Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

42668720 .. 42670569

Gene Structure 1850 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0342600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGCGGCCGAAGAGGGTGGTGAGAGTGCGAGCGACCTCTGGGTTTCAGGGAGGACAGTGGTGAAGAAGGGAGGGATCTCAGGAAGCCGTTCCTGCATACTGGGAGCTGGTACCGGATGGGTTCCAGGCAATCCAGTAGGATGGATTCGTCTCAGTCTGGATATTCTTCTCCGACTCAAGCAGCAATCATCGCTGATCTTGGACTCTCAATGTCAAAAGTTATATATTCACAATGAGCGAGTGGGGCTTATAGAGGAGGCTAAGAGCGGAAAGAAGAATGAGGTGCTTGTGGTTCCTTACGAATTCTTACACATTTCTACTGATGTTGAGAAAATTGAGGAGATGCTGGACAAGCTTGTTCAATGGAGGTCAACAATGGAAATTTTTGATGGGTTGACATCTCTTGACTTAATTGTTAATCAAATGAGTCTCTCAATTCTAAGTGCTACTAATAAGCCTCAGGAACTAGATGACGCGGTTCTTAGGAGATTGGTGAAAAGAGTATACATACCTTTACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

173

Amino Acids

19.19

Weight (kDa)

5.75

Isoelectric Point (pI)

