Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

8673633 .. 8674310

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1064400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGCCTCCTTAAAAGCCTCTTACTTTTCTCCATCCTATGTGCCATTCTCTTCTTTGCATCAACTAATGCAGCTCGATTCGACATCCAAAACAACTGTGCCTACACTGTATGGGCAGCTGCTGTGCCAGGCGGTGGTCGCCAACTCGACGGAGGCCAATCCTGGGCCATAGATGTAAGTGCCGGACGTGGCCAATGCCAAACAGGTGACTGTGGGGGTGTCCTCGAATGCCAAGGCTATGGTCAACCACCAAACACCCTAGCTGAATATGCCCTTAATCAATATAACAACTTGGATTTCTTTGACATTTCTCTTGTTGATGGGTTTAATGTACCTATGGACTTTAGTCCCACGTCTGGTGGGTGCACTAAGGGGATTAGGTGCACGGCTGATATTAACGGGCAGTGCCCTGACCAACTGAAGGCTCCAGGAGGGTGCAACAACCCTTGCACCGTGTTCAAGACTGATCAATATTGTAGCAATTCTGGAACTTGTGACCCTACAGACTTCTCTAGGTTTTTTAAGAATCTGTGCCCGGATGCTTATAGTTACCCTAAAGATGACGCAACCAGTACATTTACATGCCCTACTGGAACTAACTACAAGGTTGTCTTCTGCCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

208

Amino Acids

22.17

Weight (kDa)

4.41

Isoelectric Point (pI)

