Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

53451175 .. 53451864

Gene Structure 690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003842

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGCCTTCTCAAAAACCTCCCTCATGTTCTGTACATCCTGTGGATGAGTTCCCTCTACTTTGCTGCATCAACCGTTAATGCAGCTACATTCAATATCCGAAACAACTGTCGCTTCACTGTTTGGGCTGCCGCTGTGCCGGGCGGCGGCAGACAGCTTGACAGACGTGGAAGATGCCAGACTGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCTCAAACACCCTCGCCGAATATGCACTGAACCAATTCAACAACTTGGATTTCTTTGATATCTCTTTGGTTGATGGGTTCAATGTCCCAATGGACTTTAGTCCCACCTCTAACGGTTGCACTAGGGGTATCAAATGCACGGCGGATATAAACGGACAGTGCCCCGCTCAGTTGAGGGCTCCCGGAGGGTGTAACAACCCATGCACTGTGTTCAAAACTAATCAGTATTGTTGTAATTCTGGAAGCTGTGGTCCTACAGACTACTCTAGGTTTTTTAAAAGTCGTTGCTCGGATGCTTATAGTTACCCTAAGGATGATGCAACCAGTACATTTACTTGCCCTGGTGGCACAAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

201

Amino Acids

21.81

Weight (kDa)

