RchiOBHm_Chr7g0198711

Thaumatin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
16683839 .. 16688949
5111 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17779

Sequence Viewer

Length: 987 bp
ATGGACTTTATTCTCATCTCTAACGGTTGCACTAGGGGTATGAAATGCACAGCGGATATAAACGGACAGTGCCCCGCTCAGTTGAGGGCTCTTGGAGGGTACTACTCTGGGTTTTTTAAAAGTCACTGCCCAGATGCTTATAGTTACCCTAAGGATGATGCAACCAGCACATTTACTTGTCGTGGTGGGATAAACTATAGGGTTTTCACCAAAACACGAATTAAGCTTGATCTTGTAGCCACTATGAAGTCCTTGGCCAATTTCCAAATGCCCCTCATCTTCTTCTTTTTCGTGAGTTCCCTCTTTTTCATCATCTCCTCCAATGCAGCCACTTTCGTAATCCGTAATGAGTGCCCTTACACCGTCTGGGCAGCCGCCTCTCCTGGTGGAGGCCGTCGCCTGGACCGCGGCCAGAGCTGGACACTGAACGTTGCCCCGGGGACGGCCATGGCTCGCATATGGGGGCGTACCAATTGCAATTTTGATAGTAGTGGCCGCGGCCGTTGTGCCACGGGAGATTGTGGGGCGTTGGAGTGCAAGGGATGGGGAGTCCCTCCCAACACCTTGGCAGAATATGCCCTTAACCAGTTCGGAAACATGGACTTCATTGACATTTCCTTAGTCGATGGCTTCAACATTCCAATGGACTTTAGCCCAACCACCGGCAGGTGTAGGGGAATTCGGTGCACTGCGGACATCAACGGGCAGTGTCCTCGAGAGTTGAGGGTACCTAGTGGGTGCAATAACCCTTGCACTGTTTTTAAGACCAATGAATATTGCTGCACAAATGGGCAGGGGAGCTGTGGACCAACAAATTTCTCAAAATTTTTCAAGACTAGGTGCCCGGATGCTTATAGTTACCCTCAGGATGATCCTACTAGCACATTTACATGCCCTGGTGGGACTAACTATAGGGTTGTGTTTTGCCCCACAGGAAACCCTGGTAATTTCCCTTTGGAGATGATAACTGACAAGAGTGAAGAGTAA

Protein Analysis

328

Amino Acids

35.93

Weight (kDa)

8.32

Isoelectric Point (pI)