25.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	31 - 207	8.1e-48	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	134
AciI	CCGC	1 cut(s)	132
AcoI	YGGCCR	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	333, 574
AfiI	CCNNNNNNNGG	4 cut(s)	134, 163, 356, 421
AgsI	TTSAA	1 cut(s)	460
AjiI	CACGTC	2 cut(s)	188, 354
AjnI	CCWGG	3 cut(s)	127, 161, 427
AluBI	AGCT	3 cut(s)	74, 119, 263
AluI	AGCT	3 cut(s)	74, 119, 263
Alw21I	GWGCWC	2 cut(s)	368, 386
Alw44I	GTGCAC	2 cut(s)	364, 382
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	3 cut(s)	154, 165, 190
ApaLI	GTGCAC	2 cut(s)	364, 382
ApeKI	GCWGC	3 cut(s)	71, 116, 119
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	536
AsuHPI	GGTGA	1 cut(s)	218
BaeGI	GKGCMC	4 cut(s)	368, 386, 410, 536
BalI	TGGCCA	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	604
Bbv12I	GWGCWC	2 cut(s)	368, 386
BbvI	GCAGC	3 cut(s)	83, 106, 128
BccI	CCATC	2 cut(s)	41, 314
BceAI	ACGGC	1 cut(s)	402
BciT130I	CCWGG	3 cut(s)	129, 163, 429
BclI	TGATCA	1 cut(s)	466
BcnI	CCSGG	1 cut(s)	536
BfaI	CTAG	2 cut(s)	260, 513
BfmI	CTRYAG	1 cut(s)	501
BisI	GCNGC	3 cut(s)	72, 117, 120
BlsI	GCNGC	3 cut(s)	73, 118, 121
Bme1390I	CCNGG	4 cut(s)	129, 163, 429, 536
BmgBI	CACGTC	2 cut(s)	188, 354
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	4 cut(s)	129, 163, 429, 536
BmsI	GCATC	2 cut(s)	68, 529
BoxI	GACNNNNGTC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	162, 232
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 163, 356, 421
Bse1I	ACTGG	2 cut(s)	570, 595
BseBI	CCWGG	3 cut(s)	129, 163, 429
BseDI	CCNNGG	2 cut(s)	162, 232
BseGI	GGATG	3 cut(s)	33, 84, 544
BseLI	CCNNNNNNNGG	4 cut(s)	134, 163, 356, 421
BseNI	ACTGG	2 cut(s)	570, 595
BseSI	GKGCMC	4 cut(s)	368, 386, 410, 536
BseXI	GCAGC	3 cut(s)	83, 106, 128
BshFI	GGCC	3 cut(s)	156, 167, 192
BsiHKAI	GWGCWC	2 cut(s)	368, 386
BsiSI	CCGG	2 cut(s)	183, 536
BslFI	GGGAC	1 cut(s)	333
BslI	CCNNNNNNNGG	4 cut(s)	134, 163, 356, 421
BsmFI	GGGAC	1 cut(s)	333
BsmI	GAATGC	1 cut(s)	233
BsnI	GGCC	3 cut(s)	156, 167, 192
Bsp1286I	GDGCHC	4 cut(s)	368, 386, 410, 536
Bsp143I	GATC	1 cut(s)	466
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	3 cut(s)	156, 167, 192
BspLI	GGNNCC	1 cut(s)	426
BsrI	ACTGG	2 cut(s)	570, 595
BssECI	CCNNGG	2 cut(s)	162, 232
BssMI	GATC	1 cut(s)	466
BssT1I	CCWWGG	1 cut(s)	232
Bst2UI	CCWGG	3 cut(s)	129, 163, 429
Bst4CI	ACNGT	4 cut(s)	98, 109, 212, 454
Bst6I	CTCTTC	1 cut(s)	56
BstDEI	CTNAG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	33, 84, 544
BstKTI	GATC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	466
BstMWI	GCNNNNNNNGC	2 cut(s)	138, 269
BstNI	CCWGG	3 cut(s)	129, 163, 429
BstNSI	RCATGY	1 cut(s)	585
BstPAI	GACNNNNGTC	1 cut(s)	345
BstSCI	CCNGG	4 cut(s)	127, 161, 427, 534
BstSFI	CTRYAG	1 cut(s)	501
BstSLI	GKGCMC	4 cut(s)	368, 386, 410, 536
BstV1I	GCAGC	3 cut(s)	83, 106, 128
BstV2I	GAAGAC	1 cut(s)	604
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuRI	GGCC	3 cut(s)	156, 167, 192
BtrI	CACGTC	2 cut(s)	188, 354
BtsCI	GGATG	3 cut(s)	33, 84, 544
BtsI	GCAGTG	1 cut(s)	410
BtsIMutI	CAGTG	2 cut(s)	105, 410
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	165
CseI	GACGC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	332, 573
CviAII	CATG	1 cut(s)	582
CviQI	GTAC	2 cut(s)	332, 573
DdeI	CTNAG	1 cut(s)	369
DpnI	GATC	1 cut(s)	468
DpnII	GATC	1 cut(s)	466
EaeI	YGGCCR	1 cut(s)	190
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	440
EcoRII	CCWGG	3 cut(s)	127, 161, 427
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
FaeI	CATG	1 cut(s)	585
FaiI	YATR	9 cut(s)	40, 112, 170, 240, 270, 285, 338, 546, 583
