Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001028

Physical Location & Seq

Genomic Coordinates Forward (+)

10404526 .. 10405456

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G094200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGCCTACTCAAAAAATTCTCAGTCTTTTCCATCATATGCATCACCCTTTACTTTCCAACTTCAACCAATGCAGCGCGTTTCGATATCCGAAACAACTGTGCCTTCACAGTCTGGGCAGCAGCCTCACCAGGCGGTGGAAGGCCGCTTAACAGTGGCGAATCTTGGCCTTTAGATGTGAACTCCGGCACTGCTGGGGCCCGCATTTGGGCACGAACGGGATGCAGCTTCGATGGAGCTGGACGTGGCAGCTGCCAAACAGGTGATTGTGGAGGTGTCCTCCAATGCCAAGGCTATGGCCAACCCCCAAACACCCTAGCAGAATATGCACTTAACCAATATAACAACTTAGATTTTTTTGATATTTCTCTGGTTGATGGGTTCAATGTCCCAATGGACTTTAGTCCCACGGACAATGGATGCACTAGGGGGATACAATGCACGGCTGATATTAATGGGCAGTGTCCTAACGAATTGAAGGCTCAAGGAGGCTGCAACAACCCTTGCACTGTGTTTAAAACTGATCAATATTGCTGCAATTCTGGGAGCTGTGGCCCCACAGACTTCTCTAGGTTTTTCAAGGATCGGTGCCCGGATGCTTATAGCTACCCCAAGGATGACCAAACCAGCACATTTACATGCCCTACTGGGACTAACTATAGGGTTGTGTTCTGCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002831 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009620 GO:0031341 GO:0031343 GO:0031347 GO:0032101 GO:0040008 GO:0042268 GO:0043207 GO:0043900 GO:0043901 GO:0043902 GO:0043903 GO:0044126 GO:0044130 GO:0044144 GO:0044146 GO:0045919 GO:0045926 GO:0048518 GO:0048519 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051709 GO:0051710 GO:0051712 GO:0051714 GO:0051802 GO:0051804 GO:0051839 GO:0051841 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thaumatin

Protein Analysis

227

Amino Acids

24.37

Weight (kDa)

4.86

Isoelectric Point (pI)