28.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 34 - 68 3e-08 Thaumatin family
Thaumatin PF00314 116 - 310 6.8e-62 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 657
Acc36I ACCTGC 1 cut(s) 657
Acc65I GGTACC 1 cut(s) 727
AccB1I GGYRCC 2 cut(s) 727, 840
AccBSI CCGCTC 1 cut(s) 77
AccII CGCG 2 cut(s) 408, 498
AciI CCGC 8 cut(s) 53, 75, 375, 406, 408, 496, 498, 692
AclI AACGTT 1 cut(s) 429
AclWI GGATC 1 cut(s) 866
AcoI YGGCCR 5 cut(s) 255, 409, 444, 493, 499
AcsI RAATTY 3 cut(s) 678, 814, 824
AfaI GTAC 3 cut(s) 101, 469, 729
AfiI CCNNNNNNNGG 5 cut(s) 389, 400, 442, 662, 666
AgsI TTSAA 2 cut(s) 634, 832
AjnI CCWGG 4 cut(s) 382, 399, 895, 940
AluBI AGCT 3 cut(s) 226, 417, 801
AluI AGCT 3 cut(s) 226, 417, 801
Alw21I GWGCWC 1 cut(s) 689
Alw44I GTGCAC 1 cut(s) 685
AlwI GGATC 1 cut(s) 866
Ama87I CYCGRG 2 cut(s) 436, 714
AoxI GGCC 6 cut(s) 255, 391, 409, 444, 493, 499
ApaLI GTGCAC 1 cut(s) 685
ApeKI GCWGC 3 cut(s) 326, 371, 780
ApoI RAATTY 3 cut(s) 678, 814, 824
Asp718I GGTACC 1 cut(s) 727
AspS9I GGNCC 2 cut(s) 403, 806
AsuC2I CCSGG 3 cut(s) 437, 438, 845
AsuHPI GGTGA 1 cut(s) 199
AvaI CYCGRG 2 cut(s) 436, 714
AvaII GGWCC 2 cut(s) 403, 806
AxyI CCTNAGG 2 cut(s) 150, 864
BaeGI GKGCMC 4 cut(s) 74, 356, 689, 845
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 2 cut(s) 727, 840
BanII GRGCYC 1 cut(s) 91
Bbv12I GWGCWC 1 cut(s) 689
BbvI GCAGC 3 cut(s) 338, 383, 767
BccI CCATC 2 cut(s) 537, 620
BceAI ACGGC 3 cut(s) 378, 459, 486
BcgI CGANNNNNNTGC 2 cut(s) 695, 729
BciT130I CCWGG 4 cut(s) 384, 401, 897, 942
BcnI CCSGG 3 cut(s) 437, 438, 845
BfaI CTAG 4 cut(s) 33, 732, 837, 879
BfmI CTRYAG 2 cut(s) 196, 910
BfuAI ACCTGC 1 cut(s) 657
BisI GCNGC 7 cut(s) 327, 372, 375, 409, 496, 499, 781
BlsI GCNGC 7 cut(s) 328, 373, 376, 410, 497, 500, 782
Bme1390I CCNGG 7 cut(s) 384, 401, 437, 438, 845, 897, 942
Bme18I GGWCC 2 cut(s) 403, 806
BmeT110I CYCGRG 2 cut(s) 436, 714
BmgT120I GGNCC 2 cut(s) 403, 806
BmiI GGNNCC 2 cut(s) 729, 842
BmrFI CCNGG 7 cut(s) 384, 401, 437, 438, 845, 897, 942
BmsI GCATC 3 cut(s) 124, 148, 838
BpuMI CCSGG 3 cut(s) 437, 438, 845
Bsc4I CCNNNNNNNGG 5 cut(s) 389, 400, 442, 662, 666
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 586
Bse21I CCTNAGG 2 cut(s) 150, 864
BseBI CCWGG 4 cut(s) 384, 401, 897, 942
BseGI GGATG 4 cut(s) 160, 548, 853, 874
BseLI CCNNNNNNNGG 5 cut(s) 389, 400, 442, 662, 666
BseMII CTCAG 2 cut(s) 92, 878
BseNI ACTGG 1 cut(s) 586
BseRI GAGGAG 1 cut(s) 307
BseSI GKGCMC 4 cut(s) 74, 356, 689, 845
BseX3I CGGCCG 1 cut(s) 499
BseXI GCAGC 3 cut(s) 338, 383, 767
BsgI GTGCAG 1 cut(s) 766