FalI	AAGNNNNNCTT	1 cut(s)	596
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	1 cut(s)	581
FbaI	TGATCA	1 cut(s)	466
Fnu4HI	GCNGC	3 cut(s)	72, 117, 120
FokI	GGATG	3 cut(s)	20, 71, 551
Fsp4HI	GCNGC	3 cut(s)	72, 117, 120
FspBI	CTAG	2 cut(s)	260, 513
GluI	GCNGC	3 cut(s)	72, 117, 120
GsuI	CTGGAG	1 cut(s)	411
HaeIII	GGCC	3 cut(s)	156, 167, 192
HapII	CCGG	2 cut(s)	183, 536
HgaI	GACGC	1 cut(s)	572
Hin1II	CATG	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	78, 526
HpaII	CCGG	2 cut(s)	183, 536
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	3 cut(s)	245, 366, 384
Hpy188III	TCNNGA	2 cut(s)	460, 486
Hpy8I	GTNNAC	3 cut(s)	245, 366, 384
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	415
HpyCH4III	ACNGT	4 cut(s)	98, 109, 212, 454
HpyCH4IV	ACGT	2 cut(s)	187, 353
HpyCH4V	TGCA	6 cut(s)	59, 71, 366, 384, 438, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	138, 269
HpyF3I	CTNAG	1 cut(s)	369
HpySE526I	ACGT	2 cut(s)	187, 353
Hsp92II	CATG	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	466
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	3 cut(s)	83, 106, 128
LweI	GCATC	2 cut(s)	68, 529
MaeI	CTAG	2 cut(s)	260, 513
MaeII	ACGT	2 cut(s)	187, 353
MaeIII	GTNAC	3 cut(s)	206, 494, 548
MalI	GATC	1 cut(s)	468
MboI	GATC	1 cut(s)	466
MboII	GAAGA	2 cut(s)	43, 604
MhlI	GDGCHC	4 cut(s)	368, 386, 410, 536
MlsI	TGGCCA	1 cut(s)	192
MluCI	AATT	1 cut(s)	481
MluNI	TGGCCA	1 cut(s)	192
MnlI	CCTC	5 cut(s)	17, 29, 146, 233, 425
Mox20I	TGGCCA	1 cut(s)	192
MscI	TGGCCA	1 cut(s)	192
MseI	TTAA	5 cut(s)	12, 276, 327, 396, 522
MslI	CAYNNNNRTG	1 cut(s)	580
Msp20I	TGGCCA	1 cut(s)	192
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	2 cut(s)	183, 536
MspR9I	CCNGG	4 cut(s)	129, 163, 429, 536
Mva1269I	GAATGC	1 cut(s)	233
MvaI	CCWGG	3 cut(s)	129, 163, 429
MwoI	GCNNNNNNNGC	2 cut(s)	138, 269
NciI	CCSGG	1 cut(s)	536
NdeII	GATC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	585
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	2 cut(s)	206, 494
NspI	RCATGY	1 cut(s)	585
PctI	GAATGC	1 cut(s)	233
PfeI	GAWTC	2 cut(s)	78, 526
PflMI	CCANNNNNTGG	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	3 cut(s)	73, 118, 121
PshAI	GACNNNNGTC	1 cut(s)	345
Psp6I	CCWGG	3 cut(s)	127, 161, 427
PspGI	CCWGG	3 cut(s)	127, 161, 427
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	165
PstNI	CAGNNNCTG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	2 cut(s)	333, 574
RsaNI	GTAC	2 cut(s)	332, 573
RseI	CAYNNNNRTG	1 cut(s)	580
SaqAI	TTAA	5 cut(s)	12, 276, 327, 396, 522
SatI	GCNGC	3 cut(s)	72, 117, 120
Sau3AI	GATC	1 cut(s)	466
Sau96I	GGNCC	1 cut(s)	165
ScrFI	CCNGG	4 cut(s)	129, 163, 429, 536
SduI	GDGCHC	4 cut(s)	368, 386, 410, 536
SfaNI	GCATC	2 cut(s)	68, 529
SfcI	CTRYAG	1 cut(s)	501
SmiMI	CAYNNNNRTG	1 cut(s)	580
Sse9I	AATT	1 cut(s)	481
SsiI	CCGC	1 cut(s)	132
SspI	AATATT	1 cut(s)	473
SspMI	CTAG	2 cut(s)	260, 513
StyD4I	CCNGG	4 cut(s)	127, 161, 427, 534
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	4 cut(s)	98, 109, 212, 454
TaiI	ACGT	2 cut(s)	190, 356
TaqI	TCGA	4 cut(s)	76, 81, 147, 225
TasI	AATT	1 cut(s)	481
TatI	WGTACW	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	78, 526
Tru1I	TTAA	5 cut(s)	12, 276, 327, 396, 522
Tru9I	TTAA	5 cut(s)	12, 276, 327, 396, 522
TscAI	CASTG	2 cut(s)	112, 410
TseFI	GTSAC	2 cut(s)	206, 494
TseI	GCWGC	3 cut(s)	71, 116, 119
Tsp45I	GTSAC	2 cut(s)	206, 494
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	112, 410
Van91I	CCANNNNNTGG	1 cut(s)	134
VneI	GTGCAC	2 cut(s)	364, 382
XceI	RCATGY	1 cut(s)	585
XspI	CTAG	2 cut(s)	260, 513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.