21.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001028)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11650
fragaria_vesca	FvH4_3g09590 FvH4_5g01820 FvH4_5g01830 FvH4_5g01840
malus_domestica	MD04G1064100.v1.1 MD04G1064200.v1.1 MD04G1064400.v1.1
prunus_persica	Prupe.2G053000_v2.0.a1 Prupe.5G093500_v2.0.a1 Prupe.5G093600_v2.0.a1 Prupe.5G093800_v2.0.a1 Prupe.5G094200_v2.0.a1 Prupe.5G094300_v2.0.a1
pyrus_communis	pycom04g05790 pycom04g05800 pycom04g05820 pycom07g19440 pycom09g10580 pycom10g02510
rosa_chinensis	RchiOBHm_Chr2g0137431 RchiOBHm_Chr2g0137461 RchiOBHm_Chr7g0198711 RchiOBHm_Chr7g0198721 RchiOBHm_Chr7g0198751 RchiOBHm_Chr7g0198781
rosa_laevigata	RLG00000003839 RLG00000003842 RLG00000003844
rosa_multiflora	Rmu_co8259601.1_g000001 Rmu_sc0000220.1_g000002 Rmu_sc0000220.1_g000005 Rmu_sc0000765.1_g000003 Rmu_ssc0000312.1_g000012
rosa_roxburghii	Rroxscaffold_2G00107060 Rroxscaffold_3G00257410 Rroxscaffold_3G00257460 Rroxscaffold_3G00257480 Rroxscaffold_3G00257490
rosa_rugosa	Rorug02G0342600 Rorug07G0049900 Rorug07G0050000 Rorug07G0050000 Rorug07G0050100
rosa_samantha	Rh2BG397900 Rh2DG413200 Rh7AG173300 Rh7AG173400 Rh7AG173500 Rh7AG173600 Rh7BG176700 Rh7BG176800 Rh7BG176900 Rh7CG182700 Rh7CG182800 Rh7DG176000 Rh7DG176100 Rh7DG176200
rosa_wichuraiana	Rw7G015180 Rw7G015190 Rw7G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	137
AccII	CGCG	1 cut(s)	79
AciI	CCGC	3 cut(s)	135, 146, 202
AclWI	GGATC	1 cut(s)	591
AcoI	YGGCCR	1 cut(s)	298
AcsI	RAATTY	1 cut(s)	17
AfiI	CCNNNNNNNGG	3 cut(s)	137, 207, 208
AgsI	TTSAA	4 cut(s)	66, 385, 478, 580
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	130
AluBI	AGCT	5 cut(s)	228, 239, 252, 549, 606
AluI	AGCT	5 cut(s)	228, 239, 252, 549, 606
AlwI	GGATC	1 cut(s)	591
AoxI	GGCC	5 cut(s)	143, 167, 198, 298, 553
ApaI	GGGCCC	1 cut(s)	202
ApeKI	GCWGC	8 cut(s)	74, 119, 122, 225, 249, 252, 492, 534
ApoI	RAATTY	1 cut(s)	17
AseI	ATTAAT	1 cut(s)	453
AspLEI	GCGC	1 cut(s)	79
AspS9I	GGNCC	3 cut(s)	198, 199, 554
AsuC2I	CCSGG	1 cut(s)	593
AsuHPI	GGTGA	3 cut(s)	37, 120, 275
BaeGI	GKGCMC	3 cut(s)	202, 214, 593
BalI	TGGCCA	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	588
BanII	GRGCYC	1 cut(s)	202
BbvI	GCAGC	8 cut(s)	86, 131, 134, 237, 239, 261, 479, 521
BccI	CCATC	3 cut(s)	41, 227, 371
BceAI	ACGGC	1 cut(s)	459
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BciT130I	CCWGG	1 cut(s)	132
BciVI	GTATCC	1 cut(s)	426
BclI	TGATCA	1 cut(s)	523
BcnI	CCSGG	1 cut(s)	593
BfaI	CTAG	3 cut(s)	317, 426, 570
BfmI	CTRYAG	1 cut(s)	658
BfuI	GTATCC	1 cut(s)	426
BisI	GCNGC	9 cut(s)	75, 120, 123, 146, 226, 250, 253, 493, 535
BlsI	GCNGC	9 cut(s)	76, 121, 124, 147, 227, 251, 254, 494, 536
Bme1390I	CCNGG	2 cut(s)	132, 593
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	198, 199, 554
BmiI	GGNNCC	4 cut(s)	199, 200, 556, 590
BmrFI	CCNGG	2 cut(s)	132, 593
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	4 cut(s)	51, 212, 410, 586
BmuI	ACTGGG	1 cut(s)	657
BoxI	GACNNNNGTC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	264, 296
BpuEI	CTTGAG	1 cut(s)	468
BpuMI	CCSGG	1 cut(s)	593
BsaJI	CCNNGG	3 cut(s)	289, 408, 612
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 207, 208
Bse1I	ACTGG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	3 cut(s)	289, 408, 612
BseGI	GGATG	4 cut(s)	227, 425, 601, 622