8.35

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	31 - 200	3.6e-47	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	392
AciI	CCGC	6 cut(s)	132, 144, 147, 195, 368, 390
AfaI	GTAC	2 cut(s)	35, 553
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	94, 265, 307, 439
AjiI	CACGTC	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	565
AluBI	AGCT	3 cut(s)	86, 157, 471
AluI	AGCT	3 cut(s)	86, 157, 471
Alw26I	GTCTC	1 cut(s)	203
ApeKI	GCWGC	3 cut(s)	65, 83, 128
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
Asp700I	GAANNNNTTC	1 cut(s)	260
AspS9I	GGNCC	1 cut(s)	476
AsuC2I	CCSGG	2 cut(s)	141, 408
AsuHPI	GGTGA	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	476
AxyI	CCTNAGG	1 cut(s)	534
BaeGI	GKGCMC	1 cut(s)	389
BanII	GRGCYC	1 cut(s)	406
BbvI	GCAGC	3 cut(s)	52, 95, 115
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	567
BcnI	CCSGG	2 cut(s)	141, 408
BcoDI	GTCTC	1 cut(s)	203
BfaI	CTAG	2 cut(s)	348, 492
BfmI	CTRYAG	2 cut(s)	480, 580
BglI	GCCNNNNNGGC	1 cut(s)	570
BisI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
BlsI	GCNGC	6 cut(s)	67, 85, 130, 133, 146, 149
Bme1390I	CCNGG	3 cut(s)	141, 408, 567
Bme18I	GGWCC	1 cut(s)	476
BmgBI	CACGTC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	3 cut(s)	141, 408, 567
BmsI	GCATC	4 cut(s)	77, 164, 508, 532
BoxI	GACNNNNGTC	1 cut(s)	324
BpuMI	CCSGG	2 cut(s)	141, 408
BsaI	GGTCTC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	565
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	187, 549
Bse21I	CCTNAGG	1 cut(s)	534
BseBI	CCWGG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	4 cut(s)	36, 51, 523, 544
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMII	CTCAG	1 cut(s)	407
BseNI	ACTGG	2 cut(s)	187, 549
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	52, 95, 115
BsiSI	CCGG	2 cut(s)	140, 408
BslFI	GGGAC	2 cut(s)	296, 312
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	2 cut(s)	296, 312
Bso31I	GGTCTC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	389, 406
Bsp1407I	TGTACA	1 cut(s)	33
BspACI	CCGC	6 cut(s)	132, 144, 147, 195, 368, 390
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	203
BsrBI	CCGCTC	1 cut(s)	392
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	2 cut(s)	187, 549
BssECI	CCNNGG	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	567
Bst4CI	ACNGT	7 cut(s)	76, 110, 121, 191, 341, 384, 433
BstAUI	TGTACA	1 cut(s)	33
BstDEI	CTNAG	2 cut(s)	393, 534
BstF5I	GGATG	4 cut(s)	36, 51, 523, 544
BstMAI	GTCTC	1 cut(s)	203
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 570
BstNI	CCWGG	1 cut(s)	567
BstPAI	GACNNNNGTC	1 cut(s)	324
BstSCI	CCNGG	3 cut(s)	139, 406, 565
BstSFI	CTRYAG	2 cut(s)	480, 580
BstSLI	GKGCMC	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	52, 95, 115
Bsu36I	CCTNAGG	1 cut(s)	534
BtrI	CACGTC	1 cut(s)	167
BtsCI	GGATG	4 cut(s)	36, 51, 523, 544
BtsIMutI	CAGTG	4 cut(s)	117, 251, 389, 429
Cfr13I	GGNCC	1 cut(s)	476
Csp6I	GTAC	2 cut(s)	34, 552
CviAII	CATG	3 cut(s)	26, 426, 600
CviJI	RGCY	7 cut(s)	6, 86, 128, 157, 216, 404, 471
CviKI_1	RGCY	7 cut(s)	6, 86, 128, 157, 216, 404, 471
CviQI	GTAC	2 cut(s)	34, 552
DdeI	CTNAG	2 cut(s)	393, 534
DraI	TTTAAA	1 cut(s)	502
EciI	GGCGGA	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	476
Eco81I	CCTNAGG	1 cut(s)	534
EcoRII	CCWGG	1 cut(s)	565
EcoRV	GATATC	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	406
FaeI	CATG	3 cut(s)	29, 429, 603
FaiI	YATR	8 cut(s)	27, 219, 249, 374, 427, 525, 582, 601
FaqI	GGGAC	2 cut(s)	296, 312
FatI	CATG	3 cut(s)	25, 425, 599
FauI	CCCGC	1 cut(s)	397
Fnu4HI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
FokI	GGATG	4 cut(s)	23, 58, 530, 551
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
FspBI	CTAG	2 cut(s)	348, 492
GluI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
HapII	CCGG	2 cut(s)	140, 408
Hin1II	CATG	3 cut(s)	29, 429, 603
HincII	GTYRAC	1 cut(s)	224
HindII	GTYRAC	1 cut(s)	224
HpaII	CCGG	2 cut(s)	140, 408
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188I	TCNGA	2 cut(s)	101, 517
Hpy188III	TCNNGA	1 cut(s)	465
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	17
HpyCH4III	ACNGT	7 cut(s)	76, 110, 121, 191, 341, 384, 433
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	7 cut(s)	68, 83, 251, 345, 363, 429, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 570
HpyF3I	CTNAG	2 cut(s)	393, 534
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	3 cut(s)	29, 429, 603
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	9 cut(s)	53, 153, 168, 191, 421, 450, 552, 562, 579
Lsp1109I	GCAGC	3 cut(s)	52, 95, 115
LweI	GCATC	4 cut(s)	77, 164, 508, 532
MaeI	CTAG	2 cut(s)	348, 492
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	3 cut(s)	185, 416, 527
MbiI	CCGCTC	1 cut(s)	392
MboII	GAAGA	1 cut(s)	183
MhlI	GDGCHC	2 cut(s)	389, 406
MluCI	AATT	2 cut(s)	260, 460
MnlI	CCTC	9 cut(s)	29, 33, 65, 212, 238, 248, 343, 393, 404
MroXI	GAANNNNTTC	1 cut(s)	260
MseI	TTAA	2 cut(s)	78, 501
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	2 cut(s)	140, 408
MspR9I	CCNGG	3 cut(s)	141, 408, 567
MvaI	CCWGG	1 cut(s)	567
MwoI	GCNNNNNNNGC	2 cut(s)	248, 570
NciI	CCSGG	2 cut(s)	141, 408
NlaIII	CATG	3 cut(s)	29, 429, 603
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	406
PkrI	GCNGC	6 cut(s)	67, 85, 130, 133, 146, 149
PshAI	GACNNNNGTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	476
RsaI	GTAC	2 cut(s)	35, 553
RsaNI	GTAC	2 cut(s)	34, 552
SaqAI	TTAA	2 cut(s)	78, 501
SatI	GCNGC	6 cut(s)	66, 84, 129, 132, 145, 148
Sau96I	GGNCC	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	141, 408, 567
SduI	GDGCHC	2 cut(s)	389, 406
SetI	ASST	7 cut(s)	21, 88, 159, 169, 335, 473, 497
SfaNI	GCATC	4 cut(s)	77, 164, 508, 532
SfcI	CTRYAG	2 cut(s)	480, 580
SinI	GGWCC	1 cut(s)	476
Sse9I	AATT	2 cut(s)	260, 460
SsiI	CCGC	6 cut(s)	132, 144, 147, 195, 368, 390
SspMI	CTAG	2 cut(s)	348, 492
StyD4I	CCNGG	3 cut(s)	139, 406, 565
TaaI	ACNGT	7 cut(s)	76, 110, 121, 191, 341, 384, 433
TaiI	ACGT	1 cut(s)	169
TasI	AATT	2 cut(s)	260, 460
TatI	WGTACW	2 cut(s)	33, 551
TauI	GCSGC	3 cut(s)	134, 147, 150
Tru1I	TTAA	2 cut(s)	78, 501
Tru9I	TTAA	2 cut(s)	78, 501
TscAI	CASTG	4 cut(s)	124, 258, 389, 436
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	3 cut(s)	65, 83, 128
Tsp45I	GTSAC	1 cut(s)	185
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	4 cut(s)	124, 258, 389, 436
VpaK11BI	GGWCC	1 cut(s)	476
XmnI	GAANNNNTTC	1 cut(s)	260
XspI	CTAG	2 cut(s)	348, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.