Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

30770106 .. 30771097

Gene Structure 992 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00107060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGAGCCTTCTCAATCACCTCCCCACTGTTCTGTACATCCTATGGATGAGTACCCTCTACTTTGCTTCATCAACCGTTAATGCAGCTACATTCAATATCCAAAACAACTGTCCCTTCACTGTTTGGGCTGCCGCTGTGCCAGGCGGCGGCACACCGCTTGGTAGAGGCCAAACATGGACTATAAACGTAAATGCCGGAACTACAAGGGCCCGCATTTGGGCCAGAACAAATTGCAACTTTGATGGTGCCGGACGTGGAAGTTGCCAGACTGGTGACTGTGGCGGTCTCCTCCAATGTCAAGGCTATGGTCAACCCCCAAACACCCTCGCCGAATATTCACTAAACCAATACATGAACATGGATTTTATTGATATCTCTCTGGTTGATGGGTTCAATGTCCCAATGGACTTTGGTTCCACCTCCAATGGCTGCACTAGAGATATCAGATGCACAGCGGATATAAACGGACAGTGCCCCCGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

161

Amino Acids

17.37

Weight (kDa)

5.57

Isoelectric Point (pI)

31.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	35 - 160	7.2e-35	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	245
AciI	CCGC	8 cut(s)	132, 144, 147, 155, 211, 282, 455, 478
AfaI	GTAC	2 cut(s)	35, 52
AfiI	CCNNNNNNNGG	3 cut(s)	146, 216, 217
AgsI	TTSAA	2 cut(s)	94, 394
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
Alw26I	GTCTC	1 cut(s)	290
AoxI	GGCC	3 cut(s)	166, 207, 219
ApaI	GGGCCC	1 cut(s)	211
ApeKI	GCWGC	3 cut(s)	83, 128, 429
ArsI	GACNNNNNNTTYG	2 cut(s)	94, 126
AspS9I	GGNCC	3 cut(s)	207, 208, 219
AsuHPI	GGTGA	2 cut(s)	8, 284
BaeGI	GKGCMC	2 cut(s)	211, 476
BanI	GGYRCC	1 cut(s)	245
BanII	GRGCYC	1 cut(s)	211
BbvI	GCAGC	3 cut(s)	95, 115, 416
BccI	CCATC	2 cut(s)	236, 380
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	290
BfaI	CTAG	1 cut(s)	435
BisI	GCNGC	6 cut(s)	84, 129, 132, 145, 148, 430
BlsI	GCNGC	6 cut(s)	85, 130, 133, 146, 149, 431
Bme1390I	CCNGG	1 cut(s)	141
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	207, 208, 219
BmiI	GGNNCC	3 cut(s)	209, 247, 415
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	437
BsaI	GGTCTC	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 216, 217
Bse1I	ACTGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	36, 51
BseLI	CCNNNNNNNGG	3 cut(s)	146, 216, 217
BseNI	ACTGG	1 cut(s)	274
BseRI	GAGGAG	1 cut(s)	278
BseSI	GKGCMC	2 cut(s)	211, 476
BseXI	GCAGC	3 cut(s)	95, 115, 416
BsgI	GTGCAG	1 cut(s)	415
BshFI	GGCC	3 cut(s)	168, 209, 221
BshNI	GGYRCC	1 cut(s)	245
BsiSI	CCGG	2 cut(s)	195, 249
BslFI	GGGAC	2 cut(s)	96, 383
BslI	CCNNNNNNNGG	3 cut(s)	146, 216, 217
BsmAI	GTCTC	1 cut(s)	290
BsmFI	GGGAC	2 cut(s)	96, 383
BsnI	GGCC	3 cut(s)	168, 209, 221
Bso31I	GGTCTC	1 cut(s)	290
Bsp120I	GGGCCC	1 cut(s)	207
Bsp1286I	GDGCHC	2 cut(s)	211, 476
Bsp1407I	TGTACA	1 cut(s)	33
BspACI	CCGC	8 cut(s)	132, 144, 147, 155, 211, 282, 455, 478
BspANI	GGCC	3 cut(s)	168, 209, 221
BspLI	GGNNCC	3 cut(s)	209, 247, 415
BspT107I	GGYRCC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	290
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	6 cut(s)	28, 76, 110, 121, 278, 471
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	211
BstF5I	GGATG	2 cut(s)	36, 51
BstMAI	GTCTC	1 cut(s)	290
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	2 cut(s)	211, 476
BstV1I	GCAGC	3 cut(s)	95, 115, 416
BsuRI	GGCC	3 cut(s)	168, 209, 221
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	36, 51
BtsIMutI	CAGTG	3 cut(s)	24, 117, 476