Bsh1236I CGCG 2 cut(s) 408, 498
Bsh1285I CGRYCG 1 cut(s) 502
BshFI GGCC 6 cut(s) 257, 393, 411, 446, 495, 501
BshNI GGYRCC 2 cut(s) 727, 840
BsiEI CGRYCG 1 cut(s) 502
BsiHKAI GWGCWC 1 cut(s) 689
BsiHKCI CYCGRG 2 cut(s) 436, 714
BsiSI CCGG 3 cut(s) 437, 663, 845
BslFI GGGAC 3 cut(s) 454, 536, 916
BslI CCNNNNNNNGG 5 cut(s) 389, 400, 442, 662, 666
BsmFI GGGAC 3 cut(s) 454, 536, 916
BsnI GGCC 6 cut(s) 257, 393, 411, 446, 495, 501
BsoBI CYCGRG 2 cut(s) 436, 714
Bsp1286I GDGCHC 5 cut(s) 74, 91, 356, 689, 845
Bsp143I GATC 2 cut(s) 229, 871
Bsp19I CCATGG 1 cut(s) 447
BspACI CCGC 8 cut(s) 53, 75, 375, 406, 408, 496, 498, 692
BspANI GGCC 6 cut(s) 257, 393, 411, 446, 495, 501
BspCNI CTCAG 2 cut(s) 91, 877
BspFNI CGCG 2 cut(s) 408, 498
BspLI GGNNCC 2 cut(s) 729, 842
BspMI ACCTGC 1 cut(s) 657
BspPI GGATC 1 cut(s) 866
BspT107I GGYRCC 2 cut(s) 727, 840
BsrBI CCGCTC 1 cut(s) 77
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 1 cut(s) 586
BssAI RCCGGY 1 cut(s) 662
BssMI GATC 2 cut(s) 229, 871
BssT1I CCWWGG 3 cut(s) 252, 447, 564
Bst2UI CCWGG 4 cut(s) 384, 401, 897, 942
Bst4CI ACNGT 4 cut(s) 26, 69, 364, 757
Bst6I CTCTTC 1 cut(s) 975
BstAPI GCANNNNNTGC 1 cut(s) 575
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 4 cut(s) 78, 150, 619, 864
BstDSI CCRYGG 4 cut(s) 406, 447, 496, 510
BstENI CCTNNNNNAGG 1 cut(s) 387
BstF5I GGATG 4 cut(s) 160, 548, 853, 874
BstFNI CGCG 2 cut(s) 408, 498
BstKTI GATC 2 cut(s) 232, 874
BstMBI GATC 2 cut(s) 229, 871
BstMCI CGRYCG 1 cut(s) 502
BstMWI GCNNNNNNNGC 3 cut(s) 405, 414, 575
BstNI CCWGG 4 cut(s) 384, 401, 897, 942
BstNSI RCATGY 1 cut(s) 894
BstSCI CCNGG 7 cut(s) 382, 399, 435, 436, 843, 895, 940
BstSFI CTRYAG 2 cut(s) 196, 910
BstSLI GKGCMC 4 cut(s) 74, 356, 689, 845
BstUI CGCG 2 cut(s) 408, 498
BstV1I GCAGC 3 cut(s) 338, 383, 767
BstXI CCANNNNNNTGG 1 cut(s) 565
BstZI CGGCCG 1 cut(s) 499
Bsu36I CCTNAGG 2 cut(s) 150, 864
BsuRI GGCC 6 cut(s) 257, 393, 411, 446, 495, 501
BtgI CCRYGG 4 cut(s) 406, 447, 496, 510
BtsCI GGATG 4 cut(s) 160, 548, 853, 874
BtsI GCAGTG 3 cut(s) 124, 687, 713
BtsIMutI CAGTG 6 cut(s) 74, 124, 422, 687, 713, 753
BveI ACCTGC 1 cut(s) 657
Cac8I GCNNGC 1 cut(s) 454
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 2 cut(s) 403, 806
Cfr42I CCGCGG 2 cut(s) 409, 499
Cfr9I CCCGGG 1 cut(s) 436
Csp6I GTAC 3 cut(s) 100, 468, 728
CviAII CATG 3 cut(s) 448, 598, 891
CviQI GTAC 3 cut(s) 100, 468, 728
DdeI CTNAG 4 cut(s) 78, 150, 619, 864
DpnI GATC 2 cut(s) 231, 873
DpnII GATC 2 cut(s) 229, 871
DraI TTTAAA 1 cut(s) 118
EaeI YGGCCR 5 cut(s) 255, 409, 444, 493, 499
