Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

53406417 .. 53407367

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003839

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAGATTCTACAAAAGCCTCTCAGTTTTGTCCATCCTATGGATCACCACCCTTTGCTTTGCTCCATCAACCATCAATGCAGCCAGATTCGATATCCGAAACAACTGCCCCTTCACTGTCTGGGCCGCCGCGGTGCCAGGCGGCGGCAGGCAACTTAACGGGGGAGAATCTTGGCCCCTAGATGTGAACGCGGGCACTACAGGAGGCCGCGTTTGGGCACGAACTGGATGCAACTTTGATGCATCCGGACATGGCAGCTGTCAGACTGGTGACTGTGGCGGCCTCCTCGAATGCCAAGCCTACGGTCAACCCCCAAACACCCTAGCCGAATTTGGGCTTAACCAGTTCAACAACTTGGATTTCATCGACATCTCCCTCGTCGATGGGTTTAATGTCGCCATGGACTTTAGTCCCACTTCTCCTTGTGAGCGTGGGATCCAGTGTACGGCAGATATCAACGGGCAGTGCCCTAATGAGCTGAAAGCTCCAGGTGGCTGTAACAATCCATGTACTGTGTTCAAGACTGATGAGTATTGCTGCAATTCTGGGAGCTGCGGTCCCACAAATTTCTCTAGGTTTTTCAAGGAGCGGTGCCCAGATGCTTACAGTTACCCTAAGGATGATGCAACCAGCACTTTTACTTGCCCTGGTGGGACTAACTACAAGGTTGTGTTCTGCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

228

Amino Acids

24.39

Weight (kDa)

