Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Reverse (-)

5672032 .. 5672709

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAGCCCCCTTAAAAGCCTCTTACTTTTCTCCATCCTATGTGCCATTCTTTTCTTTGCATCAGCTAATGCAGCTCGATTTGACATTCAAAACAACTGTCCCTACACTGTATGGGCAGCTGCTGTGCCAGGTGGTGGCCGCCAGCTCGACGGAGGCCAATCCTGGGCCATAGATGTGAGTGCTGGTACCACAGGGGCTCGCATTTGGGCTCGGACGGGATGCAACTTCGATGGAGCAGGACGTGGCCAATGCCAAACAGGTGATTGTGGGGGTGTCCTCGAATGCCAAGGCTATGGTCAACCACCAAACACCCTAGCTGAATATGCCCTTAATCAATATAACAACTTGGATTTCTTTGACATTTCTCTTGTTGATGGGTTTAATGTACCTATGGACTTTAGTCCCACGTCTGGTGGGTGCACTAAGGGGATTAGGTGCACGGCTGATATTAACGGGCAGTGCCCTGACCAACTGAAGGCTCCAGGAGGGTGCAACAATCCTTGCACCGTGTTCAAGACTGATCAATATTGTTGCAATTCTGGAACTTGTGGCCCTACAGACTTCTCTAGGTTTTTTAAGAGTCGGTGCCCGGATGCTTATAGTTACCCTAAGGATGACCCAACCAGTACATTTACATGTCCTACTGGAACTAACTACAAGGTTGTCTTCTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

226

Amino Acids

23.98

Weight (kDa)

4.81

Isoelectric Point (pI)