59.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	267
AccI	GTMKAC	1 cut(s)	504
AccII	CGCG	1 cut(s)	476
AciI	CCGC	3 cut(s)	5, 267, 476
AclWI	GGATC	1 cut(s)	83
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	302, 381
AfaI	GTAC	1 cut(s)	112
AgsI	TTSAA	1 cut(s)	362
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	2 cut(s)	107, 355
AluI	AGCT	2 cut(s)	107, 355
Alw26I	GTCTC	2 cut(s)	155, 434
AlwI	GGATC	1 cut(s)	83
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	181
ApoI	RAATTY	2 cut(s)	302, 381
Asp700I	GAANNNNTTC	1 cut(s)	88
Asp718I	GGTACC	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	32, 73, 505
AxyI	CCTNAGG	1 cut(s)	459
BanI	GGYRCC	1 cut(s)	110
BbvI	GCAGC	1 cut(s)	193
BccI	CCATC	3 cut(s)	111, 135, 383
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	155, 434
BfaI	CTAG	1 cut(s)	467
BisI	GCNGC	2 cut(s)	6, 182
BlsI	GCNGC	2 cut(s)	7, 183
Bme1390I	CCNGG	1 cut(s)	126
BmiI	GGNNCC	3 cut(s)	112, 123, 294
BmrFI	CCNGG	1 cut(s)	126
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	110
BpuEI	CTTGAG	1 cut(s)	161
BsaWI	WCCGGW	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	105, 134
Bse21I	CCTNAGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	126
BseGI	GGATG	2 cut(s)	122, 146
BseMII	CTCAG	3 cut(s)	93, 166, 473
BseNI	ACTGG	2 cut(s)	105, 134
BseRI	GAGGAG	2 cut(s)	269, 353
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	1 cut(s)	193
Bsh1236I	CGCG	1 cut(s)	476
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	110
BsiEI	CGRYCG	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	114
BsmAI	GTCTC	2 cut(s)	155, 434
BsmBI	CGTCTC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	8
Bsp143I	GATC	2 cut(s)	75, 195
BspACI	CCGC	3 cut(s)	5, 267, 476
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	3 cut(s)	92, 165, 472
BspFNI	CGCG	1 cut(s)	476
BspLI	GGNNCC	3 cut(s)	112, 123, 294
BspPI	GGATC	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	110
BsrBI	CCGCTC	1 cut(s)	267
BsrI	ACTGG	2 cut(s)	105, 134
BssMI	GATC	2 cut(s)	75, 195
BssNAI	GTATAC	1 cut(s)	505
Bst1107I	GTATAC	1 cut(s)	505
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	31
BstDEI	CTNAG	6 cut(s)	79, 152, 261, 440, 459, 482
BstF5I	GGATG	2 cut(s)	122, 146
BstFNI	CGCG	1 cut(s)	476
BstKTI	GATC	2 cut(s)	78, 198
BstMAI	GTCTC	2 cut(s)	155, 434
BstMBI	GATC	2 cut(s)	75, 195
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 190, 244, 352
BstNI	CCWGG	1 cut(s)	126
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	476
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	75
BstZ17I	GTATAC	1 cut(s)	505
BstZI	CGGCCG	1 cut(s)	6
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	8
BtgZI	GCGATG	1 cut(s)	174
BtsCI	GGATG	2 cut(s)	122, 146
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	1 cut(s)	31
CseI	GACGC	1 cut(s)	482
Csp6I	GTAC	1 cut(s)	111
CviJI	RGCY	7 cut(s)	8, 87, 107, 247, 260, 355, 457
CviKI_1	RGCY	7 cut(s)	8, 87, 107, 247, 260, 355, 457
CviQI	GTAC	1 cut(s)	111
DdeI	CTNAG	6 cut(s)	79, 152, 261, 440, 459, 482
DpnI	GATC	2 cut(s)	77, 197
DpnII	GATC	2 cut(s)	75, 195
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EclXI	CGGCCG	1 cut(s)	6
Eco52I	CGGCCG	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	459
EcoRI	GAATTC	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	155
FaiI	YATR	7 cut(s)	98, 223, 225, 251, 505, 509, 520
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	2 cut(s)	6, 182
FokI	GGATG	2 cut(s)	129, 153
Fsp4HI	GCNGC	2 cut(s)	6, 182
FspBI	CTAG	1 cut(s)	467
GluI	GCNGC	2 cut(s)	6, 182
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	114
HgaI	GACGC	1 cut(s)	482
HincII	GTYRAC	2 cut(s)	372, 396
HindII	GTYRAC	2 cut(s)	372, 396
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	4 cut(s)	145, 174, 203, 427
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	3 cut(s)	32, 73, 505
Hpy166II	GTNNAC	3 cut(s)	372, 396, 505
Hpy188I	TCNGA	1 cut(s)	173
Hpy188III	TCNNGA	4 cut(s)	81, 158, 404, 461
Hpy8I	GTNNAC	3 cut(s)	372, 396, 505
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 190, 244, 352
HpyF3I	CTNAG	6 cut(s)	79, 152, 261, 440, 459, 482
KpnI	GGTACC	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	75, 195
LmnI	GCTCC	1 cut(s)	104
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	1 cut(s)	467
MalI	GATC	2 cut(s)	77, 197
MbiI	CCGCTC	1 cut(s)	267
MboI	GATC	2 cut(s)	75, 195
MboII	GAAGA	4 cut(s)	23, 76, 158, 286
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	5 cut(s)	302, 333, 381, 411, 435
MlyI	GAGTC	3 cut(s)	168, 197, 436
MmeI	TCCRAC	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	88
MseI	TTAA	2 cut(s)	410, 417
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	476
MwoI	GCNNNNNNNGC	4 cut(s)	93, 190, 244, 352
NdeII	GATC	2 cut(s)	75, 195
NlaIV	GGNNCC	3 cut(s)	112, 123, 294
PdmI	GAANNNNTTC	1 cut(s)	88
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	7, 183
PleI	GAGTC	3 cut(s)	168, 197, 435
PpsI	GAGTC	3 cut(s)	168, 197, 435
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspN4I	GGNNCC	3 cut(s)	112, 123, 294
PsuI	RGATCY	1 cut(s)	75
RsaI	GTAC	1 cut(s)	112
RsaNI	GTAC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	410, 417
SatI	GCNGC	2 cut(s)	6, 182
Sau3AI	GATC	2 cut(s)	75, 195
SchI	GAGTC	3 cut(s)	168, 197, 436
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	6 cut(s)	39, 109, 285, 357, 371, 514
SfaNI	GCATC	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	5 cut(s)	302, 333, 381, 411, 435
SsiI	CCGC	3 cut(s)	5, 267, 476
SspMI	CTAG	1 cut(s)	467
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	5 cut(s)	302, 333, 381, 411, 435
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	410, 417
Tru9I	TTAA	2 cut(s)	410, 417
TscAI	CASTG	1 cut(s)	63
TseI	GCWGC	1 cut(s)	181
TspRI	CASTG	1 cut(s)	63
XapI	RAATTY	2 cut(s)	302, 381
XmiI	GTMKAC	1 cut(s)	504
XmnI	GAANNNNTTC	1 cut(s)	88
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.