4.81

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	34 - 227	8.8e-62	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	133, 591
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccBSI	CCGCTC	1 cut(s)	589
AccII	CGCG	3 cut(s)	131, 191, 210
AccIII	TCCGGA	1 cut(s)	245
AclWI	GGATC	3 cut(s)	50, 430, 443
AcsI	RAATTY	2 cut(s)	329, 565
AfaI	GTAC	2 cut(s)	445, 511
AfiI	CCNNNNNNNGG	5 cut(s)	39, 143, 214, 333, 445
AgsI	TTSAA	3 cut(s)	349, 520, 583
AjnI	CCWGG	3 cut(s)	136, 487, 646
AluBI	AGCT	4 cut(s)	258, 478, 485, 552
AluI	AGCT	4 cut(s)	258, 478, 485, 552
AlwI	GGATC	3 cut(s)	50, 430, 443
Aor13HI	TCCGGA	1 cut(s)	245
AoxI	GGCC	4 cut(s)	123, 173, 205, 280
ApeKI	GCWGC	4 cut(s)	80, 255, 537, 552
ApoI	RAATTY	2 cut(s)	329, 565
AspS9I	GGNCC	3 cut(s)	123, 174, 557
AsuHPI	GGTGA	2 cut(s)	37, 281
AvaII	GGWCC	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	615
BaeGI	GKGCMC	4 cut(s)	197, 220, 470, 596
BamHI	GGATCC	1 cut(s)	435
BanI	GGYRCC	2 cut(s)	133, 591
BbvI	GCAGC	4 cut(s)	92, 267, 524, 539
BccI	CCATC	4 cut(s)	41, 73, 80, 377
BceAI	ACGGC	1 cut(s)	462
BcgI	CGANNNNNNTGC	4 cut(s)	87, 121, 210, 244
BciT130I	CCWGG	3 cut(s)	138, 489, 648
BfaI	CTAG	3 cut(s)	179, 323, 573
BfmI	CTRYAG	1 cut(s)	198
Bme1390I	CCNGG	3 cut(s)	138, 489, 648
Bme18I	GGWCC	1 cut(s)	557
BmgT120I	GGNCC	3 cut(s)	123, 174, 557
BmiI	GGNNCC	5 cut(s)	135, 176, 437, 559, 593
BmrFI	CCNGG	3 cut(s)	138, 489, 648
BmsI	GCATC	5 cut(s)	218, 229, 251, 589, 613
BoxI	GACNNNNGTC	1 cut(s)	408
BpmI	CTGGAG	1 cut(s)	471
BsaJI	CCNNGG	3 cut(s)	129, 399, 646
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	4 cut(s)	195, 225, 541, 571
Bsc4I	CCNNNNNNNGG	5 cut(s)	39, 143, 214, 333, 445
Bse1I	ACTGG	4 cut(s)	229, 271, 343, 439
Bse21I	CCTNAGG	1 cut(s)	615
BseAI	TCCGGA	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	138, 489, 648
BseDI	CCNNGG	3 cut(s)	129, 399, 646
BseGI	GGATG	4 cut(s)	33, 233, 242, 625
BseLI	CCNNNNNNNGG	5 cut(s)	39, 143, 214, 333, 445
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	4 cut(s)	229, 271, 343, 439
BseRI	GAGGAG	1 cut(s)	275
BseSI	GKGCMC	4 cut(s)	197, 220, 470, 596
BseXI	GCAGC	4 cut(s)	92, 267, 524, 539
Bsh1236I	CGCG	3 cut(s)	131, 191, 210
BshFI	GGCC	4 cut(s)	125, 175, 207, 282
BshNI	GGYRCC	2 cut(s)	133, 591
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	3 cut(s)	396, 543, 667
BslI	CCNNNNNNNGG	5 cut(s)	39, 143, 214, 333, 445
BsmFI	GGGAC	3 cut(s)	396, 543, 667
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	4 cut(s)	125, 175, 207, 282
Bsp1286I	GDGCHC	4 cut(s)	197, 220, 470, 596
Bsp13I	TCCGGA	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	42, 435
Bsp19I	CCATGG	1 cut(s)	399
BspANI	GGCC	4 cut(s)	125, 175, 207, 282
BspCNI	CTCAG	1 cut(s)	35
BspEI	TCCGGA	1 cut(s)	245
BspFNI	CGCG	3 cut(s)	131, 191, 210
BspLI	GGNNCC	5 cut(s)	135, 176, 437, 559, 593
BspPI	GGATC	3 cut(s)	50, 430, 443
BspT107I	GGYRCC	2 cut(s)	133, 591
BsrBI	CCGCTC	1 cut(s)	589
BsrI	ACTGG	4 cut(s)	229, 271, 343, 439
BssECI	CCNNGG	3 cut(s)	129, 399, 646
BssMI	GATC	2 cut(s)	42, 435
BssT1I	CCWWGG	1 cut(s)	399
Bst2UI	CCWGG	3 cut(s)	138, 489, 648
Bst4CI	ACNGT	5 cut(s)	118, 275, 305, 514, 608
BstC8I	GCNNGC	2 cut(s)	149, 193
BstDEI	CTNAG	2 cut(s)	22, 615
BstDSI	CCRYGG	2 cut(s)	129, 399
BstF5I	GGATG	4 cut(s)	33, 233, 242, 625
BstFNI	CGCG	3 cut(s)	131, 191, 210
BstKTI	GATC	2 cut(s)	45, 438
BstMBI	GATC	2 cut(s)	42, 435
BstNI	CCWGG	3 cut(s)	138, 489, 648
BstPAI	GACNNNNGTC	1 cut(s)	408
BstSCI	CCNGG	3 cut(s)	136, 487, 646
BstSFI	CTRYAG	1 cut(s)	198
BstSLI	GKGCMC	4 cut(s)	197, 220, 470, 596
BstUI	CGCG	3 cut(s)	131, 191, 210
BstV1I	GCAGC	4 cut(s)	92, 267, 524, 539
BstX2I	RGATCY	1 cut(s)	435
BstYI	RGATCY	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	615
BsuRI	GGCC	4 cut(s)	125, 175, 207, 282
BtgI	CCRYGG	2 cut(s)	129, 399
BtsCI	GGATG	4 cut(s)	33, 233, 242, 625
BtsI	GCAGTG	1 cut(s)	470
BtsIMutI	CAGTG	3 cut(s)	114, 446, 470
Cac8I	GCNNGC	2 cut(s)	149, 193
Cfr13I	GGNCC	3 cut(s)	123, 174, 557
Cfr42I	CCGCGG	1 cut(s)	132
Csp6I	GTAC	2 cut(s)	444, 510
