Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

7024852 .. 7026224

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGCAAACCTCTTGGTCTCTACTTTCATATTTTCCGCACTTTTGCTCATCTCCACCGCAACAGCCGCCACATTCGAAATCCTAAACCAATGTAGTTACACCGTGTGGGCTGCCGCAAGCCCTGGAGGTGGCCGACGTCTAGATGCTGGCCAATCATGGAGGCTAGATGTCGCGGCGGGCACTAAAATGGCACGGATTTGGGGTAGGACCAATTGTAACTTTGACTCCTCAGGTCGTGGCCGATGCCAAACTGGTGACTGCAGTGGTGGACTCCAATGTACTGGCTGGGGACAGCCACCAAACACGTTGGCTGAGTACGCTTTGAACCAATTCAACAACTTAGACTTCTACGATATCTCACTTGTCGATGGATTTAACATACCTATGGAGTTTAGCCCAACTAGTTCGAACTGCCATCGGATACTATGTACCGCAGACATAAACGGACAATGTCCAAACGTGTTGAGAGCCCCAGGTGGATGCAACAACCCGTGTACTGTATTTCAGACGAACCAATACTGTTGTACGAACGGTCAGGGATCATGTAGCGATACTGAGTACTCAAGATTCTTTAAGCAGAGATGCCCTGACGCTTACAGCTATCCACAAGATGACCCGACTAGCACTTTCACTTGCACCAACACTAACTACAGGGTCGTGTTTTGTCCAAGGTCTAGGCTCGGTGCTACTGGATCCCACCAGCTCCCGATCAAGATGGTCACCGAGGAGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009651 GO:0009814 GO:0009816 GO:0009817 GO:0042742 GO:0043207 GO:0044424 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

244

Amino Acids

26.63

Weight (kDa)