Cac8I	GCNNGC	1 cut(s)	211
Cfr13I	GGNCC	3 cut(s)	207, 208, 219
Csp6I	GTAC	2 cut(s)	34, 51
CviAII	CATG	3 cut(s)	174, 352, 358
CviJI	RGCY	8 cut(s)	6, 86, 128, 168, 209, 221, 303, 429
CviKI_1	RGCY	8 cut(s)	6, 86, 128, 168, 209, 221, 303, 429
CviQI	GTAC	2 cut(s)	34, 51
Eco24I	GRGCYC	1 cut(s)	211
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	2 cut(s)	373, 442
EcoO109I	RGGNCCY	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	139
EcoRV	GATATC	2 cut(s)	373, 442
EcoT38I	GRGCYC	1 cut(s)	211
FaeI	CATG	3 cut(s)	177, 355, 361
FaiI	YATR	7 cut(s)	43, 175, 182, 306, 353, 359, 461
FaqI	GGGAC	2 cut(s)	96, 383
FatI	CATG	3 cut(s)	173, 351, 357
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	6 cut(s)	84, 129, 132, 145, 148, 430
FokI	GGATG	2 cut(s)	23, 58
FriOI	GRGCYC	1 cut(s)	211
Fsp4HI	GCNGC	6 cut(s)	84, 129, 132, 145, 148, 430
FspBI	CTAG	1 cut(s)	435
GluI	GCNGC	6 cut(s)	84, 129, 132, 145, 148, 430
HaeIII	GGCC	3 cut(s)	168, 209, 221
HapII	CCGG	2 cut(s)	195, 249
Hin1II	CATG	3 cut(s)	177, 355, 361
HincII	GTYRAC	1 cut(s)	311
HindII	GTYRAC	1 cut(s)	311
HpaII	CCGG	2 cut(s)	195, 249
HphI	GGTGA	2 cut(s)	8, 284
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	1 cut(s)	446
Hpy8I	GTNNAC	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	17, 124
HpyCH4III	ACNGT	6 cut(s)	28, 76, 110, 121, 278, 471
HpyCH4IV	ACGT	2 cut(s)	186, 253
HpyCH4V	TGCA	4 cut(s)	83, 234, 432, 450
HpySE526I	ACGT	2 cut(s)	186, 253
Hsp92II	CATG	3 cut(s)	177, 355, 361
LpnPI	CCDG	8 cut(s)	126, 153, 208, 235, 255, 262, 278, 365
Lsp1109I	GCAGC	3 cut(s)	95, 115, 416
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	1 cut(s)	435
MaeII	ACGT	2 cut(s)	186, 253
MaeIII	GTNAC	1 cut(s)	272
MhlI	GDGCHC	2 cut(s)	211, 476
MluCI	AATT	1 cut(s)	229
MnlI	CCTC	6 cut(s)	29, 65, 158, 299, 335, 430
MseI	TTAA	1 cut(s)	78
MslI	CAYNNNNRTG	1 cut(s)	356
MspA1I	CMGCKG	2 cut(s)	134, 455
MspI	CCGG	2 cut(s)	195, 249
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
NlaIII	CATG	3 cut(s)	177, 355, 361
NlaIV	GGNNCC	3 cut(s)	209, 247, 415
NmuCI	GTSAC	1 cut(s)	272
PkrI	GCNGC	6 cut(s)	85, 130, 133, 146, 149, 431
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	3 cut(s)	209, 247, 415
PspOMI	GGGCCC	1 cut(s)	207
PspPI	GGNCC	3 cut(s)	207, 208, 219
RsaI	GTAC	2 cut(s)	35, 52
RsaNI	GTAC	2 cut(s)	34, 51
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	6 cut(s)	84, 129, 132, 145, 148, 430
Sau96I	GGNCC	3 cut(s)	207, 208, 219
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	211, 476
SetI	ASST	5 cut(s)	21, 88, 189, 256, 422
SfaNI	GCATC	1 cut(s)	437
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	8 cut(s)	132, 144, 147, 155, 211, 282, 455, 478
SspI	AATATT	1 cut(s)	335
SspMI	CTAG	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	6 cut(s)	28, 76, 110, 121, 278, 471
TaiI	ACGT	2 cut(s)	189, 256
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	3 cut(s)	134, 147, 150
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TscAI	CASTG	3 cut(s)	31, 124, 476
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	3 cut(s)	83, 128, 429
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	2 cut(s)	57, 368
TspGWI	ACGGA	1 cut(s)	480
TspRI	CASTG	3 cut(s)	31, 124, 476
XspI	CTAG	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.