BseLI	CCNNNNNNNGG	3 cut(s)	137, 207, 208
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	652
BseSI	GKGCMC	3 cut(s)	202, 214, 593
BseXI	GCAGC	8 cut(s)	86, 131, 134, 237, 239, 261, 479, 521
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	79
BshFI	GGCC	5 cut(s)	145, 169, 200, 300, 555
BshNI	GGYRCC	1 cut(s)	588
BsiSI	CCGG	2 cut(s)	186, 593
BslFI	GGGAC	3 cut(s)	374, 390, 664
BslI	CCNNNNNNNGG	3 cut(s)	137, 207, 208
BsmFI	GGGAC	3 cut(s)	374, 390, 664
BsnI	GGCC	5 cut(s)	145, 169, 200, 300, 555
Bsp120I	GGGCCC	1 cut(s)	198
Bsp1286I	GDGCHC	3 cut(s)	202, 214, 593
Bsp143I	GATC	2 cut(s)	523, 583
BspACI	CCGC	3 cut(s)	135, 146, 202
BspANI	GGCC	5 cut(s)	145, 169, 200, 300, 555
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	79
BspLI	GGNNCC	4 cut(s)	199, 200, 556, 590
BspPI	GGATC	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	588
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	3 cut(s)	289, 408, 612
BssMI	GATC	2 cut(s)	523, 583
BssT1I	CCWWGG	2 cut(s)	289, 612
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	4 cut(s)	101, 112, 155, 511
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	22, 349
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	4 cut(s)	227, 425, 601, 622
BstFNI	CGCG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	79
BstKTI	GATC	2 cut(s)	526, 586
BstMBI	GATC	2 cut(s)	523, 583
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	1 cut(s)	642
BstPAI	GACNNNNGTC	1 cut(s)	402
BstSCI	CCNGG	2 cut(s)	130, 591
BstSFI	CTRYAG	1 cut(s)	658
BstSLI	GKGCMC	3 cut(s)	202, 214, 593
BstUI	CGCG	1 cut(s)	79
BstV1I	GCAGC	8 cut(s)	86, 131, 134, 237, 239, 261, 479, 521
BstXI	CCANNNNNNTGG	1 cut(s)	296
BsuI	GTATCC	1 cut(s)	426
BsuRI	GGCC	5 cut(s)	145, 169, 200, 300, 555
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	4 cut(s)	227, 425, 601, 622
BtsI	GCAGTG	2 cut(s)	189, 467
BtsIMutI	CAGTG	4 cut(s)	160, 189, 467, 507
Cac8I	GCNNGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	79
Cfr13I	GGNCC	3 cut(s)	198, 199, 554
CviAII	CATG	2 cut(s)	639, 678
DdeI	CTNAG	2 cut(s)	22, 349
DpnI	GATC	2 cut(s)	525, 585
DpnII	GATC	2 cut(s)	523, 583
DraI	TTTAAA	1 cut(s)	517
EaeI	YGGCCR	1 cut(s)	298
Eco130I	CCWWGG	2 cut(s)	289, 612
Eco24I	GRGCYC	1 cut(s)	202
Eco32I	GATATC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	130
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	2 cut(s)	289, 612
EcoT22I	ATGCAT	1 cut(s)	44
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	2 cut(s)	289, 612
FaeI	CATG	2 cut(s)	642, 681
FaiI	YATR	9 cut(s)	38, 40, 297, 327, 342, 603, 640, 660, 679
FaqI	GGGAC	3 cut(s)	374, 390, 664
FatI	CATG	2 cut(s)	638, 677
FauI	CCCGC	1 cut(s)	209
FauNDI	CATATG	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	523
Fnu4HI	GCNGC	9 cut(s)	75, 120, 123, 146, 226, 250, 253, 493, 535
FokI	GGATG	4 cut(s)	234, 432, 608, 629
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	9 cut(s)	75, 120, 123, 146, 226, 250, 253, 493, 535
FspBI	CTAG	3 cut(s)	317, 426, 570
GlaI	GCGC	1 cut(s)	78
GluI	GCNGC	9 cut(s)	75, 120, 123, 146, 226, 250, 253, 493, 535
GsaI	CCCAGC	1 cut(s)	198
HaeIII	GGCC	5 cut(s)	145, 169, 200, 300, 555
HapII	CCGG	2 cut(s)	186, 593
HhaI	GCGC	1 cut(s)	79
Hin1II	CATG	2 cut(s)	642, 681
Hin6I	GCGC	1 cut(s)	77
HinP1I	GCGC	1 cut(s)	77
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	2 cut(s)	186, 593