EagI CGGCCG 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 975
EarI CTCTTC 1 cut(s) 975
EclXI CGGCCG 1 cut(s) 499
Eco130I CCWWGG 3 cut(s) 252, 447, 564
Eco24I GRGCYC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 403, 806
Eco52I CGGCCG 1 cut(s) 499
Eco81I CCTNAGG 2 cut(s) 150, 864
Eco88I CYCGRG 2 cut(s) 436, 714
EcoNI CCTNNNNNAGG 1 cut(s) 387
EcoRI GAATTC 1 cut(s) 678
EcoRII CCWGG 4 cut(s) 382, 399, 895, 940
EcoT14I CCWWGG 3 cut(s) 252, 447, 564
EcoT38I GRGCYC 1 cut(s) 91
ErhI CCWWGG 3 cut(s) 252, 447, 564
FaeI CATG 3 cut(s) 451, 601, 894
FaqI GGGAC 3 cut(s) 454, 536, 916
FatI CATG 3 cut(s) 447, 597, 890
FauI CCCGC 1 cut(s) 82
FauNDI CATATG 1 cut(s) 458
Fnu4HI GCNGC 7 cut(s) 327, 372, 375, 409, 496, 499, 781
FokI GGATG 4 cut(s) 167, 555, 860, 881
FriOI GRGCYC 1 cut(s) 91
Fsp4HI GCNGC 7 cut(s) 327, 372, 375, 409, 496, 499, 781
FspBI CTAG 4 cut(s) 33, 732, 837, 879
GluI GCNGC 7 cut(s) 327, 372, 375, 409, 496, 499, 781
HaeIII GGCC 6 cut(s) 257, 393, 411, 446, 495, 501
HapII CCGG 3 cut(s) 437, 663, 845
Hin1II CATG 3 cut(s) 451, 601, 894
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 1 cut(s) 549
HpaII CCGG 3 cut(s) 437, 663, 845
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 687, 806
Hpy188I TCNGA 1 cut(s) 593
Hpy188III TCNNGA 4 cut(s) 292, 716, 832, 866
Hpy8I GTNNAC 2 cut(s) 687, 806
Hpy99I CGWCG 1 cut(s) 399
HpyCH4III ACNGT 4 cut(s) 26, 69, 364, 757
HpyCH4IV ACGT 1 cut(s) 429
HpyF10VI GCNNNNNNNGC 3 cut(s) 405, 414, 575
HpyF3I CTNAG 4 cut(s) 78, 150, 619, 864
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 3 cut(s) 451, 601, 894
KpnI GGTACC 1 cut(s) 731
KspI CCGCGG 2 cut(s) 409, 499
Kzo9I GATC 2 cut(s) 229, 871
LmnI GCTCC 1 cut(s) 798
Lsp1109I GCAGC 3 cut(s) 338, 383, 767
LweI GCATC 3 cut(s) 124, 148, 838
MaeI CTAG 4 cut(s) 33, 732, 837, 879
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 3 cut(s) 122, 143, 857
MalI GATC 2 cut(s) 231, 873
MbiI CCGCTC 1 cut(s) 77
MboI GATC 2 cut(s) 229, 871
MboII GAAGA 2 cut(s) 271, 274
MfeI CAATTG 1 cut(s) 472
MhlI GDGCHC 5 cut(s) 74, 91, 356, 689, 845
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 8 cut(s) 219, 259, 472, 478, 678, 814, 824, 946
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 1 cut(s) 558
MmeI TCCRAC 1 cut(s) 510
Mox20I TGGCCA 1 cut(s) 257
MscI TGGCCA 1 cut(s) 257
MseI TTAA 4 cut(s) 117, 222, 582, 762
MslI CAYNNNNRTG 2 cut(s) 641, 889
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 3 cut(s) 53, 408, 498
MspI CCGG 3 cut(s) 437, 663, 845
MspR9I CCNGG 7 cut(s) 384, 401, 437, 438, 845, 897, 942
MunI CAATTG 1 cut(s) 472
MvaI CCWGG 4 cut(s) 384, 401, 897, 942
