Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

3572032 .. 3572727

Gene Structure 696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCATCCACGGCAGCGAACGATCCACGTCAGCCGGCAGCGGCGAAGCCCTACGTGCCGACGGCTCTAGCCCCGGAAGATCTACCAGTCGACTACTCCGGCTTGATCGCCGTCGTCTTCGGCATCGCCGGCGTCATGTTCCGCTACAAGCTGTGCTCGTGGCTGGCGATCATCTTCTGTGCTCAGTCACTGGTCAACATGAAGAGCATTGAAAACGATCTCAAGCAGATCTCCATGGCCATGATGTTTGCTATTATGGGATTGGTGACCAACTACTTTGGACCGGCTCGACCAGGTGCACCTATGAAGAGCTCGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009817 GO:0042742 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

106

Amino Acids

11.39

Weight (kDa)

8.66

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ASTER	PF03669	6 - 99	3.3e-37	PAT complex subunit Asterix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	41, 142
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	237
AcyI	GRCGYC	1 cut(s)	132
AgsI	TTSAA	1 cut(s)	212
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	292
AluBI	AGCT	2 cut(s)	151, 312
AluI	AGCT	2 cut(s)	151, 312
Alw21I	GWGCWC	4 cut(s)	158, 184, 301, 314
Alw44I	GTGCAC	1 cut(s)	297
AlwI	GGATC	1 cut(s)	17
AlwNI	CAGNNNCTG	1 cut(s)	190
AoxI	GGCC	1 cut(s)	237
ApaLI	GTGCAC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	14, 38
AspS9I	GGNCC	1 cut(s)	281
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	109
Bbv12I	GWGCWC	4 cut(s)	158, 184, 301, 314
BbvI	GCAGC	2 cut(s)	26, 50
BceAI	ACGGC	3 cut(s)	27, 78, 95
BciT130I	CCWGG	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	74
BfaI	CTAG	1 cut(s)	68
BglII	AGATCT	2 cut(s)	79, 228
BisI	GCNGC	3 cut(s)	15, 39, 42
BlsI	GCNGC	3 cut(s)	16, 40, 43
Bme1390I	CCNGG	2 cut(s)	74, 294
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	281
BmrFI	CCNGG	2 cut(s)	74, 294
BmsI	GCATC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	74
BsaAI	YACGTR	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	9, 72, 234
Bse118I	RCCGGY	3 cut(s)	34, 128, 283
Bse1I	ACTGG	2 cut(s)	86, 195
BseBI	CCWGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	9, 72, 234
BseGI	GGATG	1 cut(s)	5
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	86, 195
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	26, 50
BshFI	GGCC	1 cut(s)	239
BsiHKAI	GWGCWC	4 cut(s)	158, 184, 301, 314
BsiSI	CCGG	5 cut(s)	35, 74, 99, 129, 284
BsnI	GGCC	1 cut(s)	239
Bsp1286I	GDGCHC	4 cut(s)	158, 184, 301, 314
Bsp143I	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	2 cut(s)	41, 142
BspANI	GGCC	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	17
BspQI	GCTCTTC	2 cut(s)	197, 302
BsrFI	RCCGGY	3 cut(s)	34, 128, 283
BsrI	ACTGG	2 cut(s)	86, 195
BssAI	RCCGGY	3 cut(s)	34, 128, 283
BssECI	CCNNGG	3 cut(s)	9, 72, 234
BssMI	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
BssNI	GRCGYC	1 cut(s)	132
BssSI	CACGAG	1 cut(s)	157
BssT1I	CCWWGG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	157
Bst2UI	CCWGG	1 cut(s)	294
Bst6I	CTCTTC	2 cut(s)	197, 302
BstACI	GRCGYC	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	3 cut(s)	36, 130, 165
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	2 cut(s)	9, 234
BstEII	GGTNACC	1 cut(s)	265
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	6 cut(s)	25, 82, 108, 171, 220, 231
BstMBI	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 129
BstNI	CCWGG	1 cut(s)	294
BstPI	GGTNACC	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	72, 292
BstSLI	GKGCMC	1 cut(s)	301
BstV1I	GCAGC	2 cut(s)	26, 50
BstV2I	GAAGAC	1 cut(s)	109
BstX2I	RGATCY	2 cut(s)	79, 228
BstYI	RGATCY	2 cut(s)	79, 228
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	2 cut(s)	9, 234
BtgZI	GCGATG	1 cut(s)	109
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	36, 130, 165
CaiI	CAGNNNCTG	1 cut(s)	190
Cfr10I	RCCGGY	3 cut(s)	34, 128, 283
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	1 cut(s)	121
CsiI	ACCWGGT	1 cut(s)	292
CviAII	CATG	4 cut(s)	136, 199, 235, 241
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	6 cut(s)	24, 81, 107, 170, 219, 230
DpnII	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	2 cut(s)	197, 302
