GRCGYC	1 cut(s)	97
AfaI	GTAC	2 cut(s)	296, 397
AfiI	CCNNNNNNNGG	5 cut(s)	92, 121, 201, 433, 615
AgsI	TTSAA	1 cut(s)	340
AjiI	CACGTC	2 cut(s)	200, 366
AjnI	CCWGG	2 cut(s)	85, 598
AluBI	AGCT	4 cut(s)	183, 275, 504, 561
AluI	AGCT	4 cut(s)	183, 275, 504, 561
Alw21I	GWGCWC	2 cut(s)	380, 587
Alw44I	GTGCAC	1 cut(s)	376
AlwI	GGATC	2 cut(s)	546, 569
Ama87I	CYCGRG	1 cut(s)	547
AoxI	GGCC	5 cut(s)	112, 123, 165, 253, 508
ApaI	GGGCCC	2 cut(s)	127, 169
ApaLI	GTGCAC	1 cut(s)	376
ApeKI	GCWGC	5 cut(s)	74, 77, 180, 447, 489
AseI	ATTAAT	1 cut(s)	408
AspS9I	GGNCC	6 cut(s)	123, 124, 165, 166, 509, 606
AsuHPI	GGTGA	1 cut(s)	230
AvaI	CYCGRG	1 cut(s)	547
AvaII	GGWCC	1 cut(s)	606
BaeGI	GKGCMC	4 cut(s)	127, 169, 380, 548
BalI	TGGCCA	1 cut(s)	255
BanI	GGYRCC	1 cut(s)	543
BanII	GRGCYC	4 cut(s)	127, 157, 169, 439
Bbv12I	GWGCWC	2 cut(s)	380, 587
BbvI	GCAGC	5 cut(s)	86, 89, 192, 434, 476
BccI	CCATC	2 cut(s)	182, 326
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	4 cut(s)	36, 70, 159, 193
BciT130I	CCWGG	2 cut(s)	87, 600
BfaI	CTAG	4 cut(s)	33, 128, 272, 525
BfmI	CTRYAG	1 cut(s)	613
BisI	GCNGC	5 cut(s)	75, 78, 181, 448, 490
BlsI	GCNGC	5 cut(s)	76, 79, 182, 449, 491
Bme1390I	CCNGG	2 cut(s)	87, 600
Bme18I	GGWCC	1 cut(s)	606
BmeT110I	CYCGRG	1 cut(s)	547
BmgBI	CACGTC	2 cut(s)	200, 366
BmgT120I	GGNCC	6 cut(s)	123, 124, 165, 166, 509, 606
BmiI	GGNNCC	6 cut(s)	125, 145, 167, 193, 545, 607
BmrFI	CCNGG	2 cut(s)	87, 600
BmsI	GCATC	2 cut(s)	167, 396
BpuEI	CTTGAG	1 cut(s)	423
BsaHI	GRCGYC	1 cut(s)	97
BsaJI	CCNNGG	3 cut(s)	148, 381, 598
Bsc4I	CCNNNNNNNGG	5 cut(s)	92, 121, 201, 433, 615
Bse1I	ACTGG	3 cut(s)	20, 178, 292
BseBI	CCWGG	2 cut(s)	87, 600
BseDI	CCNNGG	3 cut(s)	148, 381, 598
BseGI	GGATG	2 cut(s)	182, 577
BseLI	CCNNNNNNNGG	5 cut(s)	92, 121, 201, 433, 615
BseMII	CTCAG	2 cut(s)	267, 422
BseNI	ACTGG	3 cut(s)	20, 178, 292
BseSI	GKGCMC	4 cut(s)	127, 169, 380, 548
BseXI	GCAGC	5 cut(s)	86, 89, 192, 434, 476
BshFI	GGCC	5 cut(s)	114, 125, 167, 255, 510
BshNI	GGYRCC	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	380, 587
BsiHKCI	CYCGRG	1 cut(s)	547
BsiSI	CCGG	2 cut(s)	141, 195
BslFI	GGGAC	2 cut(s)	329, 619
BslI	CCNNNNNNNGG	5 cut(s)	92, 121, 201, 433, 615
BsmFI	GGGAC	2 cut(s)	329, 619
BsnI	GGCC	5 cut(s)	114, 125, 167, 255, 510
BsoBI	CYCGRG	1 cut(s)	547
Bsp120I	GGGCCC	2 cut(s)	123, 165
Bsp1286I	GDGCHC	7 cut(s)	127, 157, 169, 380, 439, 548, 587
Bsp143I	GATC	2 cut(s)	538, 574
BspACI	CCGC	3 cut(s)	90, 399, 603
BspANI	GGCC	5 cut(s)	114, 125, 167, 255, 510
BspCNI	CTCAG	2 cut(s)	268, 423
BspLI	GGNNCC	6 cut(s)	125, 145, 167, 193, 545, 607
BspPI	GGATC	2 cut(s)	546, 569
BspT107I	GGYRCC	1 cut(s)	543
