Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

60072725 .. 60073414

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG413200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGCCTTCTCAATCACCTCCCTACTGTTCTGTACATCCTATGGATGAGTACCCTCTACTTTGCTGCATCAACCGTGAATGCAGCAACATTCAATATCCGAAACAACTGTCCCTTCACTGTTTGGGCTGCCGCTGTGCCAGGCGGCGGCACACAGCTTGGCAGAGGCCAAACATGGACTATCAACGTAAATGCCGGAACTACAAGGGCTCGCATTTGGGCCAGAACAAATTGCAACTTTGATGGAGCCGGACGTGGAAGATGTCAGACTGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCCCAAACACCCTCGCTGAATATTCACTAAACCAATACATGAACATGGATTTTATTGATATCTCTCTGGTTGATGGGTTCAATGTCCCAATGGACTTTAGTCCTACCTCCAATGGCTGCACTAGAGATATCAGATGCACAGCGGATATAAACGGACAGTGCCCCGCGCAGTTGAAGGCTCCGGGTGGATGTAACAATCCTTGCACTGTGTTCAAAACTGATATGTATTGTTGTAATTCTGGAAACTGTGGTCCTACCGACTACTCTAGATTTTTTAAAAGTCGCTGCCCGAATGCTTATAGTTACCCTAAGGATGATCCAACCAGCCTTTTTACTTGCCCTGGTGGCACTAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

229

Amino Acids

24.93

Weight (kDa)