6.08

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	29 - 223	2.3e-63	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	139
AccII	CGCG	1 cut(s)	173
AciI	CCGC	7 cut(s)	36, 57, 66, 114, 173, 176, 432
AclWI	GGATC	3 cut(s)	547, 687, 700
AcoI	YGGCCR	3 cut(s)	130, 148, 238
AcyI	GRCGYC	1 cut(s)	136
AdeI	CACNNNGTG	1 cut(s)	105
AfaI	GTAC	6 cut(s)	280, 317, 430, 496, 526, 560
AfiI	CCNNNNNNNGG	1 cut(s)	128
AflIII	ACRYGT	2 cut(s)	303, 459
AgsI	TTSAA	2 cut(s)	325, 334
AhlI	ACTAGT	1 cut(s)	401
AjnI	CCWGG	2 cut(s)	121, 472
AluBI	AGCT	2 cut(s)	600, 703
AluI	AGCT	2 cut(s)	600, 703
Alw26I	GTCTC	1 cut(s)	22
AlwI	GGATC	3 cut(s)	547, 687, 700
AoxI	GGCC	3 cut(s)	130, 148, 238
ApeKI	GCWGC	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	207
AsuHPI	GGTGA	2 cut(s)	266, 712
AsuII	TTCGAA	2 cut(s)	75, 407
AvaII	GGWCC	1 cut(s)	207
AxyI	CCTNAGG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	150
BamHI	GGATCC	1 cut(s)	692
BanII	GRGCYC	1 cut(s)	472
BbvI	GCAGC	1 cut(s)	97
BccI	CCATC	3 cut(s)	362, 423, 709
BciT130I	CCWGG	2 cut(s)	123, 474
BciVI	GTATCC	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	22
BcuI	ACTAGT	1 cut(s)	401
BfaI	CTAG	5 cut(s)	140, 164, 402, 621, 675
BfmI	CTRYAG	2 cut(s)	259, 649
BfuI	GTATCC	1 cut(s)	414
BisI	GCNGC	4 cut(s)	66, 111, 114, 174
BlsI	GCNGC	4 cut(s)	67, 112, 115, 175
BmcAI	AGTACT	1 cut(s)	560
Bme1390I	CCNGG	2 cut(s)	123, 474
Bme18I	GGWCC	1 cut(s)	207
BmgT120I	GGNCC	1 cut(s)	207
BmiI	GGNNCC	1 cut(s)	694
BmrFI	CCNGG	2 cut(s)	123, 474
BmsI	GCATC	4 cut(s)	133, 233, 470, 572
BpmI	CTGGAG	1 cut(s)	144
Bpu14I	TTCGAA	2 cut(s)	75, 407
BpuEI	CTTGAG	1 cut(s)	547
BsaHI	GRCGYC	1 cut(s)	136
BsaI	GGTCTC	1 cut(s)	22
BsaJI	CCNNGG	4 cut(s)	121, 472, 668, 723
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	1 cut(s)	128
Bse1I	ACTGG	3 cut(s)	256, 286, 694
Bse21I	CCTNAGG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	123, 474
BseDI	CCNNGG	4 cut(s)	121, 472, 668, 723
BseGI	GGATG	1 cut(s)	485
BseLI	CCNNNNNNNGG	1 cut(s)	128
BseMII	CTCAG	3 cut(s)	243, 303, 546
BseNI	ACTGG	3 cut(s)	256, 286, 694
BseRI	GAGGAG	1 cut(s)	217
BseSI	GKGCMC	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	97
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	132, 150, 240
BslFI	GGGAC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	303
BsnI	GGCC	3 cut(s)	132, 150, 240
Bso31I	GGTCTC	1 cut(s)	22
Bsp119I	TTCGAA	2 cut(s)	75, 407
Bsp1286I	GDGCHC	2 cut(s)	182, 472
Bsp143I	GATC	3 cut(s)	539, 692, 708
BspACI	CCGC	7 cut(s)	36, 57, 66, 114, 173, 176, 432
BspANI	GGCC	3 cut(s)	132, 150, 240
BspCNI	CTCAG	3 cut(s)	242, 304, 547
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	1 cut(s)	694
BspMAI	CTGCAG	1 cut(s)	263
BspPI	GGATC	3 cut(s)	547, 687, 700
BspT104I	TTCGAA	2 cut(s)	75, 407
BspTNI	GGTCTC	1 cut(s)	22
BsrI	ACTGG	3 cut(s)	256, 286, 694
BssECI	CCNNGG	4 cut(s)	121, 472, 668, 723
BssMI	GATC	3 cut(s)	539, 692, 708
BssNI	GRCGYC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	668
Bst2UI	CCWGG	2 cut(s)	123, 474
Bst4CI	ACNGT	4 cut(s)	103, 499, 521, 533
BstACI	GRCGYC	1 cut(s)	136
BstBI	TTCGAA	2 cut(s)	75, 407
BstC8I	GCNNGC	3 cut(s)	118, 148, 178
BstDEI	CTNAG	4 cut(s)	229, 312, 340, 555
BstEII	GGTNACC	1 cut(s)	718
BstF5I	GGATG	1 cut(s)	485
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	542, 695, 711
BstMAI	GTCTC	1 cut(s)	22
BstMBI	GATC	3 cut(s)	539, 692, 708
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 317
BstNI	CCWGG	2 cut(s)	123, 474
BstPI	GGTNACC	1 cut(s)	718
BstSCI	CCNGG	2 cut(s)	121, 472
BstSFI	CTRYAG	2 cut(s)	259, 649
BstSLI	GKGCMC	1 cut(s)	182
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	692
BstXI	CCANNNNNNTGG	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	692
Bsu36I	CCTNAGG	1 cut(s)	229
BsuI	GTATCC	1 cut(s)	414
BsuRI	GGCC	3 cut(s)	132, 150, 240
BtsCI	GGATG	1 cut(s)	485
BtsI	GCAGTG	1 cut(s)	268
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	118, 148, 178
Cfr13I	GGNCC	1 cut(s)	207
CseI	GACGC	1 cut(s)	599
Csp6I	GTAC	6 cut(s)	279, 316, 429, 495, 525, 559
CviAII	CATG	2 cut(s)	156, 543
CviQI	GTAC	6 cut(s)	279, 316, 429, 495, 525, 559
DdeI	CTNAG	4 cut(s)	229, 312, 340, 555
DpnI	GATC	3 cut(s)	541, 694, 710
DpnII	GATC	3 cut(s)	539, 692, 708
DraIII	CACNNNGTG	1 cut(s)	105
EaeI	YGGCCR	3 cut(s)	130, 148, 238
Eco130I	CCWWGG	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	22
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	229
Eco91I	GGTNACC	1 cut(s)	718