BsrI	ACTGG	3 cut(s)	20, 178, 292
BssECI	CCNNGG	3 cut(s)	148, 381, 598
BssMI	GATC	2 cut(s)	538, 574
BssNI	GRCGYC	1 cut(s)	97
BssT1I	CCWWGG	2 cut(s)	148, 381
Bst2UI	CCWGG	2 cut(s)	87, 600
Bst4CI	ACNGT	2 cut(s)	67, 466
BstACI	GRCGYC	1 cut(s)	97
BstC8I	GCNNGC	2 cut(s)	138, 157
BstDEI	CTNAG	2 cut(s)	276, 431
BstF5I	GGATG	2 cut(s)	182, 577
BstKTI	GATC	2 cut(s)	541, 577
BstMBI	GATC	2 cut(s)	538, 574
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 281, 384
BstNI	CCWGG	2 cut(s)	87, 600
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	2 cut(s)	85, 598
BstSFI	CTRYAG	1 cut(s)	613
BstSLI	GKGCMC	4 cut(s)	127, 169, 380, 548
BstV1I	GCAGC	5 cut(s)	86, 89, 192, 434, 476
BstXI	CCANNNNNNTGG	1 cut(s)	251
BsuRI	GGCC	5 cut(s)	114, 125, 167, 255, 510
BtrI	CACGTC	2 cut(s)	200, 366
BtsCI	GGATG	2 cut(s)	182, 577
BtsI	GCAGTG	1 cut(s)	422
BtsIMutI	CAGTG	2 cut(s)	422, 462
Cac8I	GCNNGC	2 cut(s)	138, 157
Cfr13I	GGNCC	6 cut(s)	123, 124, 165, 166, 509, 606
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	295, 396
CviAII	CATG	2 cut(s)	594, 633
CviQI	GTAC	2 cut(s)	295, 396
DdeI	CTNAG	2 cut(s)	276, 431
DpnI	GATC	2 cut(s)	540, 576
DpnII	GATC	2 cut(s)	538, 574
EaeI	YGGCCR	1 cut(s)	253
Eco130I	CCWWGG	2 cut(s)	148, 381
Eco24I	GRGCYC	4 cut(s)	127, 157, 169, 439
Eco32I	GATATC	1 cut(s)	43
Eco47I	GGWCC	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	547
EcoO109I	RGGNCCY	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	85, 598
EcoRV	GATATC	1 cut(s)	43
EcoT14I	CCWWGG	2 cut(s)	148, 381
EcoT38I	GRGCYC	4 cut(s)	127, 157, 169, 439
ErhI	CCWWGG	2 cut(s)	148, 381
FaeI	CATG	2 cut(s)	597, 636
FaiI	YATR	9 cut(s)	9, 11, 252, 282, 350, 558, 595, 615, 634
FaqI	GGGAC	2 cut(s)	329, 619
FatI	CATG	2 cut(s)	593, 632
FauI	CCCGC	1 cut(s)	596
Fnu4HI	GCNGC	5 cut(s)	75, 78, 181, 448, 490
FokI	GGATG	2 cut(s)	189, 584
FriOI	GRGCYC	4 cut(s)	127, 157, 169, 439
Fsp4HI	GCNGC	5 cut(s)	75, 78, 181, 448, 490
FspBI	CTAG	4 cut(s)	33, 128, 272, 525
GluI	GCNGC	5 cut(s)	75, 78, 181, 448, 490
HaeIII	GGCC	5 cut(s)	114, 125, 167, 255, 510
HapII	CCGG	2 cut(s)	141, 195
HgaI	GACGC	1 cut(s)	105
Hin1I	GRCGYC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	597, 636
HinfI	GANTC	1 cut(s)	36
HpaII	CCGG	2 cut(s)	141, 195
HphI	GGTGA	1 cut(s)	230
Hpy166II	GTNNAC	2 cut(s)	95, 378
Hpy188I	TCNGA	2 cut(s)	47, 392
Hpy188III	TCNNGA	1 cut(s)	472
Hpy8I	GTNNAC	2 cut(s)	95, 378
HpyAV	CCTTC	2 cut(s)	70, 562
HpyCH4III	ACNGT	2 cut(s)	67, 466
HpyCH4IV	ACGT	3 cut(s)	199, 342, 365
HpyCH4V	TGCA	6 cut(s)	21, 180, 378, 450, 462, 492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 281, 384
HpyF3I	CTNAG	2 cut(s)	276, 431
HpySE526I	ACGT	3 cut(s)	199, 342, 365