25.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Thaumatin	PF00314	31 - 225	5e-63	Thaumatin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	185
AccB1I	GGYRCC	2 cut(s)	185, 585
AccB7I	CCANNNNNTGG	1 cut(s)	134
AciI	CCGC	1 cut(s)	139
AcoI	YGGCCR	2 cut(s)	136, 244
AcuI	CTGAAG	1 cut(s)	494
AfaI	GTAC	3 cut(s)	187, 387, 628
AfiI	CCNNNNNNNGG	4 cut(s)	134, 163, 410, 475
AflIII	ACRYGT	1 cut(s)	635
AgsI	TTSAA	2 cut(s)	89, 514
AjiI	CACGTC	2 cut(s)	242, 408
AjnI	CCWGG	3 cut(s)	127, 161, 481
AluBI	AGCT	5 cut(s)	65, 74, 119, 145, 317
AluI	AGCT	5 cut(s)	65, 74, 119, 145, 317
Alw21I	GWGCWC	2 cut(s)	422, 440
Alw44I	GTGCAC	2 cut(s)	418, 436
AlwNI	CAGNNNCTG	1 cut(s)	122
AoxI	GGCC	5 cut(s)	136, 154, 165, 244, 550
ApaLI	GTGCAC	2 cut(s)	418, 436
ApeKI	GCWGC	3 cut(s)	71, 116, 119
ArsI	GACNNNNNNTTYG	2 cut(s)	82, 114
Asp718I	GGTACC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	165, 551
AsuC2I	CCSGG	1 cut(s)	590
AsuHPI	GGTGA	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	609
BaeGI	GKGCMC	4 cut(s)	422, 440, 464, 590
BalI	TGGCCA	1 cut(s)	246
BanI	GGYRCC	2 cut(s)	185, 585
BanII	GRGCYC	3 cut(s)	8, 199, 211
BbsI	GAAGAC	1 cut(s)	658
Bbv12I	GWGCWC	2 cut(s)	422, 440
BbvI	GCAGC	3 cut(s)	83, 106, 128
BccI	CCATC	3 cut(s)	41, 224, 368
BceAI	ACGGC	1 cut(s)	456
BciT130I	CCWGG	3 cut(s)	129, 163, 483
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	590
BfaI	CTAG	2 cut(s)	314, 567
BfmI	CTRYAG	1 cut(s)	555
BisI	GCNGC	4 cut(s)	72, 117, 120, 139
BlsI	GCNGC	4 cut(s)	73, 118, 121, 140
Bme1390I	CCNGG	4 cut(s)	129, 163, 483, 590
BmgBI	CACGTC	2 cut(s)	242, 408
BmgT120I	GGNCC	2 cut(s)	165, 551
BmiI	GGNNCC	3 cut(s)	187, 480, 587
BmrFI	CCNGG	4 cut(s)	129, 163, 483, 590
BmsI	GCATC	3 cut(s)	68, 209, 583
BoxI	GACNNNNGTC	1 cut(s)	399
BpiI	GAAGAC	1 cut(s)	658
BpmI	CTGGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	590
BsaJI	CCNNGG	2 cut(s)	162, 286
Bsc4I	CCNNNNNNNGG	4 cut(s)	134, 163, 410, 475
Bse1I	ACTGG	2 cut(s)	624, 649
Bse21I	CCTNAGG	1 cut(s)	609
BseBI	CCWGG	3 cut(s)	129, 163, 483
BseDI	CCNNGG	2 cut(s)	162, 286
BseGI	GGATG	4 cut(s)	33, 224, 598, 619
BseLI	CCNNNNNNNGG	4 cut(s)	134, 163, 410, 475
BseNI	ACTGG	2 cut(s)	624, 649
BseSI	GKGCMC	4 cut(s)	422, 440, 464, 590
BseXI	GCAGC	3 cut(s)	83, 106, 128
BshFI	GGCC	5 cut(s)	138, 156, 167, 246, 552
BshNI	GGYRCC	2 cut(s)	185, 585
BsiHKAI	GWGCWC	2 cut(s)	422, 440
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	2 cut(s)	84, 387
BslI	CCNNNNNNNGG	4 cut(s)	134, 163, 410, 475
BsmFI	GGGAC	2 cut(s)	84, 387
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	5 cut(s)	138, 156, 167, 246, 552
Bsp1286I	GDGCHC	7 cut(s)	8, 199, 211, 422, 440, 464, 590
Bsp143I	GATC	1 cut(s)	520
BspACI	CCGC	1 cut(s)	139
BspANI	GGCC	5 cut(s)	138, 156, 167, 246, 552
BspLI	GGNNCC	3 cut(s)	187, 480, 587
BspT107I	GGYRCC	2 cut(s)	185, 585
BsrI	ACTGG	2 cut(s)	624, 649
BssECI	CCNNGG	2 cut(s)	162, 286
BssMI	GATC	1 cut(s)	520
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	3 cut(s)	129, 163, 483
Bst4CI	ACNGT	3 cut(s)	98, 109, 508
BstC8I	GCNNGC	2 cut(s)	143, 199
BstDEI	CTNAG	2 cut(s)	423, 609
BstF5I	GGATG	4 cut(s)	33, 224, 598, 619
BstKTI	GATC	1 cut(s)	523
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 323
BstNI	CCWGG	3 cut(s)	129, 163, 483
BstNSI	RCATGY	1 cut(s)	639
BstPAI	GACNNNNGTC	1 cut(s)	399
BstSCI	CCNGG	4 cut(s)	127, 161, 481, 588
BstSFI	CTRYAG	1 cut(s)	555
BstSLI	GKGCMC	4 cut(s)	422, 440, 464, 590
BstV1I	GCAGC	3 cut(s)	83, 106, 128
BstV2I	GAAGAC	1 cut(s)	658
BstXI	CCANNNNNNTGG	1 cut(s)	293
Bsu36I	CCTNAGG	1 cut(s)	609
BsuRI	GGCC	5 cut(s)	138, 156, 167, 246, 552
BtrI	CACGTC	2 cut(s)	242, 408
BtsCI	GGATG	4 cut(s)	33, 224, 598, 619
BtsI	GCAGTG	1 cut(s)	464
BtsIMutI	CAGTG	2 cut(s)	105, 464
Cac8I	GCNNGC	2 cut(s)	143, 199
CaiI	CAGNNNCTG	1 cut(s)	122
Cfr13I	GGNCC	2 cut(s)	165, 551
Csp6I	GTAC	3 cut(s)	186, 386, 627
CviAII	CATG	1 cut(s)	636
CviQI	GTAC	3 cut(s)	186, 386, 627
DdeI	CTNAG	2 cut(s)	423, 609
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
EaeI	YGGCCR	2 cut(s)	136, 244
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	3 cut(s)	8, 199, 211
