Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8259601.1

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 513

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8259601.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atactaaatgtaaacgccggaactaaaggggctcgcatttgggcccgaacaaattgcaacttcgatggagcaggacgtggaagatgccagactggtgactgtggcggtctcctccaatgtcaaggctatggtcaacccccaaacaccctcgccgaatatgcactgaaccaattcaacaacttggatttctttgatatctctctggttgatgggttcaatgtcccaatggactttagtcccacctctaacggttgcactaggggtatcaaatgcacggcggatataaacggacagtgccccgctcagttgagggctcccggagggtgtaacaacccatgcactgtgttcaaaactgatcagtattgttgtaattctggaaactgtggtcctacagactattctaggttttttaaaagtcgttgcccagatgcttatagttaccctaaggatgatgcaaccagtacatttacttgcccgggtggtacaaactatagggttgtgttctgcccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

170

Amino Acids

18.32

Weight (kDa)

7.5

Isoelectric Point (pI)

19.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	302
AciI	CCGC	3 cut(s)	105, 278, 300
AfaI	GTAC	2 cut(s)	463, 484
AgsI	TTSAA	3 cut(s)	175, 217, 349
AjiI	CACGTC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	113
Ama87I	CYCGRG	1 cut(s)	475
AoxI	GGCC	1 cut(s)	42
ApaI	GGGCCC	1 cut(s)	46
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	42, 43, 386
AsuC2I	CCSGG	3 cut(s)	318, 476, 477
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	475
AvaII	GGWCC	1 cut(s)	386
AxyI	CCTNAGG	1 cut(s)	444
BaeGI	GKGCMC	2 cut(s)	46, 299
BanII	GRGCYC	3 cut(s)	34, 46, 316
BccI	CCATC	2 cut(s)	59, 203
BceAI	ACGGC	1 cut(s)	291
BcgI	CGANNNNNNTGC	2 cut(s)	36, 70
BclI	TGATCA	1 cut(s)	355
BcnI	CCSGG	3 cut(s)	318, 476, 477
BcoDI	GTCTC	1 cut(s)	113
BfaI	CTAG	2 cut(s)	258, 402
BfmI	CTRYAG	2 cut(s)	390, 490
Bme1390I	CCNGG	3 cut(s)	318, 476, 477
Bme18I	GGWCC	1 cut(s)	386
BmeT110I	CYCGRG	1 cut(s)	475
BmgBI	CACGTC	1 cut(s)	77
BmgT120I	GGNCC	3 cut(s)	42, 43, 386
BmiI	GGNNCC	2 cut(s)	44, 315
BmrFI	CCNGG	3 cut(s)	318, 476, 477
BmsI	GCATC	3 cut(s)	74, 418, 442
BoxI	GACNNNNGTC	1 cut(s)	234
BpuMI	CCSGG	3 cut(s)	318, 476, 477
BsaI	GGTCTC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	475
Bse1I	ACTGG	2 cut(s)	97, 459
Bse21I	CCTNAGG	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	454
BseMII	CTCAG	1 cut(s)	317
BseNI	ACTGG	2 cut(s)	97, 459
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	2 cut(s)	46, 299
BshFI	GGCC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	475
BsiSI	CCGG	3 cut(s)	18, 318, 476
BslFI	GGGAC	2 cut(s)	206, 222
BsmAI	GTCTC	1 cut(s)	113
BsmFI	GGGAC	2 cut(s)	206, 222
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	113
BsoBI	CYCGRG	1 cut(s)	475
Bsp120I	GGGCCC	1 cut(s)	42
Bsp1286I	GDGCHC	4 cut(s)	34, 46, 299, 316
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	3 cut(s)	105, 278, 300
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	1 cut(s)	316
BspLI	GGNNCC	2 cut(s)	44, 315
BspTNI	GGTCTC	1 cut(s)	113
BsrBI	CCGCTC	1 cut(s)	302
BsrI	ACTGG	2 cut(s)	97, 459
BssECI	CCNNGG	1 cut(s)	475
BssMI	GATC	1 cut(s)	355
Bst4CI	ACNGT	5 cut(s)	101, 251, 294, 343, 383
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	303, 444
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	1 cut(s)	358
BstMAI	GTCTC	1 cut(s)	113
BstMBI	GATC	1 cut(s)	355
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstPAI	GACNNNNGTC	1 cut(s)	234
BstSCI	CCNGG	3 cut(s)	316, 474, 475
BstSFI	CTRYAG	2 cut(s)	390, 490
BstSLI	GKGCMC	2 cut(s)	46, 299
Bsu36I	CCTNAGG	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	77
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	3 cut(s)	161, 299, 339