HphI	GGTGA	3 cut(s)	37, 120, 275
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	1 cut(s)	92
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	3 cut(s)	115, 135, 472
HpyCH4III	ACNGT	4 cut(s)	101, 112, 155, 511
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	9 cut(s)	42, 74, 225, 329, 423, 441, 495, 507, 537
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	2 cut(s)	22, 349
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	642, 681
HspAI	GCGC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	523
Kzo9I	GATC	2 cut(s)	523, 583
LmnI	GCTCC	2 cut(s)	236, 546
Lsp1109I	GCAGC	8 cut(s)	86, 131, 134, 237, 239, 261, 479, 521
LweI	GCATC	4 cut(s)	51, 212, 410, 586
MaeI	CTAG	3 cut(s)	317, 426, 570
MaeII	ACGT	1 cut(s)	244
MalI	GATC	2 cut(s)	525, 585
MboI	GATC	2 cut(s)	523, 583
MhlI	GDGCHC	3 cut(s)	202, 214, 593
MlsI	TGGCCA	1 cut(s)	300
MluCI	AATT	3 cut(s)	17, 473, 538
MluNI	TGGCCA	1 cut(s)	300
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	4 cut(s)	136, 266, 290, 482
Mox20I	TGGCCA	1 cut(s)	300
Mph1103I	ATGCAT	1 cut(s)	44
MscI	TGGCCA	1 cut(s)	300
MseI	TTAA	4 cut(s)	150, 333, 453, 516
MslI	CAYNNNNRTG	1 cut(s)	637
Msp20I	TGGCCA	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	2 cut(s)	186, 593
MspR9I	CCNGG	2 cut(s)	132, 593
MvaI	CCWGG	1 cut(s)	132
MvnI	CGCG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	593
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	2 cut(s)	523, 583
NlaIII	CATG	2 cut(s)	642, 681
NlaIV	GGNNCC	4 cut(s)	199, 200, 556, 590
NsiI	ATGCAT	1 cut(s)	44
NspI	RCATGY	1 cut(s)	642
PfeI	GAWTC	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	137
PkrI	GCNGC	9 cut(s)	76, 121, 124, 147, 227, 251, 254, 494, 536
PshAI	GACNNNNGTC	1 cut(s)	402
PshBI	ATTAAT	1 cut(s)	453
Psp6I	CCWGG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	130
PspN4I	GGNNCC	4 cut(s)	199, 200, 556, 590
PspOMI	GGGCCC	1 cut(s)	198
PspPI	GGNCC	3 cut(s)	198, 199, 554
PvuII	CAGCTG	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	637
SaqAI	TTAA	4 cut(s)	150, 333, 453, 516
SatI	GCNGC	9 cut(s)	75, 120, 123, 146, 226, 250, 253, 493, 535
Sau3AI	GATC	2 cut(s)	523, 583
Sau96I	GGNCC	3 cut(s)	198, 199, 554
ScrFI	CCNGG	2 cut(s)	132, 593
SduI	GDGCHC	3 cut(s)	202, 214, 593
SetI	ASST	9 cut(s)	230, 241, 247, 254, 265, 277, 551, 575, 608
SfaNI	GCATC	4 cut(s)	51, 212, 410, 586
SfcI	CTRYAG	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	637
SmlI	CTYRAG	1 cut(s)	483
SmoI	CTYRAG	1 cut(s)	483
Sse9I	AATT	3 cut(s)	17, 473, 538
SsiI	CCGC	3 cut(s)	135, 146, 202
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	3 cut(s)	317, 426, 570
StyD4I	CCNGG	2 cut(s)	130, 591
StyI	CCWWGG	2 cut(s)	289, 612
TaaI	ACNGT	4 cut(s)	101, 112, 155, 511
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	2 cut(s)	84, 231
TasI	AATT	3 cut(s)	17, 473, 538
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	4 cut(s)	150, 333, 453, 516
Tru9I	TTAA	4 cut(s)	150, 333, 453, 516
TscAI	CASTG	4 cut(s)	160, 196, 467, 514
TseI	GCWGC	8 cut(s)	74, 119, 122, 225, 249, 252, 492, 534
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	4 cut(s)	160, 196, 467, 514
Van91I	CCANNNNNTGG	1 cut(s)	137
VspI	ATTAAT	1 cut(s)	453
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	642
XspI	CTAG	3 cut(s)	317, 426, 570
Zsp2I	ATGCAT	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.