Hsp92I	GRCGYC	1 cut(s)	97
Hsp92II	CATG	2 cut(s)	597, 636
Kzo9I	GATC	2 cut(s)	538, 574
LmnI	GCTCC	2 cut(s)	191, 501
Lsp1109I	GCAGC	5 cut(s)	86, 89, 192, 434, 476
LweI	GCATC	2 cut(s)	167, 396
MaeI	CTAG	4 cut(s)	33, 128, 272, 525
MaeII	ACGT	3 cut(s)	199, 342, 365
MalI	GATC	2 cut(s)	540, 576
MboI	GATC	2 cut(s)	538, 574
MhlI	GDGCHC	7 cut(s)	127, 157, 169, 380, 439, 548, 587
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	1 cut(s)	255
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	4 cut(s)	104, 245, 426, 437
Mox20I	TGGCCA	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	4 cut(s)	105, 288, 408, 534
MslI	CAYNNNNRTG	1 cut(s)	592
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	401
MspI	CCGG	2 cut(s)	141, 195
MspR9I	CCNGG	2 cut(s)	87, 600
MvaI	CCWGG	2 cut(s)	87, 600
MwoI	GCNNNNNNNGC	3 cut(s)	96, 281, 384
NdeII	GATC	2 cut(s)	538, 574
NlaIII	CATG	2 cut(s)	597, 636
NlaIV	GGNNCC	6 cut(s)	125, 145, 167, 193, 545, 607
NspI	RCATGY	1 cut(s)	597
PfeI	GAWTC	1 cut(s)	36
PflMI	CCANNNNNTGG	1 cut(s)	92
PkrI	GCNGC	5 cut(s)	76, 79, 182, 449, 491
PshBI	ATTAAT	1 cut(s)	408
Psp6I	CCWGG	2 cut(s)	85, 598
PspGI	CCWGG	2 cut(s)	85, 598
PspN4I	GGNNCC	6 cut(s)	125, 145, 167, 193, 545, 607
PspOMI	GGGCCC	2 cut(s)	123, 165
PspPI	GGNCC	6 cut(s)	123, 124, 165, 166, 509, 606
RsaI	GTAC	2 cut(s)	296, 397
RsaNI	GTAC	2 cut(s)	295, 396
RseI	CAYNNNNRTG	1 cut(s)	592
SaqAI	TTAA	4 cut(s)	105, 288, 408, 534
SatI	GCNGC	5 cut(s)	75, 78, 181, 448, 490
Sau3AI	GATC	2 cut(s)	538, 574
Sau96I	GGNCC	6 cut(s)	123, 124, 165, 166, 509, 606
ScrFI	CCNGG	2 cut(s)	87, 600
SduI	GDGCHC	7 cut(s)	127, 157, 169, 380, 439, 548, 587
SetI	ASST	9 cut(s)	185, 202, 220, 277, 345, 368, 506, 530, 563
SfaNI	GCATC	2 cut(s)	167, 396
SfcI	CTRYAG	1 cut(s)	613
SinI	GGWCC	1 cut(s)	606
SmiMI	CAYNNNNRTG	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	438
SmoI	CTYRAG	1 cut(s)	438
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	90, 399, 603
SspI	AATATT	1 cut(s)	485
SspMI	CTAG	4 cut(s)	33, 128, 272, 525
StyD4I	CCNGG	2 cut(s)	85, 598
StyI	CCWWGG	2 cut(s)	148, 381
TaaI	ACNGT	2 cut(s)	67, 466
TaiI	ACGT	3 cut(s)	202, 345, 368
TaqI	TCGA	1 cut(s)	39
TasI	AATT	1 cut(s)	493
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	36
Tru1I	TTAA	4 cut(s)	105, 288, 408, 534
Tru9I	TTAA	4 cut(s)	105, 288, 408, 534
TscAI	CASTG	2 cut(s)	422, 469
TseI	GCWGC	5 cut(s)	74, 77, 180, 447, 489
TspRI	CASTG	2 cut(s)	422, 469
Van91I	CCANNNNNTGG	1 cut(s)	92
VneI	GTGCAC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	606
VspI	ATTAAT	1 cut(s)	408
XceI	RCATGY	1 cut(s)	597
XspI	CTAG	4 cut(s)	33, 128, 272, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.