EcoO65I	GGTNACC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	121, 472
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	668
EcoT38I	GRGCYC	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	668
FaeI	CATG	2 cut(s)	159, 546
FaiI	YATR	7 cut(s)	29, 157, 380, 386, 427, 440, 544
FaqI	GGGAC	1 cut(s)	303
FatI	CATG	2 cut(s)	155, 542
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	66, 111, 114, 174
FokI	GGATG	1 cut(s)	492
FriOI	GRGCYC	1 cut(s)	472
Fsp4HI	GCNGC	4 cut(s)	66, 111, 114, 174
FspBI	CTAG	5 cut(s)	140, 164, 402, 621, 675
GluI	GCNGC	4 cut(s)	66, 111, 114, 174
GsaI	CCCAGC	1 cut(s)	289
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	132, 150, 240
HgaI	GACGC	1 cut(s)	599
Hin1I	GRCGYC	1 cut(s)	136
Hin1II	CATG	2 cut(s)	159, 546
HinfI	GANTC	3 cut(s)	224, 270, 567
HphI	GGTGA	2 cut(s)	266, 712
Hpy166II	GTNNAC	2 cut(s)	269, 495
Hpy188I	TCNGA	2 cut(s)	420, 507
Hpy188III	TCNNGA	4 cut(s)	140, 564, 706, 712
Hpy8I	GTNNAC	2 cut(s)	269, 495
Hpy99I	CGWCG	1 cut(s)	138
HpyCH4III	ACNGT	4 cut(s)	103, 499, 521, 533
HpyCH4IV	ACGT	3 cut(s)	136, 305, 459
HpyCH4V	TGCA	3 cut(s)	261, 483, 636
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 317
HpyF3I	CTNAG	4 cut(s)	229, 312, 340, 555
HpySE526I	ACGT	3 cut(s)	136, 305, 459
Hsp92I	GRCGYC	1 cut(s)	136
Hsp92II	CATG	2 cut(s)	159, 546
Kzo9I	GATC	3 cut(s)	539, 692, 708
LmnI	GCTCC	1 cut(s)	708
Lsp1109I	GCAGC	1 cut(s)	97
LweI	GCATC	4 cut(s)	133, 233, 470, 572
MaeI	CTAG	5 cut(s)	140, 164, 402, 621, 675
MaeII	ACGT	3 cut(s)	136, 305, 459
MaeIII	GTNAC	4 cut(s)	95, 215, 254, 718
MalI	GATC	3 cut(s)	541, 694, 710
MboI	GATC	3 cut(s)	539, 692, 708
MfeI	CAATTG	1 cut(s)	211
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	2 cut(s)	182, 472
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	3 cut(s)	211, 329, 730
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	218, 264
MnlI	CCTC	5 cut(s)	20, 119, 153, 238, 718
Mox20I	TGGCCA	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	329
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	3 cut(s)	375, 573, 733
MslI	CAYNNNNRTG	2 cut(s)	185, 383
Msp20I	TGGCCA	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	123, 474
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	2 cut(s)	123, 474
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	2 cut(s)	65, 317
NdeII	GATC	3 cut(s)	539, 692, 708
NlaIII	CATG	2 cut(s)	159, 546
NlaIV	GGNNCC	1 cut(s)	694
NmuCI	GTSAC	2 cut(s)	254, 718
NspV	TTCGAA	2 cut(s)	75, 407
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	567
PflFI	GACNNNGTC	1 cut(s)	450
PkrI	GCNGC	4 cut(s)	67, 112, 115, 175
PleI	GAGTC	2 cut(s)	218, 264
PpsI	GAGTC	2 cut(s)	218, 264
Psp6I	CCWGG	2 cut(s)	121, 472
PspEI	GGTNACC	1 cut(s)	718
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	2 cut(s)	121, 472
PspN4I	GGNNCC	1 cut(s)	694
PspPI	GGNCC	1 cut(s)	207
PstI	CTGCAG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	692
PsyI	GACNNNGTC	1 cut(s)	450
RsaI	GTAC	6 cut(s)	280, 317, 430, 496, 526, 560
RsaNI	GTAC	6 cut(s)	279, 316, 429, 495, 525, 559
RseI	CAYNNNNRTG	2 cut(s)	185, 383
SaqAI	TTAA	3 cut(s)	375, 573, 733
SatI	GCNGC	4 cut(s)	66, 111, 114, 174
Sau3AI	GATC	3 cut(s)	539, 692, 708
Sau96I	GGNCC	1 cut(s)	207
ScaI	AGTACT	1 cut(s)	560
SchI	GAGTC	2 cut(s)	218, 264
ScrFI	CCNGG	2 cut(s)	123, 474
SduI	GDGCHC	2 cut(s)	182, 472
SfaNI	GCATC	4 cut(s)	133, 233, 470, 572
SfcI	CTRYAG	2 cut(s)	259, 649
SfuI	TTCGAA	2 cut(s)	75, 407
SinI	GGWCC	1 cut(s)	207
SmiMI	CAYNNNNRTG	2 cut(s)	185, 383
SmlI	CTYRAG	1 cut(s)	562
SmoI	CTYRAG	1 cut(s)	562
SpeI	ACTAGT	1 cut(s)	401
Sse9I	AATT	3 cut(s)	211, 329, 730
SsiI	CCGC	7 cut(s)	36, 57, 66, 114, 173, 176, 432
SspMI	CTAG	5 cut(s)	140, 164, 402, 621, 675
StyD4I	CCNGG	2 cut(s)	121, 472
StyI	CCWWGG	1 cut(s)	668
TaaI	ACNGT	4 cut(s)	103, 499, 521, 533
TaiI	ACGT	3 cut(s)	139, 308, 462
TaqI	TCGA	3 cut(s)	75, 366, 407
TasI	AATT	3 cut(s)	211, 329, 730
TatI	WGTACW	3 cut(s)	278, 494, 558
TauI	GCSGC	3 cut(s)	68, 116, 176
TfiI	GAWTC	1 cut(s)	567
Tru1I	TTAA	3 cut(s)	375, 573, 733
Tru9I	TTAA	3 cut(s)	375, 573, 733
TscAI	CASTG	1 cut(s)	268
TseFI	GTSAC	2 cut(s)	254, 718
TseI	GCWGC	1 cut(s)	110
Tsp45I	GTSAC	2 cut(s)	254, 718
TspDTI	ATGAA	1 cut(s)	16
TspGWI	ACGGA	2 cut(s)	208, 459
TspRI	CASTG	1 cut(s)	268
Tth111I	GACNNNGTC	1 cut(s)	450
VpaK11BI	GGWCC	1 cut(s)	207
XbaI	TCTAGA	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	5 cut(s)	140, 164, 402, 621, 675
ZraI	GACGTC	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.