Rroxscaffold_3G00257410

Thaumatin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001028
Physical Location & Seq
Forward (+)
51791413 .. 51794889
3477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257410.1

Sequence Viewer

Length: 222 bp
ATGGAAGAGCCGGAGAAGAGTTTGATTTCGATTATTCGGGAGTTCGGCGCACCGCGTACCATAGAAACCGGCGTACCGCGTACCCATACCACGTACCCCTACCGTAACGACCCGCGATCCGGCAACACCGGCCAGGATGCTTATAGTTACCCCAAGGACTATCCGACGAGCACTTTCACTTGCCCTGGTGGGACTAATTACAGAGTTGTGTTCTGCCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

73

Amino Acids

8.24

Weight (kDa)

6.54

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 45 - 73 1.7e-06 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 55, 79, 115
AciI CCGC 3 cut(s) 53, 77, 113
AclWI GGATC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 130
AfaI GTAC 4 cut(s) 58, 75, 82, 95
AfiI CCNNNNNNNGG 1 cut(s) 119
AjnI CCWGG 2 cut(s) 132, 184
Alw21I GWGCWC 1 cut(s) 173
AlwI GGATC 1 cut(s) 111
AoxI GGCC 1 cut(s) 130
AspLEI GCGC 1 cut(s) 50
BaeI ACNNNNGTAYC 2 cut(s) 57, 90
Bbv12I GWGCWC 1 cut(s) 173
BciT130I CCWGG 2 cut(s) 134, 186
Bme1390I CCNGG 2 cut(s) 134, 186
BmrFI CCNGG 2 cut(s) 134, 186
BmsI GCATC 1 cut(s) 127
BsaAI YACGTR 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 153, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 2 cut(s) 68, 128
BseBI CCWGG 2 cut(s) 134, 186
BseDI CCNNGG 2 cut(s) 153, 184
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 1 cut(s) 119
Bsh1236I CGCG 3 cut(s) 55, 79, 115
BshFI GGCC 1 cut(s) 132
BsiHKAI GWGCWC 1 cut(s) 173
BsiSI CCGG 4 cut(s) 11, 69, 120, 129
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 1 cut(s) 119
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 116
BspACI CCGC 3 cut(s) 53, 77, 113
BspANI GGCC 1 cut(s) 132
BspFNI CGCG 3 cut(s) 55, 79, 115
BspPI GGATC 1 cut(s) 111
BsrFI RCCGGY 2 cut(s) 68, 128
BssAI RCCGGY 2 cut(s) 68, 128
BssECI CCNNGG 2 cut(s) 153, 184
BssMI GATC 1 cut(s) 116
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 134, 186
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 1 cut(s) 11
BstBAI YACGTR 1 cut(s) 93
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 3 cut(s) 55, 79, 115
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 129
BstNI CCWGG 2 cut(s) 134, 186
BstSCI CCNGG 2 cut(s) 132, 184
BstUI CGCG 3 cut(s) 55, 79, 115
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 142
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 2 cut(s) 68, 128
Csp6I GTAC 4 cut(s) 57, 74, 81, 94
CviJI RGCY 2 cut(s) 10, 132
CviKI_1 RGCY 2 cut(s) 10, 132
CviQI GTAC 4 cut(s) 57, 74, 81, 94
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 130
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
Eco130I CCWWGG 1 cut(s) 153
EcoRII CCWGG 2 cut(s) 132, 184
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaiI YATR 3 cut(s) 62, 87, 144
FaqI GGGAC 1 cut(s) 205
FauI CCCGC 1 cut(s) 120
FokI GGATG 1 cut(s) 149
GlaI GCGC 1 cut(s) 49
HaeIII GGCC 1 cut(s) 132
HapII CCGG 4 cut(s) 11, 69, 120, 129
HhaI GCGC 1 cut(s) 50
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HpaII CCGG 4 cut(s) 11, 69, 120, 129
Hpy188I TCNGA 1 cut(s) 165
Hpy188III TCNNGA 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 129
HpySE526I ACGT 1 cut(s) 92
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 116
LpnPI CCDG 8 cut(s) 24, 82, 119, 133, 142, 146, 171, 198
LweI GCATC 1 cut(s) 127
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 2 cut(s) 104, 146
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 2 cut(s) 17, 28
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 1 cut(s) 196
MmeI TCCRAC 1 cut(s) 188
MspI CCGG 4 cut(s) 11, 69, 120, 129
MspR9I CCNGG 2 cut(s) 134, 186
MvaI CCWGG 2 cut(s) 134, 186
MvnI CGCG 3 cut(s) 55, 79, 115
MwoI GCNNNNNNNGC 1 cut(s) 129
NdeII GATC 1 cut(s) 116
Ppu21I YACGTR 1 cut(s) 93
Psp6I CCWGG 2 cut(s) 132, 184
PspGI CCWGG 2 cut(s) 132, 184
RsaI GTAC 4 cut(s) 58, 75, 82, 95
RsaNI GTAC 4 cut(s) 57, 74, 81, 94
Sau3AI GATC 1 cut(s) 116
ScrFI CCNGG 2 cut(s) 134, 186
SduI GDGCHC 1 cut(s) 173
SetI ASST 1 cut(s) 95
SfaNI GCATC 1 cut(s) 127
Sse9I AATT 1 cut(s) 196
SsiI CCGC 3 cut(s) 53, 77, 113
StyD4I CCNGG 2 cut(s) 132, 184
StyI CCWWGG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 95
TaqI TCGA 1 cut(s) 29
TasI AATT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.