8.13

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 229	1.8e-61	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	479
AciI	CCGC	6 cut(s)	132, 144, 147, 282, 455, 477
AclWI	GGATC	1 cut(s)	623
AfaI	GTAC	2 cut(s)	35, 52
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgsI	TTSAA	4 cut(s)	94, 394, 487, 526
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	139, 652
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	290
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	2 cut(s)	166, 219
ApeKI	GCWGC	5 cut(s)	65, 83, 128, 429, 597
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspLEI	GCGC	1 cut(s)	481
AspS9I	GGNCC	2 cut(s)	219, 563
AsuC2I	CCSGG	1 cut(s)	495
AsuHPI	GGTGA	2 cut(s)	8, 284
AvaII	GGWCC	1 cut(s)	563
AxyI	CCTNAGG	1 cut(s)	621
BaeGI	GKGCMC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	5 cut(s)	52, 95, 115, 416, 584
BccI	CCATC	2 cut(s)	236, 380
BciT130I	CCWGG	2 cut(s)	141, 654
BcnI	CCSGG	1 cut(s)	495
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	2 cut(s)	435, 579
BfmI	CTRYAG	1 cut(s)	667
BglI	GCCNNNNNGGC	1 cut(s)	657
BisI	GCNGC	8 cut(s)	66, 84, 129, 132, 145, 148, 430, 598
BlsI	GCNGC	8 cut(s)	67, 85, 130, 133, 146, 149, 431, 599
Bme1390I	CCNGG	3 cut(s)	141, 495, 654
Bme18I	GGWCC	1 cut(s)	563
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	2 cut(s)	219, 563
BmiI	GGNNCC	2 cut(s)	247, 492
BmrFI	CCNGG	3 cut(s)	141, 495, 654
BmsI	GCATC	2 cut(s)	77, 437
BoxI	GACNNNNGTC	1 cut(s)	411
BpuMI	CCSGG	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	652
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse1I	ACTGG	1 cut(s)	274
Bse21I	CCTNAGG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	141, 654
BseDI	CCNNGG	1 cut(s)	652
BseGI	GGATG	4 cut(s)	36, 51, 506, 631
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	5 cut(s)	52, 95, 115, 416, 584
BsgI	GTGCAG	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	479
BshFI	GGCC	2 cut(s)	168, 221
BsiSI	CCGG	3 cut(s)	195, 249, 494
BslFI	GGGAC	2 cut(s)	96, 383
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	96, 383
BsmI	GAATGC	2 cut(s)	85, 610
BsnI	GGCC	2 cut(s)	168, 221
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	211, 476
Bsp1407I	TGTACA	1 cut(s)	33
Bsp143I	GATC	1 cut(s)	628
BspACI	CCGC	6 cut(s)	132, 144, 147, 282, 455, 477
BspANI	GGCC	2 cut(s)	168, 221
BspFNI	CGCG	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	247, 492
BspPI	GGATC	1 cut(s)	623
BspTNI	GGTCTC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	1 cut(s)	652
BssMI	GATC	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	141, 654
Bst4CI	ACNGT	8 cut(s)	28, 76, 110, 121, 278, 471, 520, 560
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	621
BstF5I	GGATG	4 cut(s)	36, 51, 506, 631
BstFNI	CGCG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	1 cut(s)	631
BstMAI	GTCTC	1 cut(s)	290
BstMBI	GATC	1 cut(s)	628
BstMWI	GCNNNNNNNGC	1 cut(s)	657
BstNI	CCWGG	2 cut(s)	141, 654
BstPAI	GACNNNNGTC	1 cut(s)	411
BstSCI	CCNGG	3 cut(s)	139, 493, 652
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	1 cut(s)	479
BstV1I	GCAGC	5 cut(s)	52, 95, 115, 416, 584
Bsu36I	CCTNAGG	1 cut(s)	621
BsuRI	GGCC	2 cut(s)	168, 221
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	36, 51, 506, 631
BtsIMutI	CAGTG	3 cut(s)	117, 476, 516
Cac8I	GCNNGC	1 cut(s)	211
CfoI	GCGC	1 cut(s)	481
Cfr13I	GGNCC	2 cut(s)	219, 563
Csp6I	GTAC	2 cut(s)	34, 51
CviAII	CATG	4 cut(s)	174, 352, 358, 687
CviQI	GTAC	2 cut(s)	34, 51
DdeI	CTNAG	1 cut(s)	621
DpnI	GATC	1 cut(s)	630
DpnII	GATC	1 cut(s)	628
DraI	TTTAAA	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	2 cut(s)	373, 442
Eco47I	GGWCC	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	621
EcoRII	CCWGG	2 cut(s)	139, 652
EcoRV	GATATC	2 cut(s)	373, 442
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	4 cut(s)	177, 355, 361, 690
FaqI	GGGAC	2 cut(s)	96, 383
FatI	CATG	4 cut(s)	173, 351, 357, 686
FauI	CCCGC	1 cut(s)	484
Fnu4HI	GCNGC	8 cut(s)	66, 84, 129, 132, 145, 148, 430, 598
FokI	GGATG	4 cut(s)	23, 58, 513, 638
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	8 cut(s)	66, 84, 129, 132, 145, 148, 430, 598
FspBI	CTAG	2 cut(s)	435, 579
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	8 cut(s)	66, 84, 129, 132, 145, 148, 430, 598
HaeIII	GGCC	2 cut(s)	168, 221
HapII	CCGG	3 cut(s)	195, 249, 494
HhaI	GCGC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	177, 355, 361, 690
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HpaII	CCGG	3 cut(s)	195, 249, 494
HphI	GGTGA	2 cut(s)	8, 284
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	101, 267, 446
Hpy188III	TCNNGA	2 cut(s)	552, 579
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	17, 124, 481
HpyCH4III	ACNGT	8 cut(s)	28, 76, 110, 121, 278, 471, 520, 560
HpyCH4IV	ACGT	2 cut(s)	186, 253
HpyCH4V	TGCA	6 cut(s)	68, 83, 234, 432, 450, 516
HpyF10VI	GCNNNNNNNGC	1 cut(s)	657
HpyF3I	CTNAG	1 cut(s)	621
HpySE526I	ACGT	2 cut(s)	186, 253
Hsp92II	CATG	4 cut(s)	177, 355, 361, 690
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	1 cut(s)	628
LmnI	GCTCC	2 cut(s)	245, 496
Lsp1109I	GCAGC	5 cut(s)	52, 95, 115, 416, 584
LweI	GCATC	2 cut(s)	77, 437
MaeI	CTAG	2 cut(s)	435, 579
MaeII	ACGT	2 cut(s)	186, 253
MaeIII	GTNAC	3 cut(s)	272, 503, 614
MalI	GATC	1 cut(s)	630
MboI	GATC	1 cut(s)	628
MboII	GAAGA	1 cut(s)	270
MhlI	GDGCHC	2 cut(s)	211, 476
MluCI	AATT	2 cut(s)	229, 547
MmeI	TCCRAC	1 cut(s)	656
MnlI	CCTC	6 cut(s)	29, 65, 158, 299, 335, 430
MseI	TTAA	1 cut(s)	588
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	134, 455
MspI	CCGG	3 cut(s)	195, 249, 494
MspR9I	CCNGG	3 cut(s)	141, 495, 654
Mva1269I	GAATGC	2 cut(s)	85, 610
MvaI	CCWGG	2 cut(s)	141, 654
MvnI	CGCG	1 cut(s)	479
MwoI	GCNNNNNNNGC	1 cut(s)	657
NciI	CCSGG	1 cut(s)	495
NdeII	GATC	1 cut(s)	628
NlaIII	CATG	4 cut(s)	177, 355, 361, 690
NlaIV	GGNNCC	2 cut(s)	247, 492
NmuCI	GTSAC	1 cut(s)	272
PctI	GAATGC	2 cut(s)	85, 610
PkrI	GCNGC	8 cut(s)	67, 85, 130, 133, 146, 149, 431, 599
PshAI	GACNNNNGTC	1 cut(s)	411
Psp6I	CCWGG	2 cut(s)	139, 652
PspGI	CCWGG	2 cut(s)	139, 652
PspN4I	GGNNCC	2 cut(s)	247, 492
PspPI	GGNCC	2 cut(s)	219, 563
RsaI	GTAC	2 cut(s)	35, 52
RsaNI	GTAC	2 cut(s)	34, 51
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	8 cut(s)	66, 84, 129, 132, 145, 148, 430, 598
Sau3AI	GATC	1 cut(s)	628
Sau96I	GGNCC	2 cut(s)	219, 563
ScrFI	CCNGG	3 cut(s)	141, 495, 654
SduI	GDGCHC	2 cut(s)	211, 476
SetI	ASST	5 cut(s)	21, 159, 189, 256, 422
SfaNI	GCATC	2 cut(s)	77, 437
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	1 cut(s)	563
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	2 cut(s)	229, 547
SsiI	CCGC	6 cut(s)	132, 144, 147, 282, 455, 477
SspI	AATATT	1 cut(s)	335
SspMI	CTAG	2 cut(s)	435, 579
StyD4I	CCNGG	3 cut(s)	139, 493, 652
TaaI	ACNGT	8 cut(s)	28, 76, 110, 121, 278, 471, 520, 560
TaiI	ACGT	2 cut(s)	189, 256
TasI	AATT	2 cut(s)	229, 547
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	3 cut(s)	134, 147, 150
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TscAI	CASTG	3 cut(s)	124, 476, 523
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	5 cut(s)	65, 83, 128, 429, 597
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	368
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	3 cut(s)	124, 476, 523
VpaK11BI	GGWCC	1 cut(s)	563
XbaI	TCTAGA	1 cut(s)	578
XspI	CTAG	2 cut(s)	435, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.