MvnI CGCG 2 cut(s) 408, 498
MwoI GCNNNNNNNGC 3 cut(s) 405, 414, 575
NciI CCSGG 3 cut(s) 437, 438, 845
NcoI CCATGG 1 cut(s) 447
NdeI CATATG 1 cut(s) 458
NdeII GATC 2 cut(s) 229, 871
NlaIII CATG 3 cut(s) 451, 601, 894
NlaIV GGNNCC 2 cut(s) 729, 842
NmuCI GTSAC 1 cut(s) 122
NspI RCATGY 1 cut(s) 894
PaeR7I CTCGAG 1 cut(s) 714
PaqCI CACCTGC 1 cut(s) 657
PkrI GCNGC 7 cut(s) 328, 373, 376, 410, 497, 500, 782
PleI GAGTC 1 cut(s) 557
PpsI GAGTC 1 cut(s) 557
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 4 cut(s) 382, 399, 895, 940
PspGI CCWGG 4 cut(s) 382, 399, 895, 940
PspN4I GGNNCC 2 cut(s) 729, 842
PspPI GGNCC 2 cut(s) 403, 806
RsaI GTAC 3 cut(s) 101, 469, 729
RsaNI GTAC 3 cut(s) 100, 468, 728
RseI CAYNNNNRTG 2 cut(s) 641, 889
SacII CCGCGG 2 cut(s) 409, 499
SaqAI TTAA 4 cut(s) 117, 222, 582, 762
SatI GCNGC 7 cut(s) 327, 372, 375, 409, 496, 499, 781
Sau3AI GATC 2 cut(s) 229, 871
Sau96I GGNCC 2 cut(s) 403, 806
SchI GAGTC 1 cut(s) 558
ScrFI CCNGG 7 cut(s) 384, 401, 437, 438, 845, 897, 942
SduI GDGCHC 5 cut(s) 74, 91, 356, 689, 845
SetI ASST 8 cut(s) 228, 419, 432, 566, 671, 733, 803, 842
SfaNI GCATC 3 cut(s) 124, 148, 838
SfcI CTRYAG 2 cut(s) 196, 910
Sfr274I CTCGAG 1 cut(s) 714
Sfr303I CCGCGG 2 cut(s) 409, 499
SgrBI CCGCGG 2 cut(s) 409, 499
SinI GGWCC 2 cut(s) 403, 806
SlaI CTCGAG 1 cut(s) 714
SmaI CCCGGG 1 cut(s) 438
SmiMI CAYNNNNRTG 2 cut(s) 641, 889
SmlI CTYRAG 1 cut(s) 714
SmoI CTYRAG 1 cut(s) 714
Sse9I AATT 8 cut(s) 219, 259, 472, 478, 678, 814, 824, 946
SsiI CCGC 8 cut(s) 53, 75, 375, 406, 408, 496, 498, 692
SspI AATATT 1 cut(s) 776
SspMI CTAG 4 cut(s) 33, 732, 837, 879
StyD4I CCNGG 7 cut(s) 382, 399, 435, 436, 843, 895, 940
StyI CCWWGG 3 cut(s) 252, 447, 564
TaaI ACNGT 4 cut(s) 26, 69, 364, 757
TaiI ACGT 1 cut(s) 432
TaqI TCGA 2 cut(s) 624, 715
TasI AATT 8 cut(s) 219, 259, 472, 478, 678, 814, 824, 946
TauI GCSGC 4 cut(s) 377, 411, 498, 501
Tru1I TTAA 4 cut(s) 117, 222, 582, 762
Tru9I TTAA 4 cut(s) 117, 222, 582, 762
TscAI CASTG 6 cut(s) 74, 131, 429, 694, 713, 760
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 3 cut(s) 326, 371, 780
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 5 cut(s) 56, 260, 298, 595, 786
TspGWI ACGGA 2 cut(s) 78, 332
TspMI CCCGGG 1 cut(s) 436
TspRI CASTG 6 cut(s) 74, 131, 429, 694, 713, 760
VneI GTGCAC 1 cut(s) 685
VpaK11BI GGWCC 2 cut(s) 403, 806
XagI CCTNNNNNAGG 1 cut(s) 387
XapI RAATTY 3 cut(s) 678, 814, 824
XceI RCATGY 1 cut(s) 894
XhoI CTCGAG 1 cut(s) 714
XmaI CCCGGG 1 cut(s) 436
XspI CTAG 4 cut(s) 33, 732, 837, 879
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.