Cac8I	GCNNGC	1 cut(s)	34
Cfr13I	GGNCC	3 cut(s)	42, 43, 386
Cfr9I	CCCGGG	1 cut(s)	475
Csp6I	GTAC	2 cut(s)	462, 483
CviAII	CATG	2 cut(s)	336, 510
CviJI	RGCY	4 cut(s)	32, 44, 126, 314
CviKI_1	RGCY	4 cut(s)	32, 44, 126, 314
CviQI	GTAC	2 cut(s)	462, 483
DdeI	CTNAG	2 cut(s)	303, 444
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
DraI	TTTAAA	1 cut(s)	412
EciI	GGCGGA	1 cut(s)	293
Eco24I	GRGCYC	3 cut(s)	34, 46, 316
Eco31I	GGTCTC	1 cut(s)	113
Eco32I	GATATC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	444
Eco88I	CYCGRG	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	196
EcoT38I	GRGCYC	3 cut(s)	34, 46, 316
FaeI	CATG	2 cut(s)	339, 513
FaiI	YATR	7 cut(s)	129, 159, 284, 337, 435, 492, 511
FaqI	GGGAC	2 cut(s)	206, 222
FatI	CATG	2 cut(s)	335, 509
FauI	CCCGC	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	355
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	3 cut(s)	34, 46, 316
FspBI	CTAG	2 cut(s)	258, 402
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	3 cut(s)	18, 318, 476
Hin1II	CATG	2 cut(s)	339, 513
HincII	GTYRAC	1 cut(s)	134
HindII	GTYRAC	1 cut(s)	134
HpaII	CCGG	3 cut(s)	18, 318, 476
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	2 cut(s)	13, 134
Hpy188III	TCNNGA	1 cut(s)	375
Hpy8I	GTNNAC	2 cut(s)	13, 134
HpyCH4III	ACNGT	5 cut(s)	101, 251, 294, 343, 383
HpyCH4IV	ACGT	1 cut(s)	76
HpyCH4V	TGCA	6 cut(s)	57, 161, 255, 273, 339, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	303, 444
HpySE526I	ACGT	1 cut(s)	76
Hsp92II	CATG	2 cut(s)	339, 513
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
LmnI	GCTCC	2 cut(s)	68, 319
LweI	GCATC	3 cut(s)	74, 418, 442
MaeI	CTAG	2 cut(s)	258, 402
MaeII	ACGT	1 cut(s)	76
MaeIII	GTNAC	3 cut(s)	95, 326, 437
MalI	GATC	1 cut(s)	357
MbiI	CCGCTC	1 cut(s)	302
MboI	GATC	1 cut(s)	355
MboII	GAAGA	1 cut(s)	93
MhlI	GDGCHC	4 cut(s)	34, 46, 299, 316
MluCI	AATT	3 cut(s)	52, 170, 370
MnlI	CCTC	5 cut(s)	122, 158, 253, 303, 314
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	411
MspI	CCGG	3 cut(s)	18, 318, 476
MspR9I	CCNGG	3 cut(s)	318, 476, 477
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	3 cut(s)	318, 476, 477
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	2 cut(s)	339, 513
NlaIV	GGNNCC	2 cut(s)	44, 315
NmuCI	GTSAC	1 cut(s)	95
PdmI	GAANNNNTTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	316
PshAI	GACNNNNGTC	1 cut(s)	234
PspN4I	GGNNCC	2 cut(s)	44, 315
PspOMI	GGGCCC	1 cut(s)	42
PspPI	GGNCC	3 cut(s)	42, 43, 386
RsaI	GTAC	2 cut(s)	463, 484
RsaNI	GTAC	2 cut(s)	462, 483
SaqAI	TTAA	1 cut(s)	411
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	3 cut(s)	42, 43, 386
ScrFI	CCNGG	3 cut(s)	318, 476, 477
SduI	GDGCHC	4 cut(s)	34, 46, 299, 316
SetI	ASST	3 cut(s)	79, 245, 407
SfaNI	GCATC	3 cut(s)	74, 418, 442
SfcI	CTRYAG	2 cut(s)	390, 490
SinI	GGWCC	1 cut(s)	386
SmaI	CCCGGG	1 cut(s)	477
Sse9I	AATT	3 cut(s)	52, 170, 370
SsiI	CCGC	3 cut(s)	105, 278, 300
SspMI	CTAG	2 cut(s)	258, 402
StyD4I	CCNGG	3 cut(s)	316, 474, 475
TaaI	ACNGT	5 cut(s)	101, 251, 294, 343, 383
TaiI	ACGT	1 cut(s)	79
TaqI	TCGA	1 cut(s)	63
TasI	AATT	3 cut(s)	52, 170, 370
TatI	WGTACW	1 cut(s)	461
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TscAI	CASTG	3 cut(s)	168, 299, 346
TseFI	GTSAC	1 cut(s)	95
Tsp45I	GTSAC	1 cut(s)	95
TspGWI	ACGGA	1 cut(s)	303
TspMI	CCCGGG	1 cut(s)	475
TspRI	CASTG	3 cut(s)	168, 299, 346
VpaK11BI	GGWCC	1 cut(s)	386
XmaI	CCCGGG	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	258, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.