EarI	CTCTTC	2 cut(s)	197, 302
Ecl136II	GAGCTC	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	234
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	281
Eco53kI	GAGCTC	1 cut(s)	312
Eco91I	GGTNACC	1 cut(s)	265
EcoICRI	GAGCTC	1 cut(s)	312
EcoO65I	GGTNACC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	292
EcoT14I	CCWWGG	1 cut(s)	234
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	4 cut(s)	139, 202, 238, 244
FaiI	YATR	6 cut(s)	137, 200, 236, 242, 257, 305
FatI	CATG	4 cut(s)	135, 198, 234, 240
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	3 cut(s)	15, 39, 42
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	15, 39, 42
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	3 cut(s)	15, 39, 42
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	5 cut(s)	35, 74, 99, 129, 284
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	4 cut(s)	139, 202, 238, 244
HincII	GTYRAC	2 cut(s)	91, 196
HindII	GTYRAC	2 cut(s)	91, 196
HpaII	CCGG	5 cut(s)	35, 74, 99, 129, 284
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	3 cut(s)	91, 196, 299
Hpy8I	GTNNAC	3 cut(s)	91, 196, 299
Hpy99I	CGWCG	2 cut(s)	64, 116
HpyCH4IV	ACGT	2 cut(s)	28, 54
HpyCH4V	TGCA	1 cut(s)	299
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 129
HpyF3I	CTNAG	1 cut(s)	183
HpySE526I	ACGT	2 cut(s)	28, 54
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	4 cut(s)	139, 202, 238, 244
KroI	GCCGGC	2 cut(s)	34, 128
KroNI	GCCGGC	2 cut(s)	36, 130
Kzo9I	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
LguI	GCTCTTC	2 cut(s)	197, 302
Lsp1109I	GCAGC	2 cut(s)	26, 50
LweI	GCATC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	292
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	2 cut(s)	28, 54
MaeIII	GTNAC	2 cut(s)	186, 265
MalI	GATC	6 cut(s)	24, 81, 107, 170, 219, 230
MboI	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
MboII	GAAGA	5 cut(s)	89, 109, 166, 214, 319
MflI	RGATCY	2 cut(s)	79, 228
MhlI	GDGCHC	4 cut(s)	158, 184, 301, 314
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	1 cut(s)	316
MluNI	TGGCCA	1 cut(s)	239
Mox20I	TGGCCA	1 cut(s)	239
MreI	CGCCGGCG	1 cut(s)	128
MroNI	GCCGGC	2 cut(s)	34, 128
MscI	TGGCCA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	5 cut(s)	35, 74, 99, 129, 284
MspR9I	CCNGG	2 cut(s)	74, 294
MvaI	CCWGG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	55, 129
NaeI	GCCGGC	2 cut(s)	36, 130
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
NgoMIV	GCCGGC	2 cut(s)	34, 128
NlaIII	CATG	4 cut(s)	139, 202, 238, 244
NmuCI	GTSAC	2 cut(s)	186, 265
PciSI	GCTCTTC	2 cut(s)	197, 302
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PdiI	GCCGGC	2 cut(s)	36, 130
PkrI	GCNGC	3 cut(s)	16, 40, 43
Ppu21I	YACGTR	1 cut(s)	55
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	1 cut(s)	292
PspEI	GGTNACC	1 cut(s)	265
PspGI	CCWGG	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	281
PstNI	CAGNNNCTG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	79, 228
RseI	CAYNNNNRTG	1 cut(s)	239
SacI	GAGCTC	1 cut(s)	314
SalI	GTCGAC	1 cut(s)	89
SapI	GCTCTTC	2 cut(s)	197, 302
SatI	GCNGC	3 cut(s)	15, 39, 42
Sau3AI	GATC	6 cut(s)	22, 79, 105, 168, 217, 228
Sau96I	GGNCC	1 cut(s)	281
ScrFI	CCNGG	2 cut(s)	74, 294
SduI	GDGCHC	4 cut(s)	158, 184, 301, 314
SetI	ASST	6 cut(s)	31, 57, 153, 298, 304, 314
SexAI	ACCWGGT	1 cut(s)	292
SfaNI	GCATC	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	239
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	316
SsiI	CCGC	2 cut(s)	41, 142
SspMI	CTAG	1 cut(s)	68
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	2 cut(s)	72, 292
StyI	CCWWGG	1 cut(s)	234
TaiI	ACGT	2 cut(s)	31, 57
TaqI	TCGA	3 cut(s)	90, 289, 314
TasI	AATT	1 cut(s)	316
TauI	GCSGC	1 cut(s)	44
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	2 cut(s)	186, 265
TseI	GCWGC	2 cut(s)	14, 38
Tsp45I	GTSAC	2 cut(s)	186, 265
TspDTI	ATGAA	2 cut(s)	215, 320
TspRI	CASTG	1 cut(s)	195
VneI	GTGCAC	1 cut(s)	297
VpaK11BI	GGWCC	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.