Eco57I	CTGAAG	1 cut(s)	494
Eco81I	CCTNAGG	1 cut(s)	609
EcoRII	CCWGG	3 cut(s)	127, 161, 481
EcoT14I	CCWWGG	1 cut(s)	286
EcoT38I	GRGCYC	3 cut(s)	8, 199, 211
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	1 cut(s)	639
FaiI	YATR	9 cut(s)	40, 112, 170, 294, 324, 339, 392, 600, 637
FalI	AAGNNNNNCTT	1 cut(s)	650
FaqI	GGGAC	2 cut(s)	84, 387
FatI	CATG	1 cut(s)	635
FbaI	TGATCA	1 cut(s)	520
Fnu4HI	GCNGC	4 cut(s)	72, 117, 120, 139
FokI	GGATG	4 cut(s)	20, 231, 605, 626
FriOI	GRGCYC	3 cut(s)	8, 199, 211
Fsp4HI	GCNGC	4 cut(s)	72, 117, 120, 139
FspBI	CTAG	2 cut(s)	314, 567
GluI	GCNGC	4 cut(s)	72, 117, 120, 139
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	5 cut(s)	138, 156, 167, 246, 552
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	1 cut(s)	639
HincII	GTYRAC	1 cut(s)	299
HindII	GTYRAC	1 cut(s)	299
HinfI	GANTC	1 cut(s)	580
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	299, 420, 438
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	2 cut(s)	514, 540
Hpy8I	GTNNAC	3 cut(s)	299, 420, 438
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	3 cut(s)	98, 109, 508
HpyCH4IV	ACGT	2 cut(s)	241, 407
HpyCH4V	TGCA	8 cut(s)	59, 71, 222, 420, 438, 492, 504, 534
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 323
HpyF3I	CTNAG	2 cut(s)	423, 609
HpySE526I	ACGT	2 cut(s)	241, 407
Hsp92II	CATG	1 cut(s)	639
KpnI	GGTACC	1 cut(s)	189
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	1 cut(s)	520
LmnI	GCTCC	2 cut(s)	233, 484
Lsp1109I	GCAGC	3 cut(s)	83, 106, 128
LweI	GCATC	3 cut(s)	68, 209, 583
MaeI	CTAG	2 cut(s)	314, 567
MaeII	ACGT	2 cut(s)	241, 407
MaeIII	GTNAC	1 cut(s)	602
MalI	GATC	1 cut(s)	522
MboI	GATC	1 cut(s)	520
MboII	GAAGA	1 cut(s)	658
MhlI	GDGCHC	7 cut(s)	8, 199, 211, 422, 440, 464, 590
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	1 cut(s)	535
MluNI	TGGCCA	1 cut(s)	246
MlyI	GAGTC	1 cut(s)	589
MnlI	CCTC	4 cut(s)	29, 146, 287, 479
Mox20I	TGGCCA	1 cut(s)	246
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	5 cut(s)	12, 330, 381, 450, 576
MslI	CAYNNNNRTG	2 cut(s)	173, 634
Msp20I	TGGCCA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	4 cut(s)	129, 163, 483, 590
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	3 cut(s)	129, 163, 483
MwoI	GCNNNNNNNGC	2 cut(s)	71, 323
NciI	CCSGG	1 cut(s)	590
NdeII	GATC	1 cut(s)	520
NlaIII	CATG	1 cut(s)	639
NlaIV	GGNNCC	3 cut(s)	187, 480, 587
NspI	RCATGY	1 cut(s)	639
PciI	ACATGT	1 cut(s)	635
PctI	GAATGC	1 cut(s)	287
PflMI	CCANNNNNTGG	1 cut(s)	134
PfoI	TCCNGGA	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	73, 118, 121, 140
PleI	GAGTC	1 cut(s)	588
PpsI	GAGTC	1 cut(s)	588
PscI	ACATGT	1 cut(s)	635
PshAI	GACNNNNGTC	1 cut(s)	399
Psp6I	CCWGG	3 cut(s)	127, 161, 481
PspGI	CCWGG	3 cut(s)	127, 161, 481
PspN4I	GGNNCC	3 cut(s)	187, 480, 587
PspPI	GGNCC	2 cut(s)	165, 551
PstNI	CAGNNNCTG	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	3 cut(s)	187, 387, 628
RsaNI	GTAC	3 cut(s)	186, 386, 627
RseI	CAYNNNNRTG	2 cut(s)	173, 634
SaqAI	TTAA	5 cut(s)	12, 330, 381, 450, 576
SatI	GCNGC	4 cut(s)	72, 117, 120, 139
Sau3AI	GATC	1 cut(s)	520
Sau96I	GGNCC	2 cut(s)	165, 551
SchI	GAGTC	1 cut(s)	589
ScrFI	CCNGG	4 cut(s)	129, 163, 483, 590
SduI	GDGCHC	7 cut(s)	8, 199, 211, 422, 440, 464, 590
SfaNI	GCATC	3 cut(s)	68, 209, 583
SfcI	CTRYAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	2 cut(s)	173, 634
Sse9I	AATT	1 cut(s)	535
SsiI	CCGC	1 cut(s)	139
SspI	AATATT	1 cut(s)	527
SspMI	CTAG	2 cut(s)	314, 567
StyD4I	CCNGG	4 cut(s)	127, 161, 481, 588
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	3 cut(s)	98, 109, 508
TaiI	ACGT	2 cut(s)	244, 410
TaqI	TCGA	4 cut(s)	76, 147, 228, 279
TasI	AATT	1 cut(s)	535
TatI	WGTACW	1 cut(s)	626
TauI	GCSGC	1 cut(s)	141
Tru1I	TTAA	5 cut(s)	12, 330, 381, 450, 576
Tru9I	TTAA	5 cut(s)	12, 330, 381, 450, 576
TscAI	CASTG	2 cut(s)	112, 464
TseI	GCWGC	3 cut(s)	71, 116, 119
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	2 cut(s)	112, 464
Van91I	CCANNNNNTGG	1 cut(s)	134
VneI	GTGCAC	2 cut(s)	418, 436
XceI	RCATGY	1 cut(s)	639
XspI	CTAG	2 cut(s)	314, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.