CviAII	CATG	3 cut(s)	251, 400, 507
CviQI	GTAC	2 cut(s)	444, 510
DdeI	CTNAG	2 cut(s)	22, 615
DpnI	GATC	2 cut(s)	44, 437
DpnII	GATC	2 cut(s)	42, 435
Eco130I	CCWWGG	1 cut(s)	399
Eco32I	GATATC	2 cut(s)	94, 454
Eco47I	GGWCC	1 cut(s)	557
Eco81I	CCTNAGG	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	136, 487, 646
EcoRV	GATATC	2 cut(s)	94, 454
EcoT14I	CCWWGG	1 cut(s)	399
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	399
FaeI	CATG	3 cut(s)	254, 403, 510
FaiI	YATR	5 cut(s)	40, 252, 401, 508, 682
FaqI	GGGAC	3 cut(s)	396, 543, 667
FatI	CATG	3 cut(s)	250, 399, 506
FauI	CCCGC	1 cut(s)	184
FokI	GGATG	4 cut(s)	20, 229, 240, 632
FspBI	CTAG	3 cut(s)	179, 323, 573
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	4 cut(s)	125, 175, 207, 282
HapII	CCGG	1 cut(s)	246
Hin1II	CATG	3 cut(s)	254, 403, 510
HincII	GTYRAC	1 cut(s)	308
HindII	GTYRAC	1 cut(s)	308
HinfI	GANTC	3 cut(s)	6, 87, 167
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	2 cut(s)	37, 281
Hpy166II	GTNNAC	3 cut(s)	187, 308, 444
Hpy188I	TCNGA	2 cut(s)	98, 264
Hpy188III	TCNNGA	2 cut(s)	246, 520
Hpy8I	GTNNAC	3 cut(s)	187, 308, 444
Hpy99I	CGWCG	1 cut(s)	383
HpyAV	CCTTC	1 cut(s)	121
HpyCH4III	ACNGT	5 cut(s)	118, 275, 305, 514, 608
HpyCH4V	TGCA	5 cut(s)	80, 231, 242, 540, 626
HpyF3I	CTNAG	2 cut(s)	22, 615
Hsp92II	CATG	3 cut(s)	254, 403, 510
Kpn2I	TCCGGA	1 cut(s)	245
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	42, 435
LmnI	GCTCC	4 cut(s)	67, 490, 549, 586
Lsp1109I	GCAGC	4 cut(s)	92, 267, 524, 539
LweI	GCATC	5 cut(s)	218, 229, 251, 589, 613
MaeI	CTAG	3 cut(s)	179, 323, 573
MaeIII	GTNAC	3 cut(s)	269, 497, 608
MalI	GATC	2 cut(s)	44, 437
MbiI	CCGCTC	1 cut(s)	589
MboI	GATC	2 cut(s)	42, 435
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	4 cut(s)	197, 220, 470, 596
MluCI	AATT	3 cut(s)	329, 541, 565
MnlI	CCTC	5 cut(s)	29, 197, 293, 296, 386
Mph1103I	ATGCAT	1 cut(s)	244
MroI	TCCGGA	1 cut(s)	245
MseI	TTAA	3 cut(s)	156, 339, 390
MspA1I	CMGCKG	2 cut(s)	131, 258
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	3 cut(s)	138, 489, 648
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	3 cut(s)	138, 489, 648
MvnI	CGCG	3 cut(s)	131, 191, 210
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	42, 435
NlaIII	CATG	3 cut(s)	254, 403, 510
NlaIV	GGNNCC	5 cut(s)	135, 176, 437, 559, 593
NmuCI	GTSAC	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	244
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	6, 87, 167
PflMI	CCANNNNNTGG	1 cut(s)	39
PshAI	GACNNNNGTC	1 cut(s)	408
Psp6I	CCWGG	3 cut(s)	136, 487, 646
PspGI	CCWGG	3 cut(s)	136, 487, 646
PspN4I	GGNNCC	5 cut(s)	135, 176, 437, 559, 593
PspPI	GGNCC	3 cut(s)	123, 174, 557
PsuI	RGATCY	1 cut(s)	435
PvuII	CAGCTG	1 cut(s)	258
RsaI	GTAC	2 cut(s)	445, 511
RsaNI	GTAC	2 cut(s)	444, 510
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	156, 339, 390
Sau3AI	GATC	2 cut(s)	42, 435
Sau96I	GGNCC	3 cut(s)	123, 174, 557
ScrFI	CCNGG	3 cut(s)	138, 489, 648
SduI	GDGCHC	4 cut(s)	197, 220, 470, 596
SetI	ASST	7 cut(s)	260, 480, 487, 493, 554, 578, 669
SfaNI	GCATC	5 cut(s)	218, 229, 251, 589, 613
SfcI	CTRYAG	1 cut(s)	198
Sfr303I	CCGCGG	1 cut(s)	132
SgrBI	CCGCGG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	557
Sse9I	AATT	3 cut(s)	329, 541, 565
SspMI	CTAG	3 cut(s)	179, 323, 573
StyD4I	CCNGG	3 cut(s)	136, 487, 646
StyI	CCWWGG	1 cut(s)	399
TaaI	ACNGT	5 cut(s)	118, 275, 305, 514, 608
TaqI	TCGA	4 cut(s)	90, 288, 366, 381
TasI	AATT	3 cut(s)	329, 541, 565
TatI	WGTACW	1 cut(s)	509
TauI	GCSGC	6 cut(s)	128, 131, 144, 147, 210, 282
TfiI	GAWTC	3 cut(s)	6, 87, 167
Tru1I	TTAA	3 cut(s)	156, 339, 390
Tru9I	TTAA	3 cut(s)	156, 339, 390
TscAI	CASTG	3 cut(s)	121, 446, 470
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	4 cut(s)	80, 255, 537, 552
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	1 cut(s)	352
TspRI	CASTG	3 cut(s)	121, 446, 470
Van91I	CCANNNNNTGG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	2 cut(s)	329, 565
XspI	CTAG	3 cut(s)